BAC Information

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BAC

Clone NameB6Ng01-085C12
Chromosome3 (Build37)
Map Location 118,379,980 - 118,381,028
singlet/doubletsinglet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085C12.bB6Ng01-085C12.g
ACCDH898904DH898905
length1,1001,048
definitionDH898904|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C12, 5' end.DH898905|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaagaagtggtgtttcaatagagtttgtattaaataataata
aaaatagcatgtgattgtttcttttgctgttttttagttagtaggatggc
agtgtggctacagctttacttttgaataaagaaagatgaaattcatccta
ttgactaaagttctgtttaagaaattctcccccatgccaatcagtttgag
gctctttcccacattcttttctactacatgcagtgtaccttggttttatg
ttgaggtccttgattcacttagacttaagctttgtgcaaggtgacaaata
tgaatctattttcatttttctacatacagactacagttaaaccactacca
tttattgaagctgctttcttttttcaattgtatttttttttttttggctt
ctttgtcaaagatcaatgtccataagtgtgtggttttatttctaggtctt
caattctattccatcgatctacctgtctttctctgtaccaataccatgca
gttttatcactagtgctctgtagtatagcttgaggtaagtgatggtgatt
tccctagaagttctttcattgttaagaattgttttcactattctgggatt
tttttgtgttgttcctggtgtttttccatataaaattgagaattgctttt
atcatgtctttgaagaatttggttggaattttgatggggattgcattgaa
tctatagatggcttttggtaggatgcaattattactgttaatccttccag
ttcaagagcatggaagatctctccattttctgagttatgctttaatttat
ttcttgagagaaatgaagttcttgtcctataaatctttcattgtttggtt
agagttgaccccaagatattttatactatttgtgagggattgtgaaaggt
gttgtttccctatttctttcgcatcacgtttattattttgtataaggaag
ctactagttggttaaattaatttttatctgcccactcacaaaatttgttt
tacagctgtagaagttttctgggagaagggggggttccttatgtatacca
cctagtccctgcacaaaaggaagcttgactttctttgccaatttgttcct

gaattcataagcagaaatggagcagtaagagttttactgggacagtgata
gcaccaagaccccagaacaggtttggggcagcattagacattcagaaata
atttaggcaaacatcagttagcaaagggactgatatcggcaggctctgtg
aaaatatttttgttagactttgatgcagatcaactttatatagaatctag
tgttctgtaaaacaaaaaagttaaatatttcaaggaattttttttagaac
ttttatggttttaatgataatttggggtgtaaaactataataaacttact
gttctgtggagttagagtacagggagaaagcaccttgtagggatagagac
cattatttgcctttttaaaaaatattactttcagatctgtaacacatcag
gtgatgattacagacctgaaggatacaggttgtgcccttgaggaactagt
cattcagtggaagtgaagggtgggaaggtcatatctccaggctgtatact
tgagctcttctctgcttccacacacttaacagtagctcctttctttatcc
tctgtcaaaggtttggcttggcaatggaagcatccttttccccatcaggt
catttctacaccaggccttcagtgacttcaggtgtccacgggggtaccct
tgaatgtttaactagggatggaggtggaaaggggctattccagacctggc
tggaattgacagactgacctgagctcctggggcctttcttctgattggta
tcttctactaagcatctgcatcagtgcacttagagaggagtcagcctgtg
ctcaacactctgtgtcctcatccagcttccgtcctggctagtctttgata
tgcatcttgactctgttccttttcagtttatgatttgttttaatactgtc
agggattctacatgtaataatgcccttagtctgaattctcttatgtaaaa
aaaattatatatatttgaaccacagctttctcttttggaatattctgggt
aataacattggataagcatagtacctgaaaaaaaagggagggagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118379980_118381028
seq2: B6Ng01-085C12.g_68_1115

seq1  GAATTCATAAGCAGAAATGGAGCAGTAAGAGTTTTACTGGGACAGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGCAGAAATGGAGCAGTAAGAGTTTTACTGGGACAGTGATA  50

seq1  GCACCAAGACCCCAGAACAGGTTTGGGGCAGCATTAGACATTCAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGACCCCAGAACAGGTTTGGGGCAGCATTAGACATTCAGAAATA  100

seq1  ATTTAGGCAAACATCAGTTAGCAAAGGGACTGATATCGGCAGGCTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCAAACATCAGTTAGCAAAGGGACTGATATCGGCAGGCTCTGTG  150

seq1  AAAATATTTTTGTTAGACTTTGATGCAGATCAACTTTATATAGAATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTGTTAGACTTTGATGCAGATCAACTTTATATAGAATCTAG  200

seq1  TGTTCTGTAAAACAAAAAAGTTAAATATTTCAAGGAATTTTTTTTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTAAAACAAAAAAGTTAAATATTTCAAGGAATTTTTTTTAGAAC  250

seq1  TTTTATGGTTTTAATGATAATTTGGGGTGTAAAACTATAATAAACTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTTTTAATGATAATTTGGGGTGTAAAACTATAATAAACTTACT  300

seq1  GTTCTGTGGAGTTAGAGTACAGGGAGAAAGCACCTTGTAGGGATAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGGAGTTAGAGTACAGGGAGAAAGCACCTTGTAGGGATAGAGAC  350

seq1  CATTATTTGCCTTTTTAAAAAATATTACTTTCAGATCTGTAACACATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCCTTTTTAAAAAATATTACTTTCAGATCTGTAACACATCAG  400

seq1  GTGATGATTACAGACCTGAAGGATACAGGTTGTGCCCTTGAGGAACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATTACAGACCTGAAGGATACAGGTTGTGCCCTTGAGGAACTAGT  450

seq1  CATTCAGTGGAAGTGAAGGGTGGGAAGGTCATATCTCCAGGCTGTATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGGAAGTGAAGGGTGGGAAGGTCATATCTCCAGGCTGTATACT  500

seq1  TGAGCTCTTCTCTGCTTCCACACACTTAACAGTAGCTCCTTTCTTTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTCTCTGCTTCCACACACTTAACAGTAGCTCCTTTCTTTATCC  550

seq1  TCTGTCAAAGGTTTGGCTTGGCAATGGAAGCATCCTTTTCCCCATCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAGGTTTGGCTTGGCAATGGAAGCATCCTTTTCCCCATCAGGT  600

seq1  CATTTCTACACCAGGCCTTCAGTGACTTCAGGTGTCCACGGGGGTACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTACACCAGGCCTTCAGTGACTTCAGGTGTCCACGGGGGTACCCT  650

seq1  TGAATGTTTAACTAGGGATGGAGGTGGAAAGGGGCTATTCCAGACCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTAACTAGGGATGGAGGTGGAAAGGGGCTATTCCAGACCTGGC  700

seq1  TGGAATTGACAGACTGACCTGAGCTCCTGGGGCCTTTCTTCTGATTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGACAGACTGACCTGAGCTCCTGGGGCCTTTCTTCTGATTGGTA  750

seq1  TCTTCTACTAAGCATCTGCATCAGTGCACTTAGAGAGGAGTCAGCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTAAGCATCTGCATCAGTGCACTTAGAGAGGAGTCAGCCTGTG  800

seq1  CTCAACACTCTGTGTCCTCATCCAGCTTCCGTCCTGGCTAGTCTTTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACTCTGTGTCCTCATCCAGCTTCCGTCCTGGCTAGTCTTTGATA  850

seq1  TGCATCTTGACTCTGTTCCTTTTCAGTTTATGAATTGTTTTAATACTGTC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCATCTTGACTCTGTTCCTTTTCAGTTTATGATTTGTTTTAATACTGTC  900

seq1  AGGGATTCTACATGTAATAATGCCCTTAGTCTGAATTCTCTTTATGTAAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AGGGATTCTACATGTAATAATGCCCTTAGTCTGAATTCTC-TTATGT-AA  948

seq1  AAAAAAATATATATATATGAACCACAGCTTTCTC-TTTGGAATATTCTGG  999
      |||||| ||||||||| ||||||||||||||||| |||||||||||||||
seq2  AAAAAATTATATATATTTGAACCACAGCTTTCTCTTTTGGAATATTCTGG  998

seq1  GTAAATAACATTGGATAAGCATAGTAACTG-AGAGAGAGGGAGGGAGAGA  1048
      || ||||||||||||||||||||||| ||| | | | |||||||||||||
seq2  GT-AATAACATTGGATAAGCATAGTACCTGAAAAAAAAGGGAGGGAGAGA  1047

seq1  G  1049
      |
seq2  G  1048