BAC Information

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BAC

Clone NameB6Ng01-085D12
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,187 - 41,059,737157,855,251 - 157,856,417
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085D12.bB6Ng01-085D12.g
ACCDH898952DH898953
length9911,168
definitionDH898952|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D12, 5' end.DH898953|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(157,855,251 - 157,856,417)
sequence
gaattcttagtttagttctgagccctatttttttaatggggttatttgat
tttctggagtccaccttcttgaattctttatatatgttggatattagtcc
cctatctgatttaggacaggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgtcttttgccttgcagaagctttgcaatttt
atgaggtcccatttatcgattctggatctaacagcacaagccattactgt
tctattcaggaatttttcccctgtacccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgtctccggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagataggaatggatcaatttg
cattctttacacgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggtacatttctgggtcttcaattctattccattgg
tctacttgtctgtggctataccagtaccgtgcagtttttatcacaattgc
tctgtagtacagctttaggtcggacatggtgattccaccagaggttcttt
tatcattcagaacagtttttgttatcctaggttttttgttattccagatg
aatttggagattgccctttcaaattcattgaagaattgagttgaaatttt
gatggggattgcattgaatctgtagattgcttttggcaagacagccattt
ttactatattgatcctgccaatccatgagcatgggagatctttctatctt
ctgagatcttctttaatttatttcttcagagacttgaagttcttatcata
cagttttttcgcttccttagttagagtcacgccaagtgttttatattatt
tgtggctattttgaagtgtgttgtttccctaatttctttct
gaattccctgtgattacttttttttgtttttctcaataatctgtgaatgc
atgtgaagccatctatcattgggacaaaatgcttaatttctgcacttcaa
atttctctaatactttcaacttgtaatcaaacacagtggtgcagtgcagc
catctttcagtgagtgtcagatggaattatgacaatggtttggaaagatg
ataatggggctgaaggatttttactgctgaacttgggagagtgactccat
tgcagaactcttgtctgccatgtgtgaagccatgtgactggcccttacac
acaaaacaaatgaaactgcaaaacaaaaacaacaaaatgaagcagaacca
tggttgcttgatcacacactaacacatagtatgattgtacttggatggat
agtaatgccggtgtaggcagacctactgtgctgctagtcacacagaatgc
aacatatccaaagttgtacagcagacactcctgataaggacagtaaacag
tctactttgtaaagtgtttactaggctatgctctttatcagtattttgga
gggtatgccttcaacttcttcaaaagttcagtgttgcacttgtggaagaa
agtgcctctatgatgttcacacagtgataaaacacatgtccttgttgtca
agtgattcttggttgctccatgactctgaacagtttattcctgaataaac
tataaaagactagatgactgagttgatagctcagtggataaagtttgcta
ttcaaatatgaggagctgaatgtgggtctccatcacccatataaatatac
tttatcttgtggctttcacactcagatgcacatacaagcatgtgcaccct
cacatacttttcatacacatatacatatacacatacacatacatatatac
acataagcctgggaaatactacacatctcatttattaacactacacttta
aaggttccaatgtgtatattaaaagattgaatagttattttcttccaaag
gtctgccctgcccaatgtcattgggcttttggaagtggtgaaataagata
cagccaaagaatgatgaaagagcatcttccaatctccctggcaaaggaga
aggtcacatgaccataatagctatgcagctgcttagccagccttggagaa
ggaccggtgaataaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-085D12.b_46_597 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| | | |||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGTACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||||||||||||||||||||||||||||||  |||||| |||| |||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCGTGTA-AAG  149

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGCAAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  199

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GGATTAAGGAACTCCACATAAAACCGGAGACACTGAAACTTATAGAGGAG  249

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||| ||||||||||| ||||||||||  |||||||||||||||||| |
seq2  AAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAA  299

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||||| ||||||||||||||| ||||  ||||| || ||||||||||
seq2  TAGAACAGTAATGGCTTGTGCTGTTAGATCCAGAATCGATAAATGGGACC  349

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||| |||||||||||||||||||||||||||| ||||||||||||
seq2  TCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACTGTCAATAAGACA  399

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTGTCCTAAATCAGA  449

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      |||||||||||||||||| |||||| ||||| ||||||||||||| ||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAATTCAAGAAGGTGGACTCCA  499

seq1  GAAAATCAAATAACCCCATT-AAAAAATGGGGCTCAGAGCTAAACAAAGA  548
      |||||||||||||||||||| ||||||| ||||||||| |||||| ||||
seq2  GAAAATCAAATAACCCCATTAAAAAAATAGGGCTCAGAACTAAACTAAGA  549

seq1  ATT  551
      |||
seq2  ATT  552

seq1: chr3_157855251_157856417
seq2: B6Ng01-085D12.g_69_1236

seq1  GAATTCCCTGTGATTACTTTTTTTTGTTTTTCTCAATAATCTGTGAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGATTACTTTTTTTTGTTTTTCTCAATAATCTGTGAATGC  50

seq1  ATGTGAAGCCATCTATCATTGGGACAAAATGCTTAATTTCTGCACTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCCATCTATCATTGGGACAAAATGCTTAATTTCTGCACTTCAA  100

seq1  ATTTCTCTAATACTTTCAACTTGTAATCAAACACAGTGGTGCAGTGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTAATACTTTCAACTTGTAATCAAACACAGTGGTGCAGTGCAGC  150

seq1  CATCTTTCAGTGAGTGTCAGATGGAATTATGACAATGGTTTGGAAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCAGTGAGTGTCAGATGGAATTATGACAATGGTTTGGAAAGATG  200

seq1  ATAATGGGGCTGAAGGATTTTTACTGCTGAACTTGGGAGAGTGACTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGGCTGAAGGATTTTTACTGCTGAACTTGGGAGAGTGACTCCAT  250

seq1  TGCAGAACTCTTGTCTGCCATGTGTGAAGCCATGTGACTGGCCCTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACTCTTGTCTGCCATGTGTGAAGCCATGTGACTGGCCCTTACAC  300

seq1  ACAAAACAAATGAAACTGCAAAACAAAAACAACAAAATGAAGCAGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAATGAAACTGCAAAACAAAAACAACAAAATGAAGCAGAACCA  350

seq1  TGGTTGCTTGATCACACACTAACACATAGTATGATTGTACTTGGATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTTGATCACACACTAACACATAGTATGATTGTACTTGGATGGAT  400

seq1  AGTAATGCCGGTGTAGGCAGACCTACTGTGCTGCTAGTCACACAGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCCGGTGTAGGCAGACCTACTGTGCTGCTAGTCACACAGAATGC  450

seq1  AACATATCCAAAGTTGTACAGCAGACACTCCTGATAAGGACAGTAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCCAAAGTTGTACAGCAGACACTCCTGATAAGGACAGTAAACAG  500

seq1  TCTACTTTGTAAAGTGTTTACTAGGCTATGCTCTTTATCAGTATTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTGTAAAGTGTTTACTAGGCTATGCTCTTTATCAGTATTTTGGA  550

seq1  GGGTATGCCTTCAACTTCTTCAAAAGTTCAGTGTTGCACTTGTGGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGCCTTCAACTTCTTCAAAAGTTCAGTGTTGCACTTGTGGAAGAA  600

seq1  AGTGCCTCTATGATGTTCACACAGTGATAAAACACATGTCCTTGTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCTATGATGTTCACACAGTGATAAAACACATGTCCTTGTTGTCA  650

seq1  AGTGATTCTTGGTTGCTCCATGACTCTGAACAGTTTATTCCTGAATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTTGGTTGCTCCATGACTCTGAACAGTTTATTCCTGAATAAAC  700

seq1  TATAAAAGACTAGATGACTGAGTTGATAGCTCAGTGGATAAAGTTTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGACTAGATGACTGAGTTGATAGCTCAGTGGATAAAGTTTGCTA  750

seq1  TTCAAATATGAGGAGCTGAATGTGGGTCTCCATCACCCATATAAATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATGAGGAGCTGAATGTGGGTCTCCATCACCCATATAAATATAC  800

seq1  -TTATCTTGTGGCTTTCACACTCAGATGCACATACAAGCATGTGCACCCT  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGTGGCTTTCACACTCAGATGCACATACAAGCATGTGCACCCT  850

seq1  CACATAC-TTTCATACACATATACATATACACATACACATACATATATAC  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTTTTCATACACATATACATATACACATACACATACATATATAC  900

seq1  ACATAAGCCTGGGAAATACTACACATCTCATTTATTAACACTACACTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCCTGGGAAATACTACACATCTCATTTATTAACACTACACTTTA  950

seq1  AAGGTTCCAAATGTGTATATT-ATAGATTGAATAGTTATTTTCTTCCAAA  997
      |||||||| |||||||||||| | ||||||||||||||||||||||||||
seq2  AAGGTTCC-AATGTGTATATTAAAAGATTGAATAGTTATTTTCTTCCAAA  999

seq1  GGTTCTGCCCTGCCCAATGTCATTGGGCTTTTGGAAGGTGGTGAAATTAG  1047
      || ||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GG-TCTGCCCTGCCCAATGTCATTGGGCTTTTGGAA-GTGGTGAAATAAG  1047

seq1  ATACAGCCAAAAGACTGATGAGAGAGCATCTTCACACTCCCCTGGGCAAA  1097
      |||||||| ||||| |||||| ||||||||||| || || ||  ||||||
seq2  ATACAGCC-AAAGAATGATGAAAGAGCATCTTC-CAATCTCCCTGGCAAA  1095

seq1  GGAG-ATGTCACATGACCATAATAGCATAGCAGCTGC-TAGCCAGCCTT-  1144
      |||| | |||||||||||||||||||   |||||||| ||||||||||| 
seq2  GGAGAAGGTCACATGACCATAATAGCTATGCAGCTGCTTAGCCAGCCTTG  1145

seq1  GAGAAGAGCACTGTG-ATAAAGAC  1167
      |||||| |  | ||| ||||||||
seq2  GAGAAG-GACCGGTGAATAAAGAC  1168