BAC Information

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BAC

Clone NameB6Ng01-085H10
Chromosome3 (Build37)
Map Location 82,038,621 - 82,160,600
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H10.bB6Ng01-085H10.g
ACCDH899128DH899129
length1,1591,165
definitionDH899128|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H10, 5' end.DH899129|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,038,621 - 82,039,559)(82,159,416 - 82,160,600)
sequence
gaattcatccagcctgagcctactagatgagctttgtgtgttgcagatgg
ctaagtgagagaaatgtgattgcccaaccattttggagcctagaagatga
ggggttccagatgtcagaagtgagctgcagcatctggtttataatgctgg
atgttgggttttgcttttgcctttgggatgttgttactatgccctggttc
ttctctcttaaaataaagtgtatgacttattttgggttttacaggcacac
aattaagagactgggtattctaaagatacattaatcttttaaattacagc
atttttgaagatgttagaacttttaaagttctcttttacattgtgacatt
aacatgcaaccttccagataattataaggaaagattcaatagtaatgcat
tttcgtattaagttgatgaatagtgagttggttcttgtcagtttgaaaaa
ctagagtcaccttaggagagggaacctcaactgagggattgcttctacca
gattagcaggtgaatgctcctctggttcatttccttgattaataattgat
gtgggaaggtagtctcacagtgggcagagccactcataggcaggcatact
tgggttgtataaaagagcaagttgatcaaaccctgagtaacaagccaatc
agcatccttcttccatggtccctgcttgtgtttctgcatctggattgctg
ccttgaagtccagttgggcttcctttgatgatggactaaatgtaagcttt
tggccatgttccttatcacaggaacatgaaagcacaggagtacactgatc
ttccaacatcctagggcttttctagacatatattctaaattttttcctta
tacctcttccaaaccaatcccaagttcattaagaagcatattgccaggct
taatcacaggttggcctcgatgggtatccatttcccttattactttcctt
gttcttaatgaatactgagagagcacacaaggtggagaatttcttctgct
tatagttcagggtacatgtcatcatgatgaagccatatgcagcagggtct
taagcatggtcatggcttcaaagttgggagtgggagcaatagattgggat
tggcgttaatttcagctgcctactgggactacttcgggagaatccacacc
ctcagttct
gaattctttctagcagcaattcagttgttacacatgtgagtttgagttga
gtactaagtatgggagagaaggctggacctgaagtccagtatatggaccc
acctaaccatggttttgagtggctcagcacaggaactgcttttagttagt
gctcaagataatttactgtcagtgattcttcaggttgccttttggttttg
gtgtgtgtgtgtctttgtgtgtgtgcatgtgtgcacctgcatgagcacct
gtgcatgcctgcatgtgtttgggcaggatatagggtagacgaagacccct
tttcatatcacaaagaaattgagatgtgacttttattcagcagttcctaa
tcctcgcttagcacaaagttagttgttctgtggcttgtggtacaggttag
agatcagaaaaaattgtttaaaggaacaagggtctgtgctcacaatcatc
atgggagcagtctatgggcactggatggtatgctgtaagacatgagtccc
cacagctcttgcaggttgaaggctgagttcagatacaagttgcagaattg
tggggggaaggcactgtggccagggagagactcacaaaggggaacatcag
agtcacaaggaaagccacctcattgtagtgatctgtggtgacttaagtgt
atttttttctgtatgtgggaaaaacttaacatcactatttgaaagaaata
tcaacattatcaaaattaaaatggagtcactttggtcaaccttaaactta
aaagcaaataatgagccaggcagtggtgatgcacgccttttaatcccagc
acttgggaggcagaggcaggcagatttctgatttgaggccagcccgggtc
tacagagtgagttccaggacagccagggctacacaagaaccctgtgtcaa
aaagacaaaacaaacaaaaagcaaacaatgctttgatgttgtgaaagagg
tgtctgcatggtgactgatacactaaagatgggcataccctctgctcaga
tgtcacccagacaagagtacttctgcagaacatctgcgccagcactatct
gttcagactggaaatgacatcccacttttataccaggaactgaagaatta
ttgttcaaataccccattgggtcggtcccaaggtcctttcatgctccata
attacagttcagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82038621_82039559
seq2: B6Ng01-085H10.b_298_1205

seq1  ATTAAGAGACTGGGTATTCTAAAGATACATTAATCTTTTAAATTACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGACTGGGTATTCTAAAGATACATTAATCTTTTAAATTACAGCA  50

seq1  TTTTTGAAGATGTTAGAACTTTTAAAGTTCTCTTTTACATTGTGACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGATGTTAGAACTTTTAAAGTTCTCTTTTACATTGTGACATTA  100

seq1  ACATGCAACCTTCCAGATAATTATAAGGAAAGATTCAATAGTAATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAACCTTCCAGATAATTATAAGGAAAGATTCAATAGTAATGCATT  150

seq1  TTCGTATTAAGTTGATGAATAGTGAGTTGGTTCTTGTCAGTTTGAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATTAAGTTGATGAATAGTGAGTTGGTTCTTGTCAGTTTGAAAAAC  200

seq1  TAGAGTCACCTTAGGAGAGGGAACCTCAACTGAGGGATTGCTTCTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACCTTAGGAGAGGGAACCTCAACTGAGGGATTGCTTCTACCAG  250

seq1  ATTAGCAGGTGAATGCTCCTCTGGTTCATTTCCTTGATTAATAATTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGGTGAATGCTCCTCTGGTTCATTTCCTTGATTAATAATTGATG  300

seq1  TGGGAAGGTAGTCTCACAGTGGGCAGAGCCACTCATAGGCAGGCATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTAGTCTCACAGTGGGCAGAGCCACTCATAGGCAGGCATACTT  350

seq1  GGGTTGTATAAAAGAGCAAGTTGATCAAACCCTGAGTAACAAGCCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTATAAAAGAGCAAGTTGATCAAACCCTGAGTAACAAGCCAATCA  400

seq1  GCATCCTTCTTCCATGGTCCCTGCTTGTGTTTCTGCATCTGGATTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTCTTCCATGGTCCCTGCTTGTGTTTCTGCATCTGGATTGCTGC  450

seq1  CTTGAAGTCCAGTTGGGCTTCCTTTGATGATGGACTAAATGTAAGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTCCAGTTGGGCTTCCTTTGATGATGGACTAAATGTAAGCTTTT  500

seq1  GGCCATGTTCCTTATCACAGGAACATGAAAGCACAGGAGTACACTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTTCCTTATCACAGGAACATGAAAGCACAGGAGTACACTGATCT  550

seq1  TCCAACATCCTAGGGCTTTTCTAGACATATATTCTAAATTTTTTCCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATCCTAGGGCTTTTCTAGACATATATTCTAAATTTTTTCCTTAT  600

seq1  ACCTCTTCCAAACCAATTCCAAAGTTCATTAAGAAGCATATTGCCAGGCT  650
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  ACCTCTTCCAAACCAA-TCCCAAGTTCATTAAGAAGCATATTGCCAGGCT  649

seq1  TAATCACAGGTTGGCCTCGATGGGTATCCATTTCCCTTATTACTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGGTTGGCCTCGATGGGTATCCATTTCCCTTATTACTTTCCTT  699

seq1  GATTCTTTAATGAAATAACTGAGAAGAAGCAACACAAGGTGGAGAATTTC  750
      | ||| ||||||||   |||||||   ||| |||||||||||||||||||
seq2  G-TTC-TTAATGAA--TACTGAGA--GAGC-ACACAAGGTGGAGAATTTC  742

seq1  TTCTGGCTTATAGTTCAAGGGTACATGTCCATCATGATGAAACCATATGG  800
      |||| ||||||||||| ||||||||||| |||||||||||| |||||| |
seq2  TTCT-GCTTATAGTTC-AGGGTACATGT-CATCATGATGAAGCCATAT-G  788

seq1  CAGCAGGGTCTTAAGGCAATTGGTCATTGCTTCCATAGTTGGGAAGTGGG  850
      |||||||||||||| |||  ||||||| |||| || ||||||| ||||||
seq2  CAGCAGGGTCTTAA-GCA--TGGTCATGGCTT-CAAAGTTGGG-AGTGGG  833

seq1  AAGCAAATAGGATTGGGATCTGCGTATAAAATTTCAAGGCTTGCTTACTG  900
       ||| |||| |||||||||  ||||    |||||||  || ||| |||||
seq2  -AGC-AATA-GATTGGGATTGGCGT---TAATTTCA--GC-TGCCTACTG  874

seq1  GGACTCACTTCTGGGAAGACTCCACACCCTCAAAGTTCT  939
      ||||| |||||  || ||| |||||||||||  ||||||
seq2  GGACT-ACTTC--GGGAGAATCCACACCCTC--AGTTCT  908

seq1: chr3_82159416_82160600
seq2: B6Ng01-085H10.g_70_1234 (reverse)

seq1  GATCTGAACATGTAAATTATGGACGCATGAAAGGACCTTGGAGAACAGGA  50
      ||||||||| ||| ||||||||| ||||||||||||||||| || |  ||
seq2  GATCTGAAC-TGT-AATTATGGA-GCATGAAAGGACCTTGG-GACC--GA  44

seq1  CCCAAATGGGGTATTTTGAAACAATAA-TCTTCAGTCTCTGGTTAATAAA  99
      ||| ||||||||||||   |||||||| ||||||||  |||||  || ||
seq2  CCC-AATGGGGTATTT--GAACAATAATTCTTCAGTTCCTGGT--AT-AA  88

seq1  AAGTGGGATGTCATTTCCAGTCTGAACAGATAGGTGCTGGCCGCAGATGT  149
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  AAGTGGGATGTCATTTCCAGTCTGAACAGATA-GTGCTGG-CGCAGATGT  136

seq1  CTTGCAGAAGTACTTCTGGTCTGGGTGACATCTGAAGCAGAGGGTTATGG  199
        ||||||||||| ||| |||||||||||||||| ||||||||| |||| 
seq2  TCTGCAGAAGTAC-TCTTGTCTGGGTGACATCTG-AGCAGAGGG-TATGC  183

seq1  CCATCTTTAGTGGTATCAGTCAACCATGCAGACACCTTCTTTCACAACAT  249
      ||||||||||| ||||||||| |||||||||||||| |||||||||||||
seq2  CCATCTTTAGT-GTATCAGTC-ACCATGCAGACACC-TCTTTCACAACAT  230

seq1  CAAAGCATTGTTTGCTTTTTGTTTGTTTTGTCTTTTTGACACAGGGTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CAAAGCATTGTTTGCTTTTTGTTTGTTTTGTCTTTTTGACACAGGGTT--  278

seq1  TTTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCC-GGCTGGC  348
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCCGGGCTGGC  328

seq1  CTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATT-AA  397
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCAAA-TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  377

seq1  AGGCGTGCATCACCACTGCCTGGCTCATTATTTGCTTTTAAGTTTAAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGCATCACCACTGCCTGGCTCATTATTTGCTTTTAAGTTTAAGGT  427

seq1  TGACCAAAGTGACTCCATTTTAATTTTGATAATGTTGATATTTCTTTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAGTGACTCCATTTTAATTTTGATAATGTTGATATTTCTTTCAA  477

seq1  ATAGTGATGTTAAGTTTTTCCCACATACAGAAAAAAATACACTTAAGTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGTTAAGTTTTTCCCACATACAGAAAAAAATACACTTAAGTCA  527

seq1  CCACAGATCACTACAATGAGGTGGCTTTCCTTGTGACTCTGATGTTCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATCACTACAATGAGGTGGCTTTCCTTGTGACTCTGATGTTCCCC  577

seq1  TTTGTGAGTCTCTCCCTGGCCACAGTGCCTTCCCCCCACAATTCTGCAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGTCTCTCCCTGGCCACAGTGCCTTCCCCCCACAATTCTGCAAC  627

seq1  TTGTATCTGAACTCAGCCTTCAACCTGCAAGAGCTGTGGGGACTCATGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGAACTCAGCCTTCAACCTGCAAGAGCTGTGGGGACTCATGTC  677

seq1  TTACAGCATACCATCCAGTGCCCATAGACTGCTCCCATGATGATTGTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCATACCATCCAGTGCCCATAGACTGCTCCCATGATGATTGTGAG  727

seq1  CACAGACCCTTGTTCCTTTAAACAATTTTTTCTGATCTCTAACCTGTACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCCTTGTTCCTTTAAACAATTTTTTCTGATCTCTAACCTGTACC  777

seq1  ACAAGCCACAGAACAACTAACTTTGTGCTAAGCGAGGATTAGGAACTGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCACAGAACAACTAACTTTGTGCTAAGCGAGGATTAGGAACTGCT  827

seq1  GAATAAAAGTCACATCTCAATTTCTTTGTGATATGAAAAGGGGTCTTCGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGTCACATCTCAATTTCTTTGTGATATGAAAAGGGGTCTTCGT  877

seq1  CTACCCTATATCCTGCCCAAACACATGCAGGCATGCACAGGTGCTCATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTATATCCTGCCCAAACACATGCAGGCATGCACAGGTGCTCATGC  927

seq1  AGGTGCACACATGCACACACACAAAGACACACACACACCAAAACCAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACACATGCACACACACAAAGACACACACACACCAAAACCAAAAG  977

seq1  GCAACCTGAAGAATCACTGACAGTAAATTATCTTGAGCACTAACTAAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGAAGAATCACTGACAGTAAATTATCTTGAGCACTAACTAAAAG  1027

seq1  CAGTTCCTGTGCTGAGCCACTCAAAACCATGGTTAGGTGGGTCCATATAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTGTGCTGAGCCACTCAAAACCATGGTTAGGTGGGTCCATATAC  1077

seq1  TGGACTTCAGGTCCAGCCTTCTCTCCCATACTTAGTACTCAACTCAAACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCAGGTCCAGCCTTCTCTCCCATACTTAGTACTCAACTCAAACT  1127

seq1  CACATGTGTAACAACTGAATTGCTGCTAGAAAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTAACAACTGAATTGCTGCTAGAAAGAATTC  1165