BAC Information

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BAC

Clone NameB6Ng01-085H18
Chromosome3 (Build37)
Map Location 13,469,221 - 13,470,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823
Downstream geneLOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H18.bB6Ng01-085H18.g
ACCDH899144DH899145
length1,2411,108
definitionDH899144|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H18, 5' end.DH899145|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtactcaatttttttttttttttgattttct
ggagtccagcttattgagttctttgtatatattagatattagtcccctat
cagatttagtattggtaaagatcctttcccaatctgtttgtggctttttt
gtcttattgacagtgtcttttgccttacaaaacctttgcaattttatgag
gtcccatttgtcgattcttgatctcatgacacaagtcgtcattgctgttc
tgttcaggaatttttcccgtgtgcccatatcttccaggcttttgcccact
ttctcctctataagtttcagtgtctctggtttcatgtggagttccttgat
ctacttagacttgagctttgtacaagggaatgagtatggattaatttgca
ttcttctgcataaccgccagttgagccagcaccatttgttgaaaatgctg
tcttttctccactggatggttttagctcctttgtcaaagatcaaatgatc
ataggtgtgtgggttcatttctgcatcttccattctatttcattgatcta
cctgtctgtcattgtaccagtaccatgcagggtttttttttttttttttt
tttttttttttttttttttttaaacacaattgctctgaaatacagcttga
gggcaggcaaggggattccaccagaggttctttttattggtgagaatagt
tttttgctatcctaggttatttgttatttcagatgaatttgcaaattgcc
ctttctaactctgtcaagaattgagttggggttttgatggggattgcatt
gcatctgtagattgcttttgacaagaatagccatttttactatattattt
cctgccaatccatgagcatagggggatcttttccatcttatgagatcttc
tcctatttctttttttcagaggacttgaagttcttatcatacaaatattt
tcactttcctcagttggtgtcccaccaagtatttttaatttattcatgat
aattgttgaagggttttatttcctaattcctttcccagctgtttatcctt
gggagagaaaggctgtgggcatggccatctagttgagtttgatctttgga
cactgtagtatcccatgtgtgaatttcacctacattgggaaggtatggta
ctgcacatgtttttgacaatgtcccattaagtgccctcattctcaacggg
aggctttctagtgaacatggtccatagctctggggctcgtc
gaattcacttctttcatgtagcatttgaagtaccttatcctacctgtaag
accagatttaagtctggcccaacaacatctctcttgtgcaatagcaatag
aatctttcacaaatgacttaaactctggttttgttttcctaaatatttaa
aatgaggataataatgcttttgtcacagagctctataagaattaaatgat
aatcttggctttttaaatgctgttcctttgatctgaatttttttaatcct
gtttttaatgtggtggtgaaacctaaaagagggagaatgccatcttggaa
gtaaagaggagtggaatattttaagcactgggctgcaattatgtaagtaa
tggaagaaatgcaaggaggatattgatggcttgcttttcctcagcagagc
tgcattaaacataaaggggagtcattttattgaataataaaagactgaca
atcactgtgattggctggtggccattactgcagtgcaattctaaacagct
tgtttttcaaagttcttcttgaataactctctaaacccagacattgcctg
gcctgatatgaagctccaaaactcattcttaaagtgaagttgctcacagt
ccaacatctctgtaaatgatggaaaagatgttcattggaactgacttctc
tttaatgtattttgatctggatattcttatggaagatgtaacaaactcgg
gtttaagtagcataattcatgagacatgaaagaaaagggccatgtttgga
gggatctattaaaaatcaaaataaaacaaaaatgaagatcaagaaaggtc
ttatcacaacccacattttctctgagttatccagaggaaaagtcagcagc
ttctcaacagaacttaggctcttggtgttctggactccacttttgatgca
cccatctgtctctatcagtatttcacatcctatctgggaagtgtgtataa
tagtgagtttagttggcatttccaagacaccatattatgatttttcaggc
tatttgatatctctatctaaattggtgactagtactttatttgatcaatg
gagttttgccagatgttgtaaggcattggcttttggagccctcgtatgaa
tgctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13469221_13470340
seq2: B6Ng01-085H18.g_68_1175

seq1  GAATTCACTTCTTTCATGTAGCATTTGAAGTACCTTATCCTACCTGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTTCATGTAGCATTTGAAGTACCTTATCCTACCTGTAAG  50

seq1  ACCAGATTTAAGTCTGGCCCAACAACATCTCTCTTGTGCAATAGCAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTTAAGTCTGGCCCAACAACATCTCTCTTGTGCAATAGCAATAG  100

seq1  AATCTTTCACAAATGACTTAAACTCTGGTTTTGTTTTCCTAAATATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCACAAATGACTTAAACTCTGGTTTTGTTTTCCTAAATATTTAA  150

seq1  AATGAGGATAATAATGCTTTTGTCACAGAGCTCTATAAGAATTAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGATAATAATGCTTTTGTCACAGAGCTCTATAAGAATTAAATGAT  200

seq1  AATCTTGGCTTTTTAAATGCTGTTCCTTTGATCTGAATTTTTTTAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGCTTTTTAAATGCTGTTCCTTTGATCTGAATTTTTTTAATCCT  250

seq1  GTTTTTAATGTGGTGGTGAAACCTAAAAGAGGGAGAATGCCATCTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATGTGGTGGTGAAACCTAAAAGAGGGAGAATGCCATCTTGGAA  300

seq1  GTAAAGAGGAGTGGAATATTTTAAGCACTGGGCTGCAATTATGTAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGGAGTGGAATATTTTAAGCACTGGGCTGCAATTATGTAAGTAA  350

seq1  TGGAAGAAATGCAAGGAGGATATTGATGGCTTGCTTTTCCTCAGCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAATGCAAGGAGGATATTGATGGCTTGCTTTTCCTCAGCAGAGC  400

seq1  TGCATTAAACATAAAGGGGAGTCATTTTATTGAATAATAAAAGACTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAACATAAAGGGGAGTCATTTTATTGAATAATAAAAGACTGACA  450

seq1  ATCACTGTGATTGGCTGGTGGCCATTACTGCAGTGCAATTCTAAACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTGATTGGCTGGTGGCCATTACTGCAGTGCAATTCTAAACAGCT  500

seq1  TGTTTTTCAAAGTTCTTCTTGAATAACTCTCTAAACCCAGACATTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAAAGTTCTTCTTGAATAACTCTCTAAACCCAGACATTGCCTG  550

seq1  GCCTGATATGAAGCTCCAAAACTCATTCTTAAAGTGAAGTTGCTCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATATGAAGCTCCAAAACTCATTCTTAAAGTGAAGTTGCTCACAGT  600

seq1  CCAACATCTCTGTAAATGATGGAAAAGATGTTCATTGGAACTGACTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCTCTGTAAATGATGGAAAAGATGTTCATTGGAACTGACTTCTC  650

seq1  TTTAATGTATTTTGATCTGGATATTCTTATGGAAGATGTAACAAACTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTATTTTGATCTGGATATTCTTATGGAAGATGTAACAAACTCGG  700

seq1  GTTTAAGTAGCATAATTCATGAGACATGAAAGAAAAGGGCCATGTTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTAGCATAATTCATGAGACATGAAAGAAAAGGGCCATGTTTGGA  750

seq1  GGGATCTATTAAAAATCAAAATAAAACAAAAATGAAGATCAAG-AAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGATCTATTAAAAATCAAAATAAAACAAAAATGAAGATCAAGAAAGGTC  800

seq1  TTATCACAACCCACATTTTCTCTGAGTTATCCAGAGGAAAAGTCAGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAACCCACATTTTCTCTGAGTTATCCAGAGGAAAAGTCAGCAGC  850

seq1  TTCTCAACAGAACTTAAGGCTCCTGGTGTTCTGGACTCCAC-TTTGATGC  898
      ||||||||||||||| |||||| |||||||||||||||||| ||||||||
seq2  TTCTCAACAGAACTT-AGGCTCTTGGTGTTCTGGACTCCACTTTTGATGC  899

seq1  ACCCATCTGTCTCTATCAGTATTTCACATCCTATCTGGGAAGTGTGTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTGTCTCTATCAGTATTTCACATCCTATCTGGGAAGTGTGTATA  949

seq1  ATAAGTGAGTTTAGTTGGCAATTTTCCAAGACA-CATATTTAATGATTTT  997
      || |||||||||||||||||  ||||||||||| ||||||  ||||||||
seq2  AT-AGTGAGTTTAGTTGGCA--TTTCCAAGACACCATATT--ATGATTTT  994

seq1  TCAGGGCTATTTTAAATATCTCTTATCTAAATT-GTGACTTAGTACTTTA  1046
      ||| ||||||||   ||||||| |||||||||| ||||| ||||||||||
seq2  TCA-GGCTATTT--GATATCTC-TATCTAAATTGGTGAC-TAGTACTTTA  1039

seq1  TTTGATCAAT-GAGTTTTGCCAAGAATGTTGTAGAAGCATTTGCTTTTGG  1095
      |||||||||| |||||||||||   |||||||| | ||||| ||||||||
seq2  TTTGATCAATGGAGTTTTGCCA--GATGTTGTA-AGGCATTGGCTTTTGG  1086

seq1  AGCCCTCCGTAATGAATGCATACTT  1120
      |||||| ||| |||||||| |||||
seq2  AGCCCT-CGT-ATGAATGC-TACTT  1108