BAC Information

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BAC

Clone NameB6Ng01-085K08
Chromosome3 (Build37)
Map Location 41,059,224 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085K08.bB6Ng01-085K08.g
ACCDH899263DH899264
length9951,103
definitionDH899263|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K08, 5' end.DH899264|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttagaataggtaaagatcttttcctactctgttggtggccat
tttgtcttattgaaggtgtcttttggcttgcagaaactttgcagtttcat
taggtcccatttgtcaattcttgatcttacagcataagccattgctgttc
tattcaggaatttttcccctgaacccatatatctgaggcttttccctact
ttctcctctttaagtttcagtgtctctggtttgatgtggagttccttaat
ccacttagatttgacctaagtacaagtagataggaatgttcaattcgcat
tcttctacatgataaccaccagttgtgccagccccatttgttgaatatgc
tgtcttttttccactggatggttttagctcccttgtcaaatatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattctattccatttttc
tacttgtctgtggctataccagtaccatgcagttttcatcacaattgctc
agctttccgtcaggcatggtgattcaaccagaggtttttttatccttgag
cagagtttttgctatcctaggttttttgttactccagatgaatttgcaga
ttgccctttctaattcattgaagaattaagtttgaatttttatggggatt
gcattgaatctgtagattgcttttggcaagatagccatttttactatatt
gatcctgccaatccatgagcatgggaaatctttccatcttctgagatctt
ctttaatttctttcttgagagattcaaagttcttatcatacagatctttc
acttccttacttagagtcacaccaaggtattttatatcatttgtgagtat
tgagaagggtgttgtttccctaatttctttctcagcctgtttatc
gaattctttatatattttggaaattagccctctatcaaatgtggggtttg
tgaggaaattttccccaatatgtaggctgtgatttctcctattgactgtg
tctttttgctgccttacagaagctgttcaacttcattgaagtcctattta
tcaattgctggtcttagagcctgagccattggatttctgtgacaatgagt
tgtagactctttcccattttctcttctattagattcaatatgtctggttt
tatgtagaggtccttgattcacttggacttggtctttgtaaaaggtgaaa
aatatgaatcaattttcatttttctacatacagactgccagtttaaccaa
catcatttattgaagatgctttctttttccaattgtaagtttttggcttc
tatgccaaagattaagtgtccataagtatgtgggtttatttctgtgtaat
cagttctattcaatttatcaacacatctgtccctataccaataccatgtg
gtttttatcactattactctgtaatacagcttgatgtcagagatcatggt
tcccccagaagttcttttggtgttaagaattgtttttactatcttggggt
ttttgtttttgtttttgttttgttttgtaattttgtatgaaattgagaat
tgttctttccatgtttgtgaagaattttgttggaatttgatggggattgc
accgaatctgtagattgcttttggtaggatggccatttttactatgttaa
tccaaccaatccttgaacattagagatatttctatcttttgaagtcttct
tcaatttctttctagagagacttgaaggtcttgtcatatagatctttaac
ttgtttaattaaaggtacactaagatattttatatcatttgtgactattg
tgaaggtgttgtttccctattttctttctcactctgtttatcatttgtat
aaaggaaggctactgatttctttgtgttaagtttatatcagccactttgc
tgagttgattatcagctgtagaaatcttctggtaaattttggggttgcat
ttgttacctatttgagaagataagaaaatccagggtcctaccctatatta
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-085K08.b_46_558 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATATTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||||||||||| |||||||||||| ||||||||||||||| ||
seq2  GTGGAAAAAAGACAGCATATTCAACAAATGGGGCTGGCACAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||||||||||||  || |||||||| |||||||| ||
seq2  TATCATGTAGAAGAATGCGAATTGA-ACATTCCTATCTACTTGTACTTAG  149

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| |||||| |||||||||||||||||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATCAAACCAGAGACACTGAA  199

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      ||||| |||||||||||| |||||||||||   | ||||||   ||||||
seq2  ACTTAAAGAGGAGAAAGTAGGGAAAAGCCTCAGATATATGGGTTCAGGGG  249

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| |||||||||||||||||| |||||||||||  ||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTATGCTGTAAGATCAAGAATT  299

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      |||||||||||||| |||||||||||||| ||||||||| ||||||||||
seq2  GACAAATGGGACCTAATGAAACTGCAAAGTTTCTGCAAGCCAAAAGACAC  349

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      | |||||||||||||| || |||||||||| | ||||| |||||||||||
seq2  CTTCAATAAGACAAAATGGCCACCAACAGAGTAGGAAAAGATCTTTACCT  399

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAG  449

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGA  498

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  513