BAC Information

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BAC

Clone NameB6Ng01-085P09
Chromosome3 (Build37)
Map Location 39,749,826 - 39,751,007
singlet/doubletsinglet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085P09.bB6Ng01-085P09.g
ACCDH899490DH899491
length1,2621,174
definitionDH899490|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P09, 5' end.DH899491|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggtcttccggatgtggtcccagagcttttcccactgatttctc
tctccagtcctattggttgatgctaaaaattacggtcagttaggttaaat
aaatcaaatttgcaaagacttctttttctacttttttaaattattgaaaa
taataaatgtttataaaattggtgtgaaaagactccatctgagcagatgt
actagtgcataaattgcctgtgactcctggattattttaaatgaaattca
aaacattacataattcaagaataaatattttgctgtgataatcaaatgca
aatattttttatccatacacaatgctattatcacacttaaaatcacattt
ttagtaacctcaagtatgctgtcttactcaattttaactgtcaacttgac
agatacctagagtcatctgcaagaggaaacctcaactgaagaattgccca
gatcagattaacctgtagacacatttgtggcattttcttatgtgctaact
gataaacataggatcagtgcacaacatgggcagagccattccggggcagg
tagatttctgctgtataagaaatgagggtgaacatgtgcagggaaggaaa
atggtagcagtgttctccatggcctatgtgtcagtctcctgccttgagtt
ccttgatgatgagctttccttggtgacagactgtagactgttagataaaa
taaaactcttgtccttctggtctgagccagtgccctgagcaaaccttggg
tgtaagctctgtacccaatcccaagcacccagaggaagctggattctcag
tagctctaacatacccaggatcataggtgaggaggccacaacatccactt
caaacgcagagtaactaggacccctgggaatccagggacacaggaacccc
tgcttaaccagtggtacaggttctccagtctgagccagtgccctgagcag
accttgagcaatagctccacacaggaccacatacccagaggaagcttgac
tcccaggtgctgtacacacaggatcataggatcacaggatcttcagagct
tgtcacccaagatttcagattgcagaagcagctgactagacttcttatcc
caggatcttcagatcacagacacagaaacagctagaactctcttgattct
gacacagccaagaatatatgaaagaacaggcttcatcgacatggcataag
gtgagcctagagattaccactgctgaggcacatctgaattacagccagct
agaagatgcgat
gaattcccccatccacactggcaggaattgcattagcaaattagcaacaa
atattaaaatagaagctatgtgtcaggattctgttcttgagatctaattt
tgaagaagctgttgttaaaaaaaaaatacttctttaaaaattactacagg
aagattcatgggatgtcctgttctgatcaaaatcagaatgaatataggac
agtaggaaacacaagggaaagataatgttataacattagtaataaaagtg
acaaatgaacatgaagacaagactaagtcacagcaagcaagactcccact
ccccaactcacttggttaaaaaaaactccatcggttttacagaaaagcac
taatctcacagaacatcctgcatcgaggacagtttgcaccacatacattt
tatagttcatgtgcagatatgcataatatcttaatgtgaaaaatagatca
ctttctcctgctcttctgcctttgctctaagcaaacaaacctatttgcct
caagcagtcttcacagatctccttaactggtatgaagttggtgaacaaac
atctcaggcagtggtcacaactgatttttaaagtcccagaattagataga
aaaatgacactgagcctgaaggagacccttagctgttctgcaagtgtgat
ggacattgttgacatggagcatactgaggacgacgaagtaggaaactgct
gtttaaggcatccagctgaggtccttggtgagtgaatctcttggcaacta
gaccagaatgcaagacttctgaccattttctcatgtgtcctggggacagt
gaggtaacccagctgactgtgctggtgagctgtttccttttctcgctcca
ccctagctgctgtgatcacaaagccctagcccatagtaagcaccttatct
cccatgttccctctgcctgcctcatctccactttggttgtttaagaacac
acatgtgaaggatgtctcttccttagagctcctagaacttgctctgcttt
gtacctgaatgcttgctctgagattttctaaggcacttcttctcatttac
atttctgcaaatgttcctctggcaagaatgttcagttgttgcctgcttgc
ctgaataattttactattatacgatttttctgcgtaggtattgtacttac
gggggctgcgatattctcttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39749826_39751007
seq2: B6Ng01-085P09.g_70_1242

seq1  GAATTCCCCCATCCACACTGGCAGGAATTGCATTAGCAAATTAGCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCATCCACACTGGCAGGAATTGCATTAGCAAATTAGCAACAA  50

seq1  ATATTAAAATAGAAGCTATGTGTCAGGATTCTGTTCTTGAGATCTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAATAGAAGCTATGTGTCAGGATTCTGTTCTTGAGATCTAATTT  100

seq1  TGAAGAAGCTGTTGTTAAAAAAAAAATACTTCTTTAAAAATTACTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGCTGTTGTTAAAAAAAAAATACTTCTTTAAAAATTACTACAGG  150

seq1  AAGATTCATGGGATGTCCTGTTCTGATCAAAATCAGAATGAATATAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATGGGATGTCCTGTTCTGATCAAAATCAGAATGAATATAGGAC  200

seq1  AGTAGGAAACACAAGGGAAAGATAATGTTATAACATTAGTAATAAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAAACACAAGGGAAAGATAATGTTATAACATTAGTAATAAAAGTG  250

seq1  ACAAATGAACATGAAGACAAGACTAAGTCACAGCAAGCAAGACTCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAACATGAAGACAAGACTAAGTCACAGCAAGCAAGACTCCCACT  300

seq1  CCCCAACTCACTTGGTTAAAAAAAACTCCATCGGTTTTACAGAAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCACTTGGTTAAAAAAAACTCCATCGGTTTTACAGAAAAGCAC  350

seq1  TAATCTCACAGAACATCCTGCATCGAGGACAGTTTGCACCACATACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCACAGAACATCCTGCATCGAGGACAGTTTGCACCACATACATTT  400

seq1  TATAGTTCATGTGCAGATATGCATAATATCTTAATGTGAAAAATAGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTCATGTGCAGATATGCATAATATCTTAATGTGAAAAATAGATCA  450

seq1  CTTTCTCCTGCTCTTCTGCCTTTGCTCTAAGCAAACAAACCTATTTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTGCTCTTCTGCCTTTGCTCTAAGCAAACAAACCTATTTGCCT  500

seq1  CAAGCAGTCTTCACAGATCTCCTTAACTGGTATGAAGTTGGTGAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTCTTCACAGATCTCCTTAACTGGTATGAAGTTGGTGAACAAAC  550

seq1  ATCTCAGGCAGTGGTCACAACTGATTTTTAAAGTCCCAGAATTAGATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCAGTGGTCACAACTGATTTTTAAAGTCCCAGAATTAGATAGA  600

seq1  AAAATGACACTGAGCCTGAAGGAGACCCTTAGCTGTTCTGCAAGTGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACACTGAGCCTGAAGGAGACCCTTAGCTGTTCTGCAAGTGTGAT  650

seq1  GGACATTGTTGACATGGAGCATACTGAGGACGACGAAGTAGGAAACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTTGACATGGAGCATACTGAGGACGACGAAGTAGGAAACTGCT  700

seq1  GTTTAAGGCATCCAGCTGAGGTCCTTGGTGAGTGAATCTCTTGGCAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGCATCCAGCTGAGGTCCTTGGTGAGTGAATCTCTTGGCAACTA  750

seq1  GACCAGAATGCAAGACTTCTGACCATTTTCTCATGTGTCCTGGGGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAATGCAAGACTTCTGACCATTTTCTCATGTGTCCTGGGGACAGT  800

seq1  GAGGTAACCCAGCTGACTGTGCTGGTGAGCTGTTTCCTTTTCTCGCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACCCAGCTGACTGTGCTGGTGAGCTGTTTCCTTTTCTCGCTCCA  850

seq1  CCCTAGCTGCTGTGATCACAAAGCCCTAGCCCATAGTAGGCACCTTATCT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCTAGCTGCTGTGATCACAAAGCCCTAGCCCATAGTAAGCACCTTATCT  900

seq1  CCCATGTTCCCTCTGCCTGCCTCATCTCCACTTTGGTTGTTTAAGAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTCCCTCTGCCTGCCTCATCTCCACTTTGGTTGTTTAAGAACAC  950

seq1  ACATGTG-AGGATGTCTC-TCCTCAGAGCTCCTAG-ACTTGCTCTGCTTT  997
      ||||||| |||||||||| |||| ||||||||||| ||||||||||||||
seq2  ACATGTGAAGGATGTCTCTTCCTTAGAGCTCCTAGAACTTGCTCTGCTTT  1000

seq1  GTACCTGGAATGCTTTGCTCTGAGATTTTTCTAAAGGCCACTTCTCCTCA  1047
      |||||| |||||| ||||||||||| ||||||||  | ||||||| ||||
seq2  GTACCT-GAATGC-TTGCTCTGAGA-TTTTCTAA--GGCACTTCTTCTCA  1045

seq1  TTTACATTTCTGCCAAATGTTTCCTCT-GCAGAGATGTTCAGTTTGGTTG  1096
      |||||||||||| |||||| ||||||| |||   ||||||||||  ||||
seq2  TTTACATTTCTG-CAAATG-TTCCTCTGGCAAGAATGTTCAGTT--GTTG  1091

seq1  GCTCTGCTGCCCTGATTATTTTACCTATTTATAACGATTTTTCTGCTGAT  1146
         |||||  ||||| || |||  ||| |||| |||||||||||||  | 
seq2  --CCTGCTTGCCTGAATAATTTTACTA-TTAT-ACGATTTTTCTGCGTAG  1137

seq1  GTATTGTACTTAC-TGGGCTGCGTATATCCTCTTAAA  1182
      |||||||||||||  |||||||| |||| ||||||||
seq2  GTATTGTACTTACGGGGGCTGCG-ATATTCTCTTAAA  1173