BAC Information

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BAC

Clone NameB6Ng01-086F02
Chromosome3 (Build37)
Map Location 89,569,530 - 89,754,781
singlet/doubletdoublet
Overlap geneUbe2q1, LOC668087, She, Il6ra, Atp8b2
Upstream geneSyt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2
Downstream geneLOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086F02.bB6Ng01-086F02.g
ACCDH899748DH899749
length1,2131,104
definitionDH899748|Mus musculus domesticus DNA, BAC clone: B6Ng01-086F02, 5' end.DH899749|Mus musculus domesticus DNA, BAC clone: B6Ng01-086F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,569,530 - 89,570,742)(89,753,667 - 89,754,781)
sequence
gaattccagttcctcagggaatctgtgactgacaaaagattgagttaggt
accttgccagactcttctagaatgaaacacttctatagcaaccactgcct
ttacagtcagagtatgaactagcatagggcctggcttgagatgggggctt
aacaggagaattgtaatgcacgatagacatatcttaatatgtataagttc
aggcagaaacaacttatttaacaaatgcccagtgccatcactatccaggg
gatagtgatacagcttggtgacagaatgcttgcctagcatgtgcaaagcc
ttaaatacaatcaccagcatggaagaaaaagggcttggggaagagcctga
gaggaaaaggcagcaaagcacaggagaggaagcaagctgacagggagaag
aacaaccacagtgcatgtgaaggtggactgaaatctatgccataggtcca
gggcagggtatgtgtgtgtacaataactaattcagaaagagatctgaaca
ccaagaagtgaagcctagcaagaaggcaaagggtgtgtgcagtcacatca
cagtgaagcctagcaagaaggcaaagggtgtgtgcagtcacatcacagtg
aagcctaacaagaaggcaaagggtgtgtgcagtcacatcacagtgaagcc
tagcaagaaggcaaagggtgtgtgcagtcacatcacagtgaagcctagca
agaaggcaaagggtgtgtgcagtcacatcacttggggaaaggttcaaggg
ttagatctgtcttcaacaatttagatcaacacaggttgagtatgtccttt
gagctcacaattgtttggtacagaggaggcaatgatcaaaaagacttagt
tccagatattaaagagaccacactagtagaagattactagacactgtgct
gactgttaataggaagacaaacatgagcactgtagaagctgggagcaggg
aaggcacaaggactggataggacataagtgaaagcagagctgactcatag
caaggctagctcacaggtattcacatcccgagacagcatctcagtggatg
cagcatggtggaggaagctgacaatgtcttctgttgctaacttctggagt
gctaattcttttcctatgatggactgaaaggctaactcccctttaagaat
gaaccacatctcgggaaccatccattgcctctaatgagcatacctctaca
ttccctatcttgt
gaattcactttgtagaattcaggctggcctcgaactcagaaatctgcctg
cctctgcctcccaagtgctgggattaaaggcatgtgccaccatgcctagc
tccaggacaacattcttagacatctcatttttttgtctcctaacaagatc
ctgataggagccaagttgaagcagggttccaggtgtgtggcctactgctt
ggccatcctggacccagacaaaggatcttttctgggaatgttaacagccc
tgatgctaaaagtaatgactagctggaagtcccttgcccttgtgacatgg
tgtcgctcccacgttctctaggcctctgtatcccagggagtgaagccctg
gcctatgctgggccgtgaggagtgacgaggcctgggcttttccccacgtg
acctcttggagttggctccgtgttgccacggcatgcacagtgccctcatt
atttctctcttttctctcccttccctcttgcattttctcttatttttctc
tgcatggttactgtatttagtcctgaggtaagaactggccaagcgccgcg
tgtccagtccctcttccttctctgcctgtgccatctgtcctgcctgccca
gagcctttgcacctttctgtgtggagagcgtcaggagggtcgggttggga
gctactgtgtcagtggtacacaagcagctccgcctgcaggcttccctgcc
ccttcccatccaggttcctgtacccaggtgtcttctccattcctgtttct
ccccaggccaacgcctgcagccaagacccctgtgggtgggatatttcctt
ccctctctgcttcccaggccttacctcctgtcccctatgcagtgtggaag
tcatccgcttgggccacagctactttatcaactgggacaagaagatgttc
tgcatgaagaagcggacccctgcggaggcccgtaccacactctgaacgaa
gagctgggccagtggagtacatcttcttctgataagacggcaccctaccc
agaacaatcatgttgtcacaaatgctcatcaacggcacaagctatggtaa
gctcagtcctgaggcttgaagaaagtggaatgggctcttgttgtgctgaa
cgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89569530_89570742
seq2: B6Ng01-086F02.b_47_1259

seq1  GAATTCCAGTTCCTCAGGGAATCTGTGACTGACAAAAGATTGAGTTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCCTCAGGGAATCTGTGACTGACAAAAGATTGAGTTAGGT  50

seq1  ACCTTGCCAGACTCTTCTAGAATGAAACACTTCTATAGCAACCACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCAGACTCTTCTAGAATGAAACACTTCTATAGCAACCACTGCCT  100

seq1  TTACAGTCAGAGTATGAACTAGCATAGGGCCTGGCTTGAGATGGGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCAGAGTATGAACTAGCATAGGGCCTGGCTTGAGATGGGGGCTT  150

seq1  AACAGGAGAATTGTAATGCACGATAGACATATCTTAATATGTATAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGAATTGTAATGCACGATAGACATATCTTAATATGTATAAGTTC  200

seq1  AGGCAGAAACAACTTATTTAACAAATGCCCAGTGCCATCACTATCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAACAACTTATTTAACAAATGCCCAGTGCCATCACTATCCAGGG  250

seq1  GATAGTGATACAGCTTGGTGACAGAATGCTTGCCTAGCATGTGCAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGATACAGCTTGGTGACAGAATGCTTGCCTAGCATGTGCAAAGCC  300

seq1  TTAAATACAATCACCAGCATGGAAGAAAAAGGGCTTGGGGAAGAGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACAATCACCAGCATGGAAGAAAAAGGGCTTGGGGAAGAGCCTGA  350

seq1  GAGGAAAAGGCAGCAAAGCACAGGAGAGGAAGCAAGCTGACAGGGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGGCAGCAAAGCACAGGAGAGGAAGCAAGCTGACAGGGAGAAG  400

seq1  AACAACCACAGTGCATGTGAAGGTGGACTGAAATCTATGCCATAGGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACAGTGCATGTGAAGGTGGACTGAAATCTATGCCATAGGTCCA  450

seq1  GGGCAGGGTATGTGTGTGTACAATAACTAATTCAGAAAGAGATCTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGTATGTGTGTGTACAATAACTAATTCAGAAAGAGATCTGAACA  500

seq1  CCAAGAAGTGAAGCCTAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTGAAGCCTAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCA  550

seq1  CAGTGAAGCCTAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGCCTAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTG  600

seq1  AAGCCTAACAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAACAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTGAAGCC  650

seq1  TAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTGAAGCCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGAAGGCAAAGGGTGTGTGCAGTCACATCACAGTGAAGCCTAGCA  700

seq1  AGAAGGCAAAGGGTGTGTGCAGTCACATCACTTGGGGAAAGGTTCAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAAGGGTGTGTGCAGTCACATCACTTGGGGAAAGGTTCAAGGG  750

seq1  TTAGATCTGTCTTCAACAATTTAGATCAACACAGGTTGAGTATGTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTGTCTTCAACAATTTAGATCAACACAGGTTGAGTATGTCCTTT  800

seq1  GAGCTCACAATTGTTTGGTACAGAGGAGGCAATGATCAAAAAGACTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACAATTGTTTGGTACAGAGGAGGCAATGATCAAAAAGACTTAGT  850

seq1  TCCAGATATTAAAGAGACCACACTAGTAGAAGATTACTAGACACTGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATATTAAAGAGACCACACTAGTAGAAGATTACTAGACACTGTGCT  900

seq1  GACTGTT-ATAGGAAGACAAACATGAGCACTGTAGAAGCTGGGAGCAGGG  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTAATAGGAAGACAAACATGAGCACTGTAGAAGCTGGGAGCAGGG  950

seq1  AAGGCAACAAGGACTGGATAGGACATAAGTGAAAGCAGAGCTGACTCATA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGC-ACAAGGACTGGATAGGACATAAGTGAAAGCAGAGCTGACTCATA  999

seq1  GCAAGGCTAGCTCACAGGTATTCCACATCCCGAGACAGCATCTCCAGTGG  1049
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GCAAGGCTAGCTCACAGGTATT-CACATCCCGAGACAGCATCT-CAGTGG  1047

seq1  ATGCAGCATGGTGGAGGAAGGCTGACAATGTCTTCTGTTGCTAAACTTCC  1099
      ||||||||||||||||||| |||||||||||||||||||||| ||||| |
seq2  ATGCAGCATGGTGGAGGAA-GCTGACAATGTCTTCTGTTGCT-AACTT-C  1094

seq1  TGGAGTGCTTACTCTTTTCCTGATGATGGACTG-AAGGCT-ACTCCCCTT  1147
      ||||||||| | ||||||||| ||||||||||| |||||| |||||||||
seq2  TGGAGTGCTAATTCTTTTCCT-ATGATGGACTGAAAGGCTAACTCCCCTT  1143

seq1  TTAG-ATGA--CACA-CTCGGG-ACCATTCATTGCCTTCTAAATGA-CAG  1191
      | || ||||  |||| |||||| ||||| ||||||| ||| ||||| || 
seq2  TAAGAATGAACCACATCTCGGGAACCATCCATTGCC-TCT-AATGAGCAT  1191

seq1  ACTTCTACATCTCCTATCTTGT  1213
      || |||||||  ||||||||||
seq2  ACCTCTACATTCCCTATCTTGT  1213

seq1: chr3_89753667_89754781
seq2: B6Ng01-086F02.g_67_1170 (reverse)

seq1  AGCG-TCAGCACAACAAAGGAAGCCCCATTCCACTGTCCTTCCAGCCCTC  49
      |||| ||||||||||||  |    ||||||||||| | |||| || ||||
seq2  AGCGTTCAGCACAACAAGAG----CCCATTCCACT-TTCTTCAAG-CCTC  44

seq1  AGGACTGAGCCTTACCATAGCTGTGGCCGTTGATGGAGCATTTGTTGAAC  99
      ||||||||| ||||||||||||   ||||||||| ||||||||||   ||
seq2  AGGACTGAG-CTTACCATAGCTTGTGCCGTTGAT-GAGCATTTGT--GAC  90

seq1  ACCATGA-TGTTCTGGGTAAGGGTGCCCGTCTTATCAG-AGAAGATGTAC  147
      | ||||| |||||||||| |||||| |||||||||||| |||||||||||
seq2  AACATGATTGTTCTGGGT-AGGGTG-CCGTCTTATCAGAAGAAGATGTAC  138

seq1  TCCACCTGGCCCAGCTCTTCGTTCAGAGTGGTGGTACGGGCCTCCGCAGG  197
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCA-CTGGCCCAGCTCTTCGTTCAGAGT-GTGGTACGGGCCTCCGCAGG  186

seq1  GGTCCGCTTCTTCATGCAGAACATCTTCTTGTCCCAGTTGATAAAGTAGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGCTTCTTCATGCAGAACATCTTCTTGTCCCAGTTGATAAAGTAGC  236

seq1  TGTGGCCCAAGCGGATGACTTCCACACTGCATAGGGGACAGGAGGTAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCAAGCGGATGACTTCCACACTGCATAGGGGACAGGAGGTAAGG  286

seq1  CCTGGGAAGCAGAGAGGGAAGGAAATATCCCACCCACAGGGGTCTTGGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGCAGAGAGGGAAGGAAATATCCCACCCACAGGGGTCTTGGCT  336

seq1  GCAGGCGTTGGCCTGGGGAGAAACAGGAATGGAGAAGACACCTGGGTACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGTTGGCCTGGGGAGAAACAGGAATGGAGAAGACACCTGGGTACA  386

seq1  GGAACCTGGATGGGAAGGGGCAGGGAAGCCTGCAGGCGGAGCTGCTTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGGATGGGAAGGGGCAGGGAAGCCTGCAGGCGGAGCTGCTTGTG  436

seq1  TACCACTGACACAGTAGCTCCCAACCCGACCCTCCTGACGCTCTCCACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGACACAGTAGCTCCCAACCCGACCCTCCTGACGCTCTCCACAC  486

seq1  AGAAAGGTGCAAAGGCTCTGGGCAGGCAGGACAGATGGCACAGGCAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGCAAAGGCTCTGGGCAGGCAGGACAGATGGCACAGGCAGAGA  536

seq1  AGGAAGAGGGACTGGACACGCGGCGCTTGGCCAGTTCTTACCTCAGGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGACTGGACACGCGGCGCTTGGCCAGTTCTTACCTCAGGACT  586

seq1  AAATACAGTAACCATGCAGAGAAAAATAAGAGAAAATGCAAGAGGGAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTAACCATGCAGAGAAAAATAAGAGAAAATGCAAGAGGGAAGG  636

seq1  GAGAGAAAAGAGAGAAATAATGAGGGCACTGTGCATGCCGTGGCAACACG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGAGAGAAATAATGAGGGCACTGTGCATGCCGTGGCAACACG  686

seq1  GAGCCAACTCCAAGAGGTCACGTGGGGAAAAGCCCAGGCCTCGTCACTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACTCCAAGAGGTCACGTGGGGAAAAGCCCAGGCCTCGTCACTCC  736

seq1  TCACGGCCCAGCATAGGCCAGGGCTTCACTCCCTGGGATACAGAGGCCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGCCCAGCATAGGCCAGGGCTTCACTCCCTGGGATACAGAGGCCTA  786

seq1  GAGAACGTGGGAGCGACACCATGTCACAAGGGCAAGGGACTTCCAGCTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGTGGGAGCGACACCATGTCACAAGGGCAAGGGACTTCCAGCTAG  836

seq1  TCATTACTTTTAGCATCAGGGCTGTTAACATTCCCAGAAAAGATCCTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTTTAGCATCAGGGCTGTTAACATTCCCAGAAAAGATCCTTTG  886

seq1  TCTGGGTCCAGGATGGCCAAGCAGTAGGCCACACACCTGGAACCCTGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCAGGATGGCCAAGCAGTAGGCCACACACCTGGAACCCTGCTT  936

seq1  CAACTTGGCTCCTATCAGGATCTTGTTAGGAGACAAAAAAATGAGATGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGCTCCTATCAGGATCTTGTTAGGAGACAAAAAAATGAGATGTC  986

seq1  TAAGAATGTTGTCCTGGAGCTAGGCATGGTGGCACATGCCTTTAATCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTTGTCCTGGAGCTAGGCATGGTGGCACATGCCTTTAATCCCA  1036

seq1  GCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGA  1086

seq1  ATTCTACAAAGTGAATTC  1115
      ||||||||||||||||||
seq2  ATTCTACAAAGTGAATTC  1104