BAC Information

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BAC

Clone NameB6Ng01-086K06
Chromosome3 (Build37)
Map Location 65,416,630 - 65,623,868
singlet/doubletdoublet
Overlap geneLOC545530, LOC100040978, EG624866
Upstream gene4930518C23Rik, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K06.bB6Ng01-086K06.g
ACCDH899983DH899984
length1,183428
definitionDH899983|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K06, 5' end.DH899984|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,622,671 - 65,623,868)(65,416,630 - 65,417,063)
sequence
gaattctgctaccagatttttcaggtcttcaatttcttttttcttcgatt
cagactcttctgtgtattgtgcatgggattcatgcagtttttcttggaga
gaggccacttccagcctcaggtcctttgtagcatctgcgattaggtcacc
tatctataagataagtctcacgttagtatacagacaagtgtgctgttaag
tttcttctaataaaccagtgtgcttgtatcccatgtcatatataggcctt
cagatagttttaagtcaacacagagttttatttattttcctaaaatggta
tcctattaactacttgggcacctttggaaatatttaaatctctgtgattg
aatccagctgccaaaagtaactcaagttttcacaaacagatgggagaggg
catggctgggctctggaacctccaggtgcctgactggtttttggagacac
agaaagagaacaccacagttgtgtcccattcacaccagaacaccaagttc
gcctgggacatattttttctttcttatatatagatagatgtaccccagac
actagcttagtcttctatagctgcactctcccacgtcttgtgatcataga
aattctgtactgttctaaatgtaatgacagtggggtgccagtaaatgttt
aaaaataccctcccctcacccccatctctctcaggtcaactttgtatcta
attttaacagtgaaatgcctttaccactatggctgatctgtcacaactgg
tgacttagctgggatgagcattgcaggctctggaaagccaggactggcta
cagagcattggcaattgaaccactatgttggaagaagtatcacatttgag
tgaactgaactgaaagacaagtggccactctggtgtcattatggcggttc
tagaaaatgccaggacacggcgcaaaggtatcgcctctcaccttacacaa
gaacatgagacaataattcagggactttctgcccaaatcatccctttgga
atggaaagactttttctccttagaaagagaaaatttatcttggtggctca
tgctgaaatcctaagcaagcagagaagccactgtgggttacggcagccac
agctttctgggggagtgacgatcatgtgagctattggttataaactggaa
ggaacaaacatcgcagccaacagcagccgaaca
agaagtttttcactctggcagagttaagcacagacggaatgtaaggcgtt
cgtcttacagaagcaatgtctgctgcagatggaacaaagaggtcattgct
tggatttttgaatttcaaaatagttgtttaaatcctttgggggatgaaac
agcctgaaggcaagcgctctgattttcaaaagcctgttttgagaaagaaa
aagacccaaagctctaaaagccaagtgtggagacatggtccgttctaagc
aaccatggagtaggaacatggtggcataggatataagcaagttccaggct
cacaggacaaacgaaaagccgcaggagttgagaggtagctccaagcagaa
atgccagcctctagtgtttaccagatttccttccgcattcatctctcaag
ccgacctgggggtggggtggggtggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65622671_65623868
seq2: B6Ng01-086K06.b_43_1225 (reverse)

seq1  TGTTCTGCTGCTGTTTGCTTGCCGATGGTTTGTTCCCCTTTTCAGTTTAT  50
      ||||| ||||||||| |||   |||| |||||||||   || ||||||||
seq2  TGTTCGGCTGCTGTTGGCT--GCGAT-GTTTGTTCC---TTCCAGTTTAT  44

seq1  AACCCAATAGCTCACACTGATCTGTCACT-CCCCAGAAAGCTGTGGCTGC  99
      || ||||||||||||| ||||| |||||| ||||||||||||||||||||
seq2  AA-CCAATAGCTCACA-TGATC-GTCACTCCCCCAGAAAGCTGTGGCTGC  91

seq1  CGGTAGACCCACAGTGGCTCTCTTGCCTTGCTTAGGATTTCAGGCATGAG  149
      | ||| ||||||||||||| |||   |||||||||||||||| |||||||
seq2  C-GTA-ACCCACAGTGGCT-TCTCTGCTTGCTTAGGATTTCA-GCATGAG  137

seq1  CCACCAAGATAAATTTTCTCTTTTCTAAGGAGAAAAAGTCTTTTCCATTC  199
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CCACCAAGATAAATTTTCTC-TTTCTAAGGAGAAAAAGTC-TTTCCATTC  185

seq1  CAAAGGGATGATTTGGGCAGAAAGTCCCCTGAATTATTGTCTCATGTTCT  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAAGGGATGATTTGGGCAGAAAGT-CCCTGAATTATTGTCTCATGTTCT  234

seq1  TGTGTAAGGTGAGAGGCGATACCTTTGCGCCGTGTCCTGGCATTTTCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGGTGAGAGGCGATACCTTTGCGCCGTGTCCTGGCATTTTCTAG  284

seq1  AACCGCCATAATGACACCAGAGTGGCCACTTGTCTTTCAGTTCAGTTCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCCATAATGACACCAGAGTGGCCACTTGTCTTTCAGTTCAGTTCAC  334

seq1  TCAAATGTGATACTTCTTCCAACATAGTGGTTCAATTGCCAATGCTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGATACTTCTTCCAACATAGTGGTTCAATTGCCAATGCTCTGT  384

seq1  AGCCAGTCCTGGCTTTCCAGAGCCTGCAATGCTCATCCCAGCTAAGTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCCTGGCTTTCCAGAGCCTGCAATGCTCATCCCAGCTAAGTCAC  434

seq1  CAGTTGTGACAGATCAGCCATAGTGGTAAAGGCATTTCACTGTTAAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGACAGATCAGCCATAGTGGTAAAGGCATTTCACTGTTAAAATT  484

seq1  AGATACAAAGTTGACCTGAGAGAGATGGGGGTGAGGGGAGGGTATTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAAGTTGACCTGAGAGAGATGGGGGTGAGGGGAGGGTATTTTTA  534

seq1  AACATTTACTGGCACCCCACTGTCATTACATTTAGAACAGTACAGAATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACTGGCACCCCACTGTCATTACATTTAGAACAGTACAGAATTT  584

seq1  CTATGATCACAAGACGTGGGAGAGTGCAGCTATAGAAGACTAAGCTAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATCACAAGACGTGGGAGAGTGCAGCTATAGAAGACTAAGCTAGTG  634

seq1  TCTGGGGTACATCTATCTATATATAAGAAAGAAAAAATATGTCCCAGGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTACATCTATCTATATATAAGAAAGAAAAAATATGTCCCAGGCG  684

seq1  AACTTGGTGTTCTGGTGTGAATGGGACACAACTGTGGTGTTCTCTTTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTGTTCTGGTGTGAATGGGACACAACTGTGGTGTTCTCTTTCTG  734

seq1  TGTCTCCAAAAACCAGTCAGGCACCTGGAGGTTCCAGAGCCCAGCCATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAAAAACCAGTCAGGCACCTGGAGGTTCCAGAGCCCAGCCATGC  784

seq1  CCTCTCCCATCTGTTTGTGAAAACTTGAGTTACTTTTGGCAGCTGGATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCATCTGTTTGTGAAAACTTGAGTTACTTTTGGCAGCTGGATTC  834

seq1  AATCACAGAGATTTAAATATTTCCAAAGGTGCCCAAGTAGTTAATAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAGATTTAAATATTTCCAAAGGTGCCCAAGTAGTTAATAGGAT  884

seq1  ACCATTTTAGGAAAATAAATAAAACTCTGTGTTGACTTAAAACTATCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTAGGAAAATAAATAAAACTCTGTGTTGACTTAAAACTATCTGA  934

seq1  AGGCCTATATATGACATGGGATACAAGCACACTGGTTTATTAGAAGAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATATATGACATGGGATACAAGCACACTGGTTTATTAGAAGAAAC  984

seq1  TTAACAGCACACTTGTCTGTATACTAACGTGAGACTTATCTTATAGATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCACACTTGTCTGTATACTAACGTGAGACTTATCTTATAGATAG  1034

seq1  GTGACCTAATCGCAGATGCTACAAAGGACCTGAGGCTGGAAGTGGCCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAATCGCAGATGCTACAAAGGACCTGAGGCTGGAAGTGGCCTCT  1084

seq1  CTCCAAGAAAAACTGCATGAATCCCATGCACAATACACAGAAGAGTCTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAAAAACTGCATGAATCCCATGCACAATACACAGAAGAGTCTGA  1134

seq1  ATCGAAGAAAAAAGAAATTGAAGACCTGAAAAATCTGGTAGCAGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGAAAAAAGAAATTGAAGACCTGAAAAATCTGGTAGCAGAATTC  1183

seq1: chr3_65416630_65417063
seq2: B6Ng01-086K06.g_69_502

seq1  GAATTCAGAAGTTTTTCACTCTGGCAGAGTTAAGCACAGACGGAATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTTTTTCACTCTGGCAGAGTTAAGCACAGACGGAATGTAA  50

seq1  GGCGTTCGTCTTACAGAAGCAATGTCTGCTGCAGATGGAACAAAGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCGTCTTACAGAAGCAATGTCTGCTGCAGATGGAACAAAGAGGTC  100

seq1  ATTGCTTGGATTTTTGAATTTCAAAATAGTTGTTTAAATCCTTTGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGGATTTTTGAATTTCAAAATAGTTGTTTAAATCCTTTGGGGGA  150

seq1  TGAAACAGCCTGAAGGCAAGCGCTCTGATTTTCAAAAGCCTGTTTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGCCTGAAGGCAAGCGCTCTGATTTTCAAAAGCCTGTTTTGAGA  200

seq1  AAGAAAAAGACCCAAAGCTCTAAAAGCCAAGTGTGGAGACATGGTCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGACCCAAAGCTCTAAAAGCCAAGTGTGGAGACATGGTCCGTT  250

seq1  CTAAGCAACCATGGAGTAGGAACATGGTGGCATAGGATATAAGCAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAACCATGGAGTAGGAACATGGTGGCATAGGATATAAGCAAGTTC  300

seq1  CAGGCTCACAGGACAAACGAAAAGCCGCAGGAGTTGAGAGGTAGCTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCACAGGACAAACGAAAAGCCGCAGGAGTTGAGAGGTAGCTCCAA  350

seq1  GCAGAAATGCCAGCCTCTAGTGTTTACCAGATTTCCTTCCGCATTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGCCAGCCTCTAGTGTTTACCAGATTTCCTTCCGCATTCATCT  400

seq1  CTCAAGCCGACCTGGGGGTGGGGTGGGGTGGACG  434
      ||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCGACCTGGGGGTGGGGTGGGGTGGACG  434