BAC Information

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BAC

Clone NameB6Ng01-086M08
Chromosome3 (Build37)
Map Location 137,140,736 - 137,281,065
singlet/doubletdoublet
Overlap geneEG229862
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn
Downstream geneDdit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M08.bB6Ng01-086M08.g
ACCDH900079DH900080
length1,2061,198
definitionDH900079|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M08, 5' end.DH900080|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,279,829 - 137,281,065)(137,140,736 - 137,141,963)
sequence
gaattctaggaaatccaaagtcagtgagggccgagtctgggaaggacctc
tcttgtgttgttctgtggagaaggcagaagaacagaagagcattcatgag
agaggatgaaagggacaggggatggaaaagttgagggcaaggggggaaga
aagaaggaggagaggacatggaagagggagagtggctattcttcgttagg
agctcagttgtgtggtaactagtcccctcctgtgataactcataaggatt
gaaccctcatgaccatgcttccccttcaaaggcctaatgctcagcgcttt
ctgcactgggggattaattctctgcacaatgaattctggggacatattca
aactgcagaagcgtgaggctctcagaggtggtatgggtaaagcaagggcg
ctgacacatacatgctaatgtattttttgaaggatattctgtggcctgat
tacacactgtgtgtttcatgggcactgcttagaaaaatttcaagtagcac
atagtctcaggcttcctcctacaaccactgaaccagaacctgctttgaga
caagatctcagacgatagccaaagtttaggaagtggatggtttcagttga
aaaggaatgacgaaaccattaaagctatttatgactcataagacaatttc
caggccagttaataaaaacattataaagcatgtagtatatgaaaatgcat
cctgcaggtaaggtagatcaactcctgcccagtcatatgtttgttgagcc
tctgttattttagtcagatataatggctttattggatctcaactatcttg
tgtggttcctagcaattgtgcttggctcataaaactgcacacagctctgc
gaggtagaccgcttgacagaaaggaccatattatataaaaactaagtcct
acttttaataaacctgaggcactataacatcctgagttgtgttccaactc
aatgacatagaaagctacagcaatgcctgagagacttacattggaaattg
tgtttaaagggtctgtagcagtgtaaagccattaggaagaatgatatacg
gaagatataccacatctttattacttctgattactagagcggtaaatacc
atacctatgcacatatttcttctgctgtattattttacgaaataccttta
acgttgggattggatatgcttggtccggactgtttaggaattgacctggt
ggcgga
gaattccaggccaccctgagctacagtgtaagaccctgtatcaaaaacca
aacccaccaaagcctaaaaccagcaagggaaggctgtgacattcgtcttc
cctcaccatggtggttgtgggctggtgtgttcacagcagcagtttgaatg
gagctgtgttatttgcaaagttatctgtaggctgtaggaatttcctctgg
gtgtttttttagtaagccatgcagaatattttcctgacctcctttcgtgc
acaggtgctgtgtcctgtgtgctgcaggaactctggtggaacttggcagt
cttagaagcctgctacccaacgcttaagaaaaattcttacattttctact
ttggtcagtgttgggtctaatattttttcagcctaccttcagaatcctca
gataatacaacatgtgaacaagatagatctctgtgacaagaaatgttggt
taggtttagttgaaattattatttaagcagtggtagcaatatataagttt
taaaaacttgtcctaaaaaccttgaagcatttcctacattatccatactg
tctgtttatacatgtgtgtgttaatgttcattaatctatttgattatatt
ttcattgcacataagataacacaacagcaataaaatcattaccatagagg
gtagagagatgtctcagtggttaagagcatgtagtactcttccagaggac
cttagttgaattctttaactattggtaatcccagctctagcaagtctgat
accctatttggcctccatagtatctgtactcctatttacagtcccatatt
cagaagcacacacatacacataattaaaaataaatatttttaaaacataa
tcacaaacaaaattgtgcccttaataaatttcaggcaaaagatcctggct
ctgattgactcaaggaagaaatcttgttaccatctatactttgcagataa
atagaaatgtgcttattctatctgtgggctttatgttatatgttttcaga
tgctaataaagctttatgtcaaacagaccagacccacaaacattactcat
aatctttctagtgctctctgagcgaaaaagaacattaatggtcatcaatg
agaggcgatctgattgaaatcctcatcactgtctccgaactcttggcttc
aactcaggttagattaggccgaaggtaccatctttgtgaataattggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_137279829_137281065
seq2: B6Ng01-086M08.b_47_1252 (reverse)

seq1  TCCGCCACCACAGTCTATATCTCCCATAAAACAGTCCCGGACACAAGCAT  50
      ||||||||||  ||| ||  ||      ||||||| |||||| |||||||
seq2  TCCGCCACCA-GGTCAATTCCT------AAACAGT-CCGGAC-CAAGCAT  41

seq1  ATTTCAAATCCCAAACACTTTAGAAGATATTTCGTAAAATATAATTACAG  100
      |  || |||||||   || ||| ||| |||||||||||||   | |||||
seq2  A--TCCAATCCCA---ACGTTA-AAGGTATTTCGTAAAAT---AATACAG  82

seq1  CAGAAGAAATATGTGCATAGGTAATGGTATTTACCCGCTCTAGTAAATTC  150
      |||||||||||||||||||||| |||||||||| ||||||||||||  ||
seq2  CAGAAGAAATATGTGCATAGGT-ATGGTATTTA-CCGCTCTAGTAA--TC  128

seq1  AGAAGTAAT-AAGATGT-GTATATCTTTCTGTATTAATTCATTTCTTCCT  198
      ||||||||| ||||||| ||||||| ||| ||||    ||| ||||||||
seq2  AGAAGTAATAAAGATGTGGTATATC-TTCCGTAT---ATCA-TTCTTCCT  173

seq1  AATTGGCTTTACAACTTGCTACAGACCCTTTAAACACATTTTCCAATGTA  248
      || ||||||||||   |||||||||||||||||||||| |||||||||||
seq2  AA-TGGCTTTACA--CTGCTACAGACCCTTTAAACACAATTTCCAATGTA  220

seq1  AGTCTCTTCAGGCATTGCCTTGTAGCTTTCTATGTCATTGAGTTGGAACA  298
      |||||| |||||||||||  ||||||||||||||||||||||||||||||
seq2  AGTCTC-TCAGGCATTGC--TGTAGCTTTCTATGTCATTGAGTTGGAACA  267

seq1  CAACTCAGGATGTTATAGTGCCTCAGGTTTATTAAAAGTAGGACTTAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGGATGTTATAGTGCCTCAGGTTTATTAAAAGTAGGACTTAGTT  317

seq1  TTTATATAATATGGTCCTTTCTGTCAAGCGGTCTACCTCGCAGAGCTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATATGGTCCTTTCTGTCAAGCGGTCTACCTCGCAGAGCTGTG  367

seq1  TGCAGTTTTATGAGCCAAGCACAATTGCTAGGAACCACACAAGATAGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTATGAGCCAAGCACAATTGCTAGGAACCACACAAGATAGTTG  417

seq1  AGATCCAATAAAGCCATTATATCTGACTAAAATAACAGAGGCTCAACAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATAAAGCCATTATATCTGACTAAAATAACAGAGGCTCAACAAA  467

seq1  CATATGACTGGGCAGGAGTTGATCTACCTTACCTGCAGGATGCATTTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACTGGGCAGGAGTTGATCTACCTTACCTGCAGGATGCATTTTCA  517

seq1  TATACTACATGCTTTATAATGTTTTTATTAACTGGCCTGGAAATTGTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACATGCTTTATAATGTTTTTATTAACTGGCCTGGAAATTGTCTT  567

seq1  ATGAGTCATAAATAGCTTTAATGGTTTCGTCATTCCTTTTCAACTGAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCATAAATAGCTTTAATGGTTTCGTCATTCCTTTTCAACTGAAAC  617

seq1  CATCCACTTCCTAAACTTTGGCTATCGTCTGAGATCTTGTCTCAAAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTCCTAAACTTTGGCTATCGTCTGAGATCTTGTCTCAAAGCAG  667

seq1  GTTCTGGTTCAGTGGTTGTAGGAGGAAGCCTGAGACTATGTGCTACTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTTCAGTGGTTGTAGGAGGAAGCCTGAGACTATGTGCTACTTGA  717

seq1  AATTTTTCTAAGCAGTGCCCATGAAACACACAGTGTGTAATCAGGCCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTAAGCAGTGCCCATGAAACACACAGTGTGTAATCAGGCCACA  767

seq1  GAATATCCTTCAAAAAATACATTAGCATGTATGTGTCAGCGCCCTTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCTTCAAAAAATACATTAGCATGTATGTGTCAGCGCCCTTGCTT  817

seq1  TACCCATACCACCTCTGAGAGCCTCACGCTTCTGCAGTTTGAATATGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACCACCTCTGAGAGCCTCACGCTTCTGCAGTTTGAATATGTCC  867

seq1  CCAGAATTCATTGTGCAGAGAATTAATCCCCCAGTGCAGAAAGCGCTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCATTGTGCAGAGAATTAATCCCCCAGTGCAGAAAGCGCTGAG  917

seq1  CATTAGGCCTTTGAAGGGGAAGCATGGTCATGAGGGTTCAATCCTTATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCTTTGAAGGGGAAGCATGGTCATGAGGGTTCAATCCTTATGA  967

seq1  GTTATCACAGGAGGGGACTAGTTACCACACAACTGAGCTCCTAACGAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACAGGAGGGGACTAGTTACCACACAACTGAGCTCCTAACGAAGA  1017

seq1  ATAGCCACTCTCCCTCTTCCATGTCCTCTCCTCCTTCTTTCTTCCCCCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACTCTCCCTCTTCCATGTCCTCTCCTCCTTCTTTCTTCCCCCCT  1067

seq1  TGCCCTCAACTTTTCCATCCCCTGTCCCTTTCATCCTCTCTCATGAATGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAACTTTTCCATCCCCTGTCCCTTTCATCCTCTCTCATGAATGC  1117

seq1  TCTTCTGTTCTTCTGCCTTCTCCACAGAACAACACAAGAGAGGTCCTTCC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTCTTCTGCCTTCTCCACAGAACAACACAAGAGAGGTCCTTCC  1167

seq1  CAGACTCGGCCCTCACTGACTTTGGATTTCCTAGAATTC  1237
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGGCCCTCACTGACTTTGGATTTCCTAGAATTC  1206

seq1: chr3_137140736_137141963
seq2: B6Ng01-086M08.g_69_1266

seq1  GAATTCCAGGCCACCCTGAGCTACAGTGTAAGACCCTGTATCAAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCACCCTGAGCTACAGTGTAAGACCCTGTATCAAAAACCA  50

seq1  AACCCACCAAAGCCTAAAACCAGCAAGGGAAGGCTGTGACATTCGTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCAAAGCCTAAAACCAGCAAGGGAAGGCTGTGACATTCGTCTTC  100

seq1  CCTCACCATGGTGGTTGTGGGCTGGTGTGTTCACAGCAGCAGTTTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCATGGTGGTTGTGGGCTGGTGTGTTCACAGCAGCAGTTTGAATG  150

seq1  GAGCTGTGTTATTTGCAAAGTTATCTGTAGGCTGTAGGAATTTCCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTTATTTGCAAAGTTATCTGTAGGCTGTAGGAATTTCCTCTGG  200

seq1  GTGTTTTTTTAGTAAGCCATGCAGAATATTTTCCTGACCTCCTTTCGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTTAGTAAGCCATGCAGAATATTTTCCTGACCTCCTTTCGTGC  250

seq1  ACAGGTGCTGTGTCCTGTGTGCTGCAGGAACTCTGGTGGAACTTGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCTGTGTCCTGTGTGCTGCAGGAACTCTGGTGGAACTTGGCAGT  300

seq1  CTTAGAAGCCTGCTACCCAACGCTTAAGAAAAATTCTTACATTTTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCCTGCTACCCAACGCTTAAGAAAAATTCTTACATTTTCTACT  350

seq1  TTGGTCAGTGTTGGGTCTAATATTTTTTCAGCCTACCTTCAGAATCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGTGTTGGGTCTAATATTTTTTCAGCCTACCTTCAGAATCCTCA  400

seq1  GATAATACAACATGTGAACAAGATAGATCTCTGTGACAAGAAATGTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACAACATGTGAACAAGATAGATCTCTGTGACAAGAAATGTTGGT  450

seq1  TAGGTTTAGTTGAAATTATTATTTAAGCAGTGGTAGCAATATATAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAGTTGAAATTATTATTTAAGCAGTGGTAGCAATATATAAGTTT  500

seq1  TAAAAACTTGTCCTAAAAACCTTGAAGCATTTCCTACATTATCCATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTGTCCTAAAAACCTTGAAGCATTTCCTACATTATCCATACTG  550

seq1  TCTGTTTATACATGTGTGTGTTAATGTTCATTAATCTATTTGATTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATACATGTGTGTGTTAATGTTCATTAATCTATTTGATTATATT  600

seq1  TTCATTGCACATAAGATAACACAACAGCAATAAAATCATTACCATAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCACATAAGATAACACAACAGCAATAAAATCATTACCATAGAGG  650

seq1  GTAGAGAGATGTCTCAGTGGTTAAGAGCATGTAGTACTCTTCCAGAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGATGTCTCAGTGGTTAAGAGCATGTAGTACTCTTCCAGAGGAC  700

seq1  CTTAGTTGAATTCTTTAACTATTGGTAATCCCAGCTCTAGCAAGTCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGAATTCTTTAACTATTGGTAATCCCAGCTCTAGCAAGTCTGAT  750

seq1  ACCCTATTTGGCCTCCATAGTATCTGTACTCCTATTTACAGTCCCATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATTTGGCCTCCATAGTATCTGTACTCCTATTTACAGTCCCATATT  800

seq1  CAGAAGCACACACATACACATAATTAAAAATAAATATTTTTAAAACATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCACACACATACACATAATTAAAAATAAATATTTTTAAAACATAA  850

seq1  TCACAAACAAAAATTGTGCCCTTAATAAATTTCAGGGCAAAAAGATCCTG  900
      |||||||| |||||||||||||||||||||||||||   |||||||||||
seq2  TCACAAAC-AAAATTGTGCCCTTAATAAATTTCAGG--CAAAAGATCCTG  897

seq1  GCTCTGATTGACTCAAGGAAGAAATCTTGTTACCATCTATACTTTGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTGACTCAAGGAAGAAATCTTGTTACCATCTATACTTTGCAGA  947

seq1  TAAATAGAAAATGTTGCTTATTCTATCTGTGGGCTTTATTGTTATTATTG  1000
      ||||||| ||||| |||||||||||||||||||||||| ||||||   ||
seq2  TAAATAG-AAATG-TGCTTATTCTATCTGTGGGCTTTA-TGTTAT--ATG  992

seq1  TTTTCAGATGCTAATAAAGGCTTTATGTCAAACAGGGACCCAGACCCCAA  1050
      |||||||||||||||||| ||||||||||||||||    ||||||||   
seq2  TTTTCAGATGCTAATAAA-GCTTTATGTCAAACAG---ACCAGACCC---  1035

seq1  CCAAACATTACTCATTAACCTTTCTAGTGGCTCTCTTGGAGCAGACAAGA  1100
       ||||||||||||| ||| ||||||||| |||||||  ||||  | ||||
seq2  ACAAACATTACTCA-TAATCTTTCTAGT-GCTCTCT--GAGCGAAAAAGA  1081

seq1  CCATTAATTGTTCATCAAATGAGAGGCAGAATCTGAATTGAAATCCTCAT  1150
       |||||| || ||||| ||||||||||   ||||| ||||||||||||||
seq2  ACATTAA-TGGTCATC-AATGAGAGGC--GATCTG-ATTGAAATCCTCAT  1126

seq1  CACTGTCTCCAGAACTC-TGGCTCCAAACCTCAGAGGTCACGATAAGCCC  1199
      |||||||||| |||||| ||||| |||  |||  |||| | ||| || ||
seq2  CACTGTCTCC-GAACTCTTGGCTTCAA--CTC--AGGTTA-GATTAGGCC  1170

seq1  CAGAAGGTA-CATCTTTGTGAATTATTGGC  1228
        ||||||| ||||||||||||| ||||||
seq2  --GAAGGTACCATCTTTGTGAATAATTGGC  1198