BAC Information

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BAC

Clone NameB6Ng01-086M13
Chromosome3 (Build37)
Map Location 48,329,800 - 48,447,688
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M13.bB6Ng01-086M13.g
ACCDH900089DH900090
length1,0771,133
definitionDH900089|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M13, 5' end.DH900090|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,329,800 - 48,330,891)(48,446,535 - 48,447,688)
sequence
gaattctgaacaactactagagagcagacattacgattatcatcatgtga
aagatttcatattataaggctatgtcctctcttgtccttaaacatgtaga
aaggtgaaaactaaaatgcacaacctgaatcacaggctaaaccactgaac
aaatactacatgtactacatgtaactacatggacatgattacatttcatt
ttaatggattactattaacatagtttcatgttcggtattgtaggctggta
tggaaatcattaagtacctcaggatatccttgaattcattaaaaaaaaaa
aaaccaaacaaacaaacctgtcattccttagcttcctaaatactggcatt
acagttgttatccacccaatccactttccatattttttctttaacctgaa
gaaatatacttgggcagtttttgttgttcttgctcaaatgaaaatatata
actttactttgttggctttcttaaaagaatgaggtaagtttatggtgtgt
gtgtgtgtacatgtgtgtgtgtgtgtgtgtctgtgtgtgtgcttcttttt
tttttcaacaaaaacaatcctaaatcattttgacagaatacctcaattct
tagtgtatatggattttatggtgctgtttctgtgtagtttctgaagatcc
agtactttccaaagtgtgtaaagtaatgataggaaggccttagttctgat
ctgggcactgtctgggaccagtccaactaactgcaggctcttcttttgga
ttcctggctctcaactttagagagcatctcccatgttggagtgggctttg
taatgcagttctctgagtcatttctgctacaggaagtaacctgccactca
tattcctgtgggaaaagacaatgaaactcattgcttcacttaagcagact
ctgaagttatcttttcttgatctgttaccagttccctgtcagagaaagag
accttcattactgtttatgaatatccacacccccggggctgtcatcaaga
atggtatcttctcctaacatttccctctcatgtcttatcctttctcactg
tcatactaacatgattgcatttaaggg
gaattcaatctgtgctgatggggtcaaaccttgattactctaattattag
ttgggcactcttgagcaatttgctcagctgctctaaggtcttgtttcctc
atctagaaaattgggataatcatagagttggctgatggggctgctgtaag
gatacattaagtgcatttctctgcagtgtcccttgtgcaggatgttattt
caattgccattgttagtgataacattatacccaactccagtgtaatagaa
gggaggtctacaatcatctcacacacataccaggtaagaaggagggtttg
ggtaacttaaggacattgggaattttctctttagaagaacaaaccagggt
agaataaaaaaatgaacatttatttttaacttagaggaagtatgattaaa
gggaactatgtcataaattagaatcttctcaaaggagactccaggggaat
gtaaagcctcaacctgtagaaaaaaaaattctctttagaatgggatactg
agtgattggtctaagctgctgcaaacaatcctgaaataatttggagaaaa
tatttgtttacttgaaagagattattagctaggatatccatattcaggta
taaaattgaaaatgaacatattattttcaaatttttatttgagtaaataa
aatatttactggaaaagggtactaccttccctgaatcccagtttttcttt
tcattgtattagacaaatagacaaagattattcaaaaccattgtgaatgg
ctaattttagaatctgatgaatgctttacataaataaattatttaagtaa
atgatgcattaaaattggaagaacccaaattctgaacgtcccaatcaacc
tcttgccctctagatacctgtgaatgtccaagattctcagtacagctcag
caattcctggtcctttccttcttccactttggattcctgggctgcataat
gttgaaacttctgccttttctagagtactgtttgtgagccacattttcat
acatatctccatacgtctgtagactgcactacctttgacttggatgcata
tttctattctatctcctcatcgcattgctttgattatctgagtacaagta
gtctaatttttccgagtttccaagtcagccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48329800_48330891
seq2: B6Ng01-086M13.b_45_1121

seq1  GAATTCTGAACAACTACTAGAGAGCAGACATTACGATTATCATCATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACAACTACTAGAGAGCAGACATTACGATTATCATCATGTGA  50

seq1  AAGATTTCATATTATAAGGCTATGTCCTCTCTTGTCCTTAAACATGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCATATTATAAGGCTATGTCCTCTCTTGTCCTTAAACATGTAGA  100

seq1  AAGGTGAAAACTAAAATGCACAACCTGAATCACAGGCTAAACCACTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAAACTAAAATGCACAACCTGAATCACAGGCTAAACCACTGAAC  150

seq1  AAATACTACATGTACTACATGTAACTACATGGACATGATTACATTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTACATGTACTACATGTAACTACATGGACATGATTACATTTCATT  200

seq1  TTAATGGATTACTATTAACATAGTTTCATGTTCGGTATTGTAGGCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGATTACTATTAACATAGTTTCATGTTCGGTATTGTAGGCTGGTA  250

seq1  TGGAAATCATTAAGTACCTCAGGATATCCTTGAATTCATTAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCATTAAGTACCTCAGGATATCCTTGAATTCATTAAAAAAAAAA  300

seq1  AAACCAAACAAACAAACCTGTCATTCCTTAGCTTCCTAAATACTGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACAAACAAACCTGTCATTCCTTAGCTTCCTAAATACTGGCATT  350

seq1  ACAGTTGTTATCCACCCAATCCACTTTCCATATTTTTTCTTTAACCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTTATCCACCCAATCCACTTTCCATATTTTTTCTTTAACCTGAA  400

seq1  GAAATATACTTGGGCAGTTTTTGTTGTTCTTGCTCAAATGAAAATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATACTTGGGCAGTTTTTGTTGTTCTTGCTCAAATGAAAATATATA  450

seq1  ACTTTACTTTGTTGGCTTTCTTAAAAGAATGAGGTAAGTTTATGGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTTGTTGGCTTTCTTAAAAGAATGAGGTAAGTTTATGGTGTGT  500

seq1  GTGTGTGTACATGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCTTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTACATGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCTTCTTTTT  550

seq1  TTTTTCAACAAAAACAATCCTAAATCATTTTGACAGAATACCTCAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACAAAAACAATCCTAAATCATTTTGACAGAATACCTCAATTCT  600

seq1  TAGTGTATATGGATTTTATGGTGCTGTTTCTGTGTAGTTTCTGAAGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATATGGATTTTATGGTGCTGTTTCTGTGTAGTTTCTGAAGATCC  650

seq1  AGTACTTTCCAAAGTGTGTAAAGTAATGATAGGAAGGCCTTAGTTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTCCAAAGTGTGTAAAGTAATGATAGGAAGGCCTTAGTTCTGAT  700

seq1  CTGGGCACTGTCTGGGACCAGTCCAACTAACTGCAGGCTCTTC-TTTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGGCACTGTCTGGGACCAGTCCAACTAACTGCAGGCTCTTCTTTTGGA  750

seq1  TTCCTGGCTCTCAACTTTAGAGAGCATCTCCCATGTTGGAGTGGGCTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCTCTCAACTTTAGAGAGCATCTCCCATGTTGGAGTGGGCTTTG  800

seq1  TAATGCAGTTCTCTGAGTCATTTCTGCTACAGGAAGTAACCTGCCACTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGTTCTCTGAGTCATTTCTGCTACAGGAAGTAACCTGCCACTCA  850

seq1  TATTCCTGTGGGAAAAGACAATGAAACTCATTGCTTCACTTAAGCAGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGTGGGAAAAGACAATGAAACTCATTGCTTCACTTAAGCAGACT  900

seq1  CTGAAGTTATCTTTTCTTGATCTGTTACCAGTTCCCTGTCTAGAGTAAAG  949
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  CTGAAGTTATCTTTTCTTGATCTGTTACCAGTTCCCTGTC-AGAG-AAAG  948

seq1  TAGACCTTCATAACTGTTTATGAATATCACACACCACCTGGGGCTGTCCA  999
       |||||||||| |||||||||||||||| |||||| || |||||||| ||
seq2  -AGACCTTCATTACTGTTTATGAATATC-CACACC-CCCGGGGCTGT-CA  994

seq1  TCCAGGATTGTTTTCTTCTCTCACCTTTTCCCTCTCATTGTCCTTTATCT  1049
      | || || || | |||||||  | | ||||||||||| ||||  |||  |
seq2  T-CAAGAATGGTATCTTCTCCTAACATTTCCCTCTCA-TGTC--TTA--T  1038

seq1  CTTTTCTCACTTTCATATCTAAACATGAGTGCATTTTAAAGGG  1092
      | ||||||||| ||||| || ||||||| |||||||  |||||
seq2  CCTTTCTCACTGTCATA-CT-AACATGATTGCATTT--AAGGG  1077

seq1: chr3_48446535_48447688
seq2: B6Ng01-086M13.g_68_1200 (reverse)

seq1  AAAGGCTGACTGTGGAAAAAACTCTGAGAAAAATATGACTACCTGTAACT  50
      ||||||||||| ||||||     ||  |||||||  |||||| ||| |||
seq2  AAAGGCTGACT-TGGAAA-----CTCGGAAAAATTAGACTACTTGT-ACT  43

seq1  CAAGGATTAATACCAAAGCAAATGCGATGAGGAGATAG-ATAGAAATATG  99
      ||  || ||||  |||||| |||||||||||||||||| |||||||||||
seq2  CA--GA-TAAT--CAAAGC-AATGCGATGAGGAGATAGAATAGAAATATG  87

seq1  CATACAAAGTCAAAGGGTTAGTGCAAGGTTCTACAGACCTTATGGAGATA  149
      ||| | ||||||||||  |||||||    |||||||| | ||||||||||
seq2  CAT-CCAAGTCAAAGG--TAGTGCA---GTCTACAGA-CGTATGGAGATA  130

seq1  TTGTATGAAAAATGTGGCTCACAAACAGTACTCTAGAAAAGGCAGAAGTT  199
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTATG-AAAATGTGGCTCACAAACAGTACTCTAGAAAAGGCAGAAGTT  178

seq1  TCAACATTATGCAGCCCAGGAATCCAAAGTGGAAGAAGGAAAGGACCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTATGCAGCCCAGGAATCCAAAGTGGAAGAAGGAAAGGACCAGG  228

seq1  AATTGCTGAGCTGTACTGAGAATCTTGGACATTCACAGGTATCTAGAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAGCTGTACTGAGAATCTTGGACATTCACAGGTATCTAGAGGG  278

seq1  CAAGAGGTTGATTGGGACGTTCAGAATTTGGGTTCTTCCAATTTTAATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGTTGATTGGGACGTTCAGAATTTGGGTTCTTCCAATTTTAATGC  328

seq1  ATCATTTACTTAAATAATTTATTTATGTAAAGCATTCATCAGATTCTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTACTTAAATAATTTATTTATGTAAAGCATTCATCAGATTCTAAA  378

seq1  ATTAGCCATTCACAATGGTTTTGAATAATCTTTGTCTATTTGTCTAATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCATTCACAATGGTTTTGAATAATCTTTGTCTATTTGTCTAATAC  428

seq1  AATGAAAAGAAAAACTGGGATTCAGGGAAGGTAGTACCCTTTTCCAGTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGAAAAACTGGGATTCAGGGAAGGTAGTACCCTTTTCCAGTAA  478

seq1  ATATTTTATTTACTCAAATAAAAATTTGAAAATAATATGTTCATTTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTACTCAAATAAAAATTTGAAAATAATATGTTCATTTTCAA  528

seq1  TTTTATACCTGAATATGGATATCCTAGCTAATAATCTCTTTCAAGTAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACCTGAATATGGATATCCTAGCTAATAATCTCTTTCAAGTAAAC  578

seq1  AAATATTTTCTCCAAATTATTTCAGGATTGTTTGCAGCAGCTTAGACCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCTCCAAATTATTTCAGGATTGTTTGCAGCAGCTTAGACCAA  628

seq1  TCACTCAGTATCCCATTCTAAAGAGAATTTTTTTTTCTACAGGTTGAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTATCCCATTCTAAAGAGAATTTTTTTTTCTACAGGTTGAGGC  678

seq1  TTTACATTCCCCTGGAGTCTCCTTTGAGAAGATTCTAATTTATGACATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCCCCTGGAGTCTCCTTTGAGAAGATTCTAATTTATGACATAG  728

seq1  TTCCCTTTAATCATACTTCCTCTAAGTTAAAAATAAATGTTCATTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAATCATACTTCCTCTAAGTTAAAAATAAATGTTCATTTTTTT  778

seq1  ATTCTACCCTGGTTTGTTCTTCTAAAGAGAAAATTCCCAATGTCCTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCCTGGTTTGTTCTTCTAAAGAGAAAATTCCCAATGTCCTTAAG  828

seq1  TTACCCAAACCCTCCTTCTTACCTGGTATGTGTGTGAGATGATTGTAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAAACCCTCCTTCTTACCTGGTATGTGTGTGAGATGATTGTAGAC  878

seq1  CTCCCTTCTATTACACTGGAGTTGGGTATAATGTTATCACTAACAATGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTATTACACTGGAGTTGGGTATAATGTTATCACTAACAATGGC  928

seq1  AATTGAAATAACATCCTGCACAAGGGACACTGCAGAGAAATGCACTTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATAACATCCTGCACAAGGGACACTGCAGAGAAATGCACTTAAT  978

seq1  GTATCCTTACAGCAGCCCCATCAGCCAACTCTATGATTATCCCAATTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTACAGCAGCCCCATCAGCCAACTCTATGATTATCCCAATTTTC  1028

seq1  TAGATGAGGAAACAAGACCTTAGAGCAGCTGAGCAAATTGCTCAAGAGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGGAAACAAGACCTTAGAGCAGCTGAGCAAATTGCTCAAGAGTG  1078

seq1  CCCAACTAATAATTAGAGTAATCAAGGTTTGACCCCATCAGCACAGATTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTAATAATTAGAGTAATCAAGGTTTGACCCCATCAGCACAGATTG  1128

seq1  AATTC  1154
      |||||
seq2  AATTC  1133