BAC Information

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BAC

Clone NameB6Ng01-086N01
Chromosome3 (Build37)
Map Location 29,436,863 - 29,550,347
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086N01.bB6Ng01-086N01.g
ACCDH900112DH900113
length3251,131
definitionDH900112|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N01, 5' end.DH900113|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,436,863 - 29,437,187)(29,549,209 - 29,550,347)
sequence
aaattgaaaagagcaaagaaccacaggaaggctttcttttcaaattttaa
tagtatttaatagggattttgtaggagataatagcactgtatttgcttta
tgtagtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgt
ctatttctctgtgtgtctctgtgtggtatcaaacatgtgaggcttagata
taagcttcattgaatatttcaatggatatttcaagctgactttaagtcaa
tttagtattttatagagtactatttacagggcataactgatgtttgcaga
caagatgaatctggagtgtgtgtgt
gaattcagtgatgagcatgtgaaatcgcagggaccatttgaagaggtgtg
acgaacgccaaggacaaaagaagccactactgaagacacaccttggagca
tcccagtgtgtgggatgcaatcacagactgcagctgctctttcctctcat
gttttctttgcccatgctggttcctcttctttgagcattaccgtggaacc
tctagtgtttaacagaggtggtacaagaagataggacttcacaaagcatc
tgagccatgagtcaaggagtttgaaatcagaagacctgagatttaatccc
cactgactatcctgtggaccacaaggcaaactaatttttatttgtctgct
ttctcagcagtagaacgaagcaggttacactgctccatccccattgttgc
tctgtcccaccaggcaacatgctttggaacttctgcttagccaagaattt
tcagcctcattctttcagttattgctcttgctctatatttgtagaccatc
actgactccgaagactgccattgttgctacttactgtaacaatgttttct
gtcagctcctagctcaaagccagggtggcaggtacatgtgaaggacccct
ttgagttcacacagtgatgagcacagggagcgagttcttcagcacactca
tttatatctacagagagagagagagacatacgcagtagctggcttagcaa
ctcccattctgtttgtaaactataaaaatgagtatcctccacttagcctc
taattttaaaaataccacagtctacatacactcagtgaggcagaggtatt
tgtgactaagccagctttatgaatgtgctggccagatgctcattcatatc
acttcttatctatttgaaacaatgttattaatttaaaaaagattgaatgt
aactataaataatagttctaatctattcctcaatagtcaaatggaagcca
ttgtagtttgatgctattatatgtcatattcttgacagatatctcaagtc
catggtattttgttgcttttggagataatacattaattataacattggat
cccctccttcaaagctcatatattctcttcctcattcttcttcgattaat
gcaatcattcttcatcaattgttattgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29436863_29437187
seq2: B6Ng01-086N01.b_49_373

seq1  AAATTGAAAAGAGCAAAGAACCACAGGAAGGCTTTCTTTTCAAATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAAGAGCAAAGAACCACAGGAAGGCTTTCTTTTCAAATTTTAA  50

seq1  TAGTATTTAATAGGGATTTTGTAGGAGATAATAGCACTGTATTTGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAATAGGGATTTTGTAGGAGATAATAGCACTGTATTTGCTTTA  100

seq1  TGTAGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTGTGT  150

seq1  CTATTTCTCTGTGTGTCTCTGTGTGGTATCAAACATGTGAGGCTTAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCTGTGTGTCTCTGTGTGGTATCAAACATGTGAGGCTTAGATA  200

seq1  TAAGCTTCATTGAATATTTCAATGGATATTTCAAGCTGACTTTAAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCATTGAATATTTCAATGGATATTTCAAGCTGACTTTAAGTCAA  250

seq1  TTTAGTATTTTATAGAGTACTATTTACAGGGCATAACTGATGTTTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTTTATAGAGTACTATTTACAGGGCATAACTGATGTTTGCAGA  300

seq1  CAAGATGAATCTGGAGTGTGTGTGT  325
      |||||||||||||||||||||||||
seq2  CAAGATGAATCTGGAGTGTGTGTGT  325

seq1: chr3_29549209_29550347
seq2: B6Ng01-086N01.g_68_1198 (reverse)

seq1  CATGCAATAACAATTGATGAAGAATTGATGGCCATAAATTCGAAGAAGAA  50
      |||||||||||||||||||||||| |||| ||  |||  |||||||||||
seq2  CATGCAATAACAATTGATGAAGAA-TGATTGCATTAA--TCGAAGAAGAA  47

seq1  TGA-GAAGAG-ATATATGGAGGCTTTGAAGGGAGGGGATCAAATGTTATA  98
      ||| |||||| |||||||   |||||||| |||||||||| |||||||||
seq2  TGAGGAAGAGAATATATG--AGCTTTGAA-GGAGGGGATCCAATGTTATA  94

seq1  ATTAATGTATTATCT-CAAAAGCAAACAAAAATACCATGGACTTGAGATA  147
      ||||||||||||||| |||||||||   ||||||||||||||||||||||
seq2  ATTAATGTATTATCTCCAAAAGCAA--CAAAATACCATGGACTTGAGATA  142

seq1  TCTGTTCAAGAATATGACATATTAATAGCATCAAACTACAATGGCTTCCA  197
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTG-TCAAGAATATGACATA-TAATAGCATCAAACTACAATGGCTTCCA  190

seq1  TTTGACCTATTGAGGAATAGATTAGAACTATTATTTATAGTTACATTCAA  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGA-CTATTGAGGAATAGATTAGAACTATTATTTATAGTTACATTCAA  239

seq1  TCTTTTTTAAATTAATAACATTGTTTCAAATAGATAAGAAGTGATATGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAATTAATAACATTGTTTCAAATAGATAAGAAGTGATATGAA  289

seq1  TGAGCATCTGGCCAGCACATTCATAAAGCTGGCTTAGTCACAAATACCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCTGGCCAGCACATTCATAAAGCTGGCTTAGTCACAAATACCTC  339

seq1  TGCCTCACTGAGTGTATGTAGACTGTGGTATTTTTAAAATTAGAGGCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACTGAGTGTATGTAGACTGTGGTATTTTTAAAATTAGAGGCTAA  389

seq1  GTGGAGGATACTCATTTTTATAGTTTACAAACAGAATGGGAGTTGCTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGATACTCATTTTTATAGTTTACAAACAGAATGGGAGTTGCTAAG  439

seq1  CCAGCTACTGCGTATGTCTCTCTCTCTCTCTGTAGATATAAATGAGTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTGCGTATGTCTCTCTCTCTCTCTGTAGATATAAATGAGTGTG  489

seq1  CTGAAGAACTCGCTCCCTGTGCTCATCACTGTGTGAACTCAAAGGGGTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACTCGCTCCCTGTGCTCATCACTGTGTGAACTCAAAGGGGTCC  539

seq1  TTCACATGTACCTGCCACCCTGGCTTTGAGCTAGGAGCTGACAGAAAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTACCTGCCACCCTGGCTTTGAGCTAGGAGCTGACAGAAAACA  589

seq1  TTGTTACAGTAAGTAGCAACAATGGCAGTCTTCGGAGTCAGTGATGGTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAGTAAGTAGCAACAATGGCAGTCTTCGGAGTCAGTGATGGTCT  639

seq1  ACAAATATAGAGCAAGAGCAATAACTGAAAGAATGAGGCTGAAAATTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATAGAGCAAGAGCAATAACTGAAAGAATGAGGCTGAAAATTCTT  689

seq1  GGCTAAGCAGAAGTTCCAAAGCATGTTGCCTGGTGGGACAGAGCAACAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGCAGAAGTTCCAAAGCATGTTGCCTGGTGGGACAGAGCAACAAT  739

seq1  GGGGATGGAGCAGTGTAACCTGCTTCGTTCTACTGCTGAGAAAGCAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGAGCAGTGTAACCTGCTTCGTTCTACTGCTGAGAAAGCAGACA  789

seq1  AATAAAAATTAGTTTGCCTTGTGGTCCACAGGATAGTCAGTGGGGATTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTAGTTTGCCTTGTGGTCCACAGGATAGTCAGTGGGGATTAA  839

seq1  ATCTCAGGTCTTCTGATTTCAAACTCCTTGACTCATGGCTCAGATGCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTCTTCTGATTTCAAACTCCTTGACTCATGGCTCAGATGCTTT  889

seq1  GTGAAGTCCTATCTTCTTGTACCACCTCTGTTAAACACTAGAGGTTCCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCCTATCTTCTTGTACCACCTCTGTTAAACACTAGAGGTTCCAC  939

seq1  GGTAATGCTCAAAGAAGAGGAACCAGCATGGGCAAAGAAAACATGAGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCTCAAAGAAGAGGAACCAGCATGGGCAAAGAAAACATGAGAGG  989

seq1  AAAGAGCAGCTGCAGTCTGTGATTGCATCCCACACACTGGGATGCTCCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGCTGCAGTCTGTGATTGCATCCCACACACTGGGATGCTCCAA  1039

seq1  GGTGTGTCTTCAGTAGTGGCTTCTTTTGTCCTTGGCGTTCGTCACACCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTTCAGTAGTGGCTTCTTTTGTCCTTGGCGTTCGTCACACCTC  1089

seq1  TTCAAATGGTCCCTGCGATTTCACATGCTCATCACTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGTCCCTGCGATTTCACATGCTCATCACTGAATTC  1131