BAC Information

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BAC

Clone NameB6Ng01-087C08
Chromosome3 (Build37)
Map Location 51,818,156 - 51,956,409
singlet/doubletdoublet
Overlap geneLOC433587
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C08.bB6Ng01-087C08.g
ACCDH900355DH900356
length1,2091,082
definitionDH900355|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C08, 5' end.DH900356|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,818,156 - 51,819,323)(51,955,321 - 51,956,409)
sequence
gaattcagtttacaagaattttgttgaactatattcatcagataaattgg
tgtgtagttgcccctttttatgatagcaaaggaatggaaccaatctagat
gctcatctacaaatgactggacaataacaatgaggtgatgccagaccaac
gactcactgcaatgaacatttgcaagtgaaggtgtgtggacaaaggttgt
gctttgggatacacggggacacaccacagctcccataatgatacctatgg
tttgtttgtttgtttttcatttgttatttttcctttgggggggggttaca
agagcagagagggcagctacaaagggaggggaaaatgactgggattggag
tgcatgatgtgaaactcacaaagaaccaatcaaaaggtttttaatatggt
aatgtaaaaacagaatattactcaaggtaaagaaaaacaaaatcacagac
tttatagcaaagaggatggacttggaacatataatactgaggtaggtgaa
ccaaactcagaaagaaaatgatgcacttttcctcatcaatggatcccagc
ctataatgtatacaaatatataggtaaacatatacaaatagggccaaaat
atgacatttaggaaggagaacaagaggaagtgacatcagtggcaaggaag
agtggatgaaggcaaaggactcacgagtcacgagagaggatgctgaacta
agtattcactctagttttgactccatcctagtttttttgcttggctttgt
ttgggtggctaagtgaattttgataagcaggcagttgtggtgcatggctt
taatcccagcactcagatgtaggcagatctctgagttcgaggccagcctc
gaggtccacagagtgagttccagggcagcccgggctgcatagtgagagct
tgtcttgagaaacaatagcaacagagtgaacagtgtaagtgtgaaaccct
gagcgatgctcaatggcttcagatggtcattatacctgtgcagaagacca
gtgagacgtgtgggctgtgaggctagaccattgtctgagtgatggcttct
taactagccttcgctgttctgctgtgagtaattagaataaagtatttcac
ttaaatttttttcttattacttctctccgagttcttacctatgacgagag
gaaagcttgttgttgtgtcatctgtccaggtagtgtcattaaatctgtaa
tcctaatga
gaattctccccagacaccaagtctattgcttcctccctctagactcccca
gcatctagaagagtgggaaacaaatttttactatttaacaagtcaccagg
gctacacagagaaaccctgtctcgaaaaaaaccaaaaaccaaaaaaaaaa
aaaaaaaaagaaaaaaaaagtgtttcccttacagtggttcgcaaactcag
agtccagtcttctgccatgtccgatggtgtctaatttgatccttagaaat
acaggcacaagagcagttttggtgtgtgggtgatggttctatcagccctc
cttctctgggctgactttgacatttctggagttttgctcatgttagatca
ttatttcctcgtctttgtgtgtctgccaagttttgattgggtggtagata
ctgtgattattcttaagttttattctaggaaatagttaaattatgtgaaa
atagtttggctcttttccttgtttcctctgtttttctttgtttttttttt
ctgtttatttagtatatatatatatacatatacatactcacatacaaaca
cacacatatatattatatgtacctgtatttcttatgatcgagttaaacac
aattggacattgcagaagactggactctgagtctgtcaagaccactgtaa
tatatattatatgtaatatataatatatattatatatggtcttgacatat
atatatatctgtaattagatagatagatagatagatagatagatagatag
atagatagatagataggtaatttaaatagtgtctctatatatacctgagc
tatcctggaactcactatgtagaccagctggcttcgaactcacagagatc
tattggctctgcctcttacttaccgagattaaagttgtgcacctccacac
tggctagtttcacactttttcattttcagatcacttaaaaacatcagtgg
agtctctgtggcttagttcctcccctgggaagctgcactctgtctgctca
ctgcttatgtattagaaaggaattccacttcttgcctgctcataacagaa
actgtccctgacttcatagtcacacaatcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51818156_51819323
seq2: B6Ng01-087C08.b_114_1254

seq1  TATGATAGCAAAGGAATGGAACCAATCTAGATGCTCATCTACAAATGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGCAAAGGAATGGAACCAATCTAGATGCTCATCTACAAATGACT  50

seq1  GGACAATAACAATGAGGTGATGCCAGACCAACGACTCACTGCAATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAACAATGAGGTGATGCCAGACCAACGACTCACTGCAATGAACA  100

seq1  TTTGCAAGTGAAGGTGTGTGGACAAAGGTTGTGCTTTGGGATACACGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTGAAGGTGTGTGGACAAAGGTTGTGCTTTGGGATACACGGGG  150

seq1  ACACACCACAGCTCCCATAATGATACCTATGGTTTGTTTGTTTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACAGCTCCCATAATGATACCTATGGTTTGTTTGTTTGTTTTTC  200

seq1  ATTTGTTATTTTTCCTTTGGGGGGGGGTTACAAGAGCAGAGAGGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATTTTTCCTTTGGGGGGGGGTTACAAGAGCAGAGAGGGCAGCT  250

seq1  ACAAAGGGAGGGGAAAATGACTGGGATTGGAGTGCATGATGTGAAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAGGGGAAAATGACTGGGATTGGAGTGCATGATGTGAAACTCA  300

seq1  CAAAGAACCAATCAAAAGGTTTTTAATATGGTAATGTAAAAACAGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACCAATCAAAAGGTTTTTAATATGGTAATGTAAAAACAGAATAT  350

seq1  TACTCAAGGTAAAGAAAAACAAAATCACAGACTTTATAGCAAAGAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGGTAAAGAAAAACAAAATCACAGACTTTATAGCAAAGAGGATG  400

seq1  GACTTGGAACATATAATACTGAGGTAGGTGAACCAAACTCAGAAAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGAACATATAATACTGAGGTAGGTGAACCAAACTCAGAAAGAAAA  450

seq1  TGATGCACTTTTCCTCATCAATGGATCCCAGCCTATAATGTATACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACTTTTCCTCATCAATGGATCCCAGCCTATAATGTATACAAATA  500

seq1  TATAGGTAAACATATACAAATAGGGCCAAAATATGACATTTAGGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTAAACATATACAAATAGGGCCAAAATATGACATTTAGGAAGGAG  550

seq1  AACAAGAGGAAGTGACATCAGTGGCAAGGAAGAGTGGATGAAGGCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGGAAGTGACATCAGTGGCAAGGAAGAGTGGATGAAGGCAAAGG  600

seq1  ACTCACGAGTCACGAGAGAGGATGCTGAACTAAGTATTCACTCTAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGAGTCACGAGAGAGGATGCTGAACTAAGTATTCACTCTAGTTTT  650

seq1  GACTCCATCCTAGTTTTTTTGCTTGGCTTTGTTTGGGTGGCTAAGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATCCTAGTTTTTTTGCTTGGCTTTGTTTGGGTGGCTAAGTGAAT  700

seq1  TTTGATAAGCAGGCAGTTGTGGTGCATGGCTTTAATCCCAGCACTCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAGCAGGCAGTTGTGGTGCATGGCTTTAATCCCAGCACTCAGAT  750

seq1  GTAGGCAGATCTCTGAGTTCGAGGCCAGCCTCGAGGTCCACAGAGTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGATCTCTGAGTTCGAGGCCAGCCTCGAGGTCCACAGAGTGAGT  800

seq1  TCCAGGGCAGCCGGGGCTGCATAGTGAGAGCTTGTCTTGAGAAACAATAG  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCAGCCCGGGCTGCATAGTGAGAGCTTGTCTTGAGAAACAATAG  850

seq1  CAACAGAGGTGAACAGTGTAAGTGTGAAACCCTGAGCGATGCTCAATGGC  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGA-GTGAACAGTGTAAGTGTGAAACCCTGAGCGATGCTCAATGGC  899

seq1  TTCAGAATGGTCATTATACCTGTGCAGAAGACCAGTGAGACGTGTGGGCT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAG-ATGGTCATTATACCTGTGCAGAAGACCAGTGAGACGTGTGGGCT  948

seq1  GTGAGGCTAGACCATTGTCTGAGTGAATGGCTTCCTTAAACTAGCCTTCG  1000
      ||||||||||||||||||||||||| ||||||||  | ||||||||||||
seq2  GTGAGGCTAGACCATTGTCTGAGTG-ATGGCTTC--TTAACTAGCCTTCG  995

seq1  CTGTTCTTGCTTGTGAGTTAATTAGAATAGAGTAATTTCACTTAAATTTT  1050
      |||||| ||| |||||| ||||||||||| ||| |||||||||||| |||
seq2  CTGTTC-TGC-TGTGAG-TAATTAGAATAAAGT-ATTTCACTTAAA-TTT  1040

seq1  TTTTCTTATTTACTTTCTTCTCCGAGGTTTTCTTACCTATGACAGTAGGA  1100
      |||||||| ||||||   ||||||||   ||||||||||||||     ||
seq2  TTTTCTTA-TTACTT--CTCTCCGAG---TTCTTACCTATGAC---GAGA  1081

seq1  GGAGAGCTTTGGTTGTGTGGTGTCATCTGTCACTAGTGTAGTGTCTATTT  1150
      ||| |||||  ||  ||| |||||||||||  | || |||||||| ||| 
seq2  GGAAAGCTT--GT--TGTTGTGTCATCTGT--CCAG-GTAGTGTC-ATTA  1123

seq1  AATCCTGT-ATCCTAATGA  1168
      ||| |||| ||||||||||
seq2  AAT-CTGTAATCCTAATGA  1141

seq1: chr3_51955321_51956409
seq2: B6Ng01-087C08.g_69_1150 (reverse)

seq1  CACGATTTGTGTGGACCTATGAAGTCTGGGGACAGTTTCTGTTCTGAGCA  50
      ||||| |||||||   ||||||||||  ||||||||||||||| ||||||
seq2  CACGA-TTGTGTG--ACTATGAAGTC-AGGGACAGTTTCTGTTATGAGCA  46

seq1  GGCAAGAGTGGGAATTCCTTTCTAATACACTAAGCAGTGAGCAGACAGAG  100
      |||||||   ||||||||||||||||||| ||||||||||||||||||||
seq2  GGCAAGAAGTGGAATTCCTTTCTAATACA-TAAGCAGTGAGCAGACAGAG  95

seq1  TGCAGCTTCCACAGGGGAGGGAACTAAGCCACAGAGACTCCACTGATGTT  150
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TGCAGCTTCC-CAGGGGA-GGAACTAAGCCACAGAGACTCCACTGATGTT  143

seq1  TTTAAGTGATCTGAAAATGCAAAAGTGTGAAACTAGCCAGGTGTGGAGGT  200
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TTTAAGTGATCTGAAAATGAAAAAGTGTGAAACTAGCCA-GTGTGGAGGT  192

seq1  GCACAACTTTAATCTCGGTAAGTAAGAGGCAGAGCCAGTAGATCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCACAACTTTAATCTCGGTAAGTAAGAGGCAGAGCCAATAGATCTCTGTG  242

seq1  AGTTCGAGGCCAGCTGGTCTACATAGTGAGTTCCAGGATAGCTCAGGTAT  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAAGCCAGCTGGTCTACATAGTGAGTTCCAGGATAGCTCAGGTAT  292

seq1  ATATAGAGACACTATTT-AATTACCTATCTATCTATCTATCTATCTATCT  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATAGAGACACTATTTAAATTACCTATCTATCTATCTATCTATCTATCT  342

seq1  ATCTATCTATCTATCTATCTATCTAATTACAGATATATATATATGTCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTAATTACAGATATATATATATGTCAAG  392

seq1  ACCATATATAATATATATTATATATTACATATAATATATATTACAGTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATATAATATATATTATATATTACATATAATATATATTACAGTGGT  442

seq1  CTTGACAGACTCAGAGTCCAGTCTTCTGCAATGTCCAATTGTGTTTAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGACTCAGAGTCCAGTCTTCTGCAATGTCCAATTGTGTTTAACT  492

seq1  CGATCATAAGAAATACAGGTACATATAATATATATGTGTGTGTTTGTATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATAAGAAATACAGGTACATATAATATATATGTGTGTGTTTGTATG  542

seq1  TGAGTATGTATATGTATATATATATATACTAAATAAACAGAAAAAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGTATATGTATATATATATATACTAAATAAACAGAAAAAAAAAA  592

seq1  CAAAGAAAAACAGAGGAAACAAGGAAAAGAGCCAAACTATTTTCACATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAACAGAGGAAACAAGGAAAAGAGCCAAACTATTTTCACATAA  642

seq1  TTTAACTATTTCCTAGAATAAAACTTAAGAATAATCACAGTATCTACCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTATTTCCTAGAATAAAACTTAAGAATAATCACAGTATCTACCAC  692

seq1  CCAATCAAAACTTGGCAGACACACAAAGACGAGGAAATAATGATCTAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAAACTTGGCAGACACACAAAGACGAGGAAATAATGATCTAACA  742

seq1  TGAGCAAAACTCCAGAAATGTCAAAGTCAGCCCAGAGAAGGAGGGCTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAACTCCAGAAATGTCAAAGTCAGCCCAGAGAAGGAGGGCTGAT  792

seq1  AGAACCATCACCCACACACCAAAACTGCTCTTGTGCCTGTATTTCTAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATCACCCACACACCAAAACTGCTCTTGTGCCTGTATTTCTAAGG  842

seq1  ATCAAATTAGACACCATCGGACATGGCAGAAGACTGGACTCTGAGTTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTAGACACCATCGGACATGGCAGAAGACTGGACTCTGAGTTTGC  892

seq1  GAACCACTGTAAGGGAAACACTTTTTTTTTCTTTTTTTTTTTTTTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTGTAAGGGAAACACTTTTTTTTTCTTTTTTTTTTTTTTTTTTT  942

seq1  GGTTTTTGGTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGTGACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGGTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGTGACT  992

seq1  TGTTAAATAGTAAAAATTTGTTTCCCACTCTTCTAGATGCTGGGGAGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATAGTAAAAATTTGTTTCCCACTCTTCTAGATGCTGGGGAGTCT  1042

seq1  AGAGGGAGGAAGCAATAGACTTGGTGTCTGGGGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGAAGCAATAGACTTGGTGTCTGGGGAGAATTC  1082