BAC Information

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BAC

Clone NameB6Ng01-087E08
Chromosome3 (Build37)
Map Location 29,137,944 - 29,279,700
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087E08.bB6Ng01-087E08.g
ACCDH900445DH900446
length1,1451,005
definitionDH900445|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E08, 5' end.DH900446|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,278,534 - 29,279,700)(29,137,944 - 29,138,953)
sequence
gaattcaaagaagacatatttctattttgtttcaatggctgtccaggagc
cttgtcctctctttttttctttttcctttttttgtattcactcccatctc
aagcagagaagctgtaactacaattaagcttcctcatcagagcaacccag
aaaaaaatcttgcagtgccagagcattaaactttgcaggtttggagattt
gtttttacttctgctcgcagggaggggctggtgcgtcagtgaaggtcaac
tctatggacttcagatggacttaactcatctgacaaggtaatctccatct
gctctgatgcttgtgcaatgagaggcacatggtgccatggcaacaaagaa
aagaagcctggggacatggcagacgagctggtcatggggtctctgccgtt
atatagagatgtttccctagagaagactatgtttgaggttatcttcatgc
cacaagagaaatgtttgcagacaattcaatcatccaaatgactacttttt
ctcccccaggaaagccaaagtacatcagcattgtaaagaaacttaaagac
caccaagtttatcctctaatttcataaatatatgaaacaatgtacatgcc
attgcatcagcatacacaacttaatcttaatttgaatatcatgctgtcgg
ttgacatctggttctcctttccagtgttctgcagctttggaaagatgaca
ctgtgaagtgggggtggaccccaatgggttgctgacacctgaatgtttct
gtgactgatctaataggagtgattatggggaatgaagaaataacagacgt
gcatacagaaaagctgggaccaggtaggttataggctctggtagagacac
atcaacaatccagaaactcctgtagcttattatactcagcccgatgagca
gtgggtttattgtatacagctgagtgaggaggtgggtttagtacattcag
tgcagtaagagggttattatatacagctgaaagaggagatgagtttatta
tatacaactgatgagagtgggtttattatacttagctgatgagtgtaaag
ttatcacacaccaactaatgtgagctggttagttaacctgtaggctctct
tggagcattccgactgtagtcaccctagaaaggagccgttgctga
gaattcaaatcacctactttgaagaaacttgtgcaatgcacaaataaaga
actgaaagtaaaaactcataaaagattaaatattgcaataatttgtactg
taaaagatcctgcataaatacataagaatagatggcaaatctaaggttga
aaattagaggttttgttgatattctaatgagatgttaatactttaaaaca
atcttataagtcttggtattgaactggatacaataagcataattaagtac
tactgaaataacatatacatgctaaaacgtcatcacagaaaccaaaagtt
aaagaaaccaataatcctaacaatataagataaatgtcaggttgctcatc
cataaaaaattctgaaagcaaaggattttgctttagttttccaaatgttc
atggaagaggtgtctataggaatcatagtggagaaggagagatttggagt
agaaggtaatagtcttaaaaaaataattattgattttggttattgaatgt
gataaattgggtgaagattgtgtgataaattggtgaatggcagcacctgc
aaaggaaattatgcatgtaactgacataaaaattgtattcagccctcacc
acaccctccctctctcgttagtaagactttcattttcttgttgtggccac
agtctcccaaactgaggtagctgtttacaattcatcttaccttaaatcag
agtgatgccccgtgattctatgtgctagtcattcatttttaccccatatt
tctttgggaccttttgtatgggggattctattttgagcatggaaatttaa
ggacagttcatggaaaacaatgagggggagaatgaaattgaggccctcct
agcaccatggaggtaaaaggaaagcctcttgtgttttctggagtggtcag
cagtcagtttgtaactgatgtcatgtcaggaggactggaaggaaagcgtt
gctacgctaagggatgatgagaaatcagaggacttggtgaactatgctgg
aacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29278534_29279700
seq2: B6Ng01-087E08.b_47_1191 (reverse)

seq1  TCAGCAACAGCTTCCTTTTCTAGGGTGACTACAGTCTGAGACTGCTTCCC  50
      |||||||| |||  | ||||||||||||||||||||   || ||||  ||
seq2  TCAGCAACGGCT--CCTTTCTAGGGTGACTACAGTC--GGAATGCT--CC  44

seq1  AAAGGAGAACCCCTACAGGGTTAACTTACCCAGCTCCACATTTAGTT-GT  99
      ||  |||    |||||| ||||||| || |||||| |||| |||||| ||
seq2  AAGAGAG----CCTACA-GGTTAAC-TAACCAGCT-CACA-TTAGTTGGT  86

seq1  GTGTGATAAACCTACCACCTCATTCAGCTAAGTATAATAAACCCACCTTC  149
      |||||||||   |||   |||| |||||||||||||||||||||||  ||
seq2  GTGTGATAACTTTAC--ACTCA-TCAGCTAAGTATAATAAACCCAC--TC  131

seq1  TCATTCAGTTGTATATAATAAACTCATCTCCTCTTTCAGCTGTATATAAT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TCAGTTGTATATAATAAACTCATCTCCTCTTTCAGCTGTATATAAT  180

seq1  AACCCCTCCTTACTGCACTGAATGTACTAAACCCACCTCCTCACTCAGCT  249
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AACCC--TCTTACTGCACTGAATGTACTAAACCCACCTCCTCACTCAGCT  228

seq1  GTATACAATAAACCCACCTGCTCATCGGGCTGAGTATAATAAGCTACAGG  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTATACAATAAACCCA-CTGCTCATCGGGCTGAGTATAATAAGCTACAGG  277

seq1  AGTTTCTGGATTGTTGATGTGTCTCTACCAGAGCCTATAACCTACCTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGATTGTTGATGTGTCTCTACCAGAGCCTATAACCTACCTGGT  327

seq1  CCCAGCTTTTCTGTATGCACGTCTGTTATTTCTTCATTCCCCATAATCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTTTCTGTATGCACGTCTGTTATTTCTTCATTCCCCATAATCAC  377

seq1  TCCTATTAGATCAGTCACAGAAACATTCAGGTGTCAGCAACCCATTGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAGATCAGTCACAGAAACATTCAGGTGTCAGCAACCCATTGGGG  427

seq1  TCCACCCCCACTTCACAGTGTCATCTTTCCAAAGCTGCAGAACACTGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCACTTCACAGTGTCATCTTTCCAAAGCTGCAGAACACTGGAA  477

seq1  AGGAGAACCAGATGTCAACCGACAGCATGATATTCAAATTAAGATTAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACCAGATGTCAACCGACAGCATGATATTCAAATTAAGATTAAGT  527

seq1  TGTGTATGCTGATGCAATGGCATGTACATTGTTTCATATATTTATGAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGCTGATGCAATGGCATGTACATTGTTTCATATATTTATGAAAT  577

seq1  TAGAGGATAAACTTGGTGGTCTTTAAGTTTCTTTACAATGCTGATGTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATAAACTTGGTGGTCTTTAAGTTTCTTTACAATGCTGATGTACT  627

seq1  TTGGCTTTCCTGGGGGAGAAAAAGTAGTCATTTGGATGATTGAATTGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCCTGGGGGAGAAAAAGTAGTCATTTGGATGATTGAATTGTCT  677

seq1  GCAAACATTTCTCTTGTGGCATGAAGATAACCTCAAACATAGTCTTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATTTCTCTTGTGGCATGAAGATAACCTCAAACATAGTCTTCTCT  727

seq1  AGGGAAACATCTCTATATAACGGCAGAGACCCCATGACCAGCTCGTCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACATCTCTATATAACGGCAGAGACCCCATGACCAGCTCGTCTGC  777

seq1  CATGTCCCCAGGCTTCTTTTCTTTGTTGCCATGGCACCATGTGCCTCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCCAGGCTTCTTTTCTTTGTTGCCATGGCACCATGTGCCTCTCA  827

seq1  TTGCACAAGCATCAGAGCAGATGGAGATTACCTTGTCAGATGAGTTAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAGCATCAGAGCAGATGGAGATTACCTTGTCAGATGAGTTAAGT  877

seq1  CCATCTGAAGTCCATAGAGTTGACCTTCACTGACGCACCAGCCCCTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAAGTCCATAGAGTTGACCTTCACTGACGCACCAGCCCCTCCCT  927

seq1  GCGAGCAGAAGTAAAAACAAATCTCCAAACCTGCAAAGTTTAATGCTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCAGAAGTAAAAACAAATCTCCAAACCTGCAAAGTTTAATGCTCTG  977

seq1  GCACTGCAAGATTTTTTTCTGGGTTGCTCTGATGAGGAAGCTTAATTGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCAAGATTTTTTTCTGGGTTGCTCTGATGAGGAAGCTTAATTGTA  1027

seq1  GTTACAGCTTCTCTGCTTGAGATGGGAGTGAATACAAAAAAAGGAAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCTTCTCTGCTTGAGATGGGAGTGAATACAAAAAAAGGAAAAAG  1077

seq1  AAAAAAAGAGAGGACAAGGCTCCTGGACAGCCATTGAAACAAAATAGAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAGAGGACAAGGCTCCTGGACAGCCATTGAAACAAAATAGAAA  1127

seq1  TATGTCTTCTTTGAATTC  1167
      ||||||||||||||||||
seq2  TATGTCTTCTTTGAATTC  1145

seq1: chr3_29137944_29138953
seq2: B6Ng01-087E08.g_70_1074

seq1  GAATTCAAATCACCTACTTTGAAGAAACTTGTGCAATGCACAAATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCACCTACTTTGAAGAAACTTGTGCAATGCACAAATAAAGA  50

seq1  ACTGAAAGTAAAAACTCATAAAAGATTAAATATTGCAATAATTTGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGTAAAAACTCATAAAAGATTAAATATTGCAATAATTTGTACTG  100

seq1  TAAAAGATCCTGCATAAATACATAAGAATAGATGGCAAATCTAAGGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATCCTGCATAAATACATAAGAATAGATGGCAAATCTAAGGTTGA  150

seq1  AAATTAGAGGTTTTGTTGATATTCTAATGAGATGTTAATACTTTAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGGTTTTGTTGATATTCTAATGAGATGTTAATACTTTAAAACA  200

seq1  ATCTTATAAGTCTTGGTATTGAACTGGATACAATAAGCATAATTAAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAAGTCTTGGTATTGAACTGGATACAATAAGCATAATTAAGTAC  250

seq1  TACTGAAATAACATATACATGCTAAAACGTCATCACAGAAACCAAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATAACATATACATGCTAAAACGTCATCACAGAAACCAAAAGTT  300

seq1  AAAGAAACCAATAATCCTAACAATATAAGATAAATGTCAGGTTGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAATAATCCTAACAATATAAGATAAATGTCAGGTTGCTCATC  350

seq1  CATAAAAAATTCTGAAAGCAAAGGATTTTGCTTTAGTTTTCCAAATGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAATTCTGAAAGCAAAGGATTTTGCTTTAGTTTTCCAAATGTTC  400

seq1  ATGGAAGAGGTGTCTATAGGAATCATAGTGGAGAAGGAGAGATTTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGGTGTCTATAGGAATCATAGTGGAGAAGGAGAGATTTGGAGT  450

seq1  AGAAGGTAATAGTCTTAAAAAAATAATTATTGATTTTGGTTATTGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAATAGTCTTAAAAAAATAATTATTGATTTTGGTTATTGAATGT  500

seq1  GATAAATTGGGTGAAGATTGTGTGATAAATTGGTGAATGGCAGCACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTGGGTGAAGATTGTGTGATAAATTGGTGAATGGCAGCACCTGC  550

seq1  AAAGGAAATTATGCATGTAACTGACATAAAAATTGTATTCAGCCCTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATTATGCATGTAACTGACATAAAAATTGTATTCAGCCCTCACC  600

seq1  ACACCCTCCCTCTCTCGTTAGTAAGACTTTCATTTTCTTGTTGTGGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCCCTCTCTCGTTAGTAAGACTTTCATTTTCTTGTTGTGGCCAC  650

seq1  AGTCTCCCAAACTGAGGTAGCTGTTTACAATTCATCTAACCTTAAATCAG  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTCTCCCAAACTGAGGTAGCTGTTTACAATTCATCTTACCTTAAATCAG  700

seq1  AGGTGATGCCCCGTGATTCTATGTGCTAGTCATTCATTTTTACCCCATAT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGATGCCCCGTGATTCTATGTGCTAGTCATTCATTTTTACCCCATAT  749

seq1  TTCTTT-GGACCTTTTGTATGGGTGATTCTA-TCTGAGCAATGGAATTTA  798
      |||||| |||||||||||||||| ||||||| | ||||||  | ||||||
seq2  TTCTTTGGGACCTTTTGTATGGGGGATTCTATTTTGAGCATGGAAATTTA  799

seq1  AGGACAGTCAATGG-AGACAATGA-GGGGAG-ATGAAATTGAGGCCCTCT  845
      ||||||||  |||| | ||||||| |||||| ||||||||||||||||| 
seq2  AGGACAGTTCATGGAAAACAATGAGGGGGAGAATGAAATTGAGGCCCTCC  849

seq1  TAGCACCAT-GAGGTAAAAAGGAAAGCCTCTTGGTGTTTTCTGGAGTGGC  894
      ||||||||| ||||| |||||||||||||||| |||||||||||||||| 
seq2  TAGCACCATGGAGGT-AAAAGGAAAGCCTCTT-GTGTTTTCTGGAGTGGT  897

seq1  CAGCAGCCAGTTTGTAAACATGATGTCATGTCAGGAGGACTGAAGTGAAA  944
      |||||| ||||||||||   |||||||||||||||||||||| |  ||||
seq2  CAGCAGTCAGTTTGTAA--CTGATGTCATGTCAGGAGGACTGGAAGGAAA  945

seq1  GCGTTTGCTACGGCTAGGGATGATGGAGAGAATACAGAGGAGCTTGTGTG  994
      ||| ||||||||   |||||||||   |||||  ||||||| |||| |||
seq2  GCG-TTGCTACGCTAAGGGATGAT---GAGAAATCAGAGGA-CTTG-GTG  989

seq1  AACCTATGCT-GAACCA  1010
      || ||||||| ||||||
seq2  AA-CTATGCTGGAACCA  1005