BAC Information

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BAC

Clone NameB6Ng01-087J12
Chromosome3 (Build37)
Map Location 85,169,111 - 85,315,810
singlet/doubletdoublet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J12.bB6Ng01-087J12.g
ACCDH900676DH900677
length1,154818
definitionDH900676|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J12, 5' end.DH900677|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,314,647 - 85,315,810)(85,169,111 - 85,169,929)
sequence
gaattctctgtccccaattatgtatgatgtgcacatccttgttctcatga
ggtggctgaggggttgatctttgcatggagtggaggggaggtgcatgaca
ctcaggcatggagactatcttcaggggtgtaggtcctgtggtcctgaaaa
gagcaggagggaaaaaagtgggtgcatagacaagaccttcttttctattc
ttgataagcaagaccccagattccacatgtgcctgattctctggggcaat
gccttggcaactgatctggtgtttctcagattttcatattctaattagtg
acaatatttaggaagtattactggatctgcttttctacattggtgtgtat
cggtttttttttcccttaaaactcttttgaagcgggaaatattaaaaaat
gaacccaccggctctccgcagggctggaccacgctcccctgccaccattt
gcaactctctccagctagcccctgctgagcccaatctctgtgctcccagc
tcttgttctcttgtccctgacactgctagttcttcctcagccataaaccc
atgtagtcagctatcccacattctagtaactaaatggaacctccaacctc
gaggttgtatattaccatacccagtaacccagtaaaatcaagactcttaa
agcttaattaaccaatcagatttatgtatcaataatatcacaatttacaa
gatgccaacttagtaattttagagccaattgatagtgataaaggttttat
cccaattaatctaaccttactataccacaacttcttgtggctggtaaatg
ccatgcaggttcataaccgcagccatcgtccttcctctcctaccttctga
tgttctctgtctttgcaactcttagctccacctcctgtttccctggccag
tcacaggcctcctttgcactaaagtaattggacagggaaaatcctgtgac
actctttagctcatgagtagatttagataggcatttgacgaacaatctgt
tctgcatttagaaagatttctagtcttgggaaatactgcgtgtgtccaca
ttttatgtccccacatatctttcttatcaaggctatcattgtgggttaat
acaaactgcttcatcagctatctaggacatagcagatctggcatgcaggc
tggg
gaattcttttcaaggagaactgttctatattttcccccaagtgtaagcac
tgtgcttaatttaggattggggttagataccaaggagcagagatttttaa
ttcttcatcaaaaaaaaatattttttttgttactgctgttattttgactt
cttttctggtacttttccaattttcccaaaatgatgcaagtatctttatt
acattaagtaacaagaatttgttttgttttgtttttgtttggtttctttg
gtggggttgttttttctatctctctttcaaagatcatttagctctctcat
ctgcaggactcagttagtacatttcatctttcattccagaaggaactatt
acaatgttctctgtaatctgaatttcatagtaaggttacatttgatagct
ctttaacaaacaccttcagacaaacctggcagaataatcttgaaaagctg
aggaccacacccacctcccctggagtgctggggatggcctgcctagagtt
tggccacaagtctgtctccatcagagaactgtgaattccatacctaacaa
gagaactgtggctcacacaccagtgggtgtccctggctagctaagctgaa
ggcctggcaatgacctctggcaatttcatttggtttagcccttttgcccc
agtggaaacctgatccttttgctgttgttttaacttttaaaaaatatttg
tttattttatgtgtatgagtattttgttcatacctgcatatatgtgcacc
atgtgtttgttttgtgcactcagaggccagaagaggatgtccgaagctct
agaatgaaattcaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85314647_85315810
seq2: B6Ng01-087J12.b_47_1200 (reverse)

seq1  CCCAGGCCTGCATTGCCAGATCTGGCTATGTCCCATAAGATAGCTGATGA  50
      |||| ||||||| |||||||||| |||||||||    |||||||||||| 
seq2  CCCA-GCCTGCA-TGCCAGATCT-GCTATGTCC---TAGATAGCTGATG-  43

seq1  AAGCAGTTTGTATTAAAACCACAATGATAGCCTGGATAAGGAAGATATGT  100
      |||||||||||||| || ||||||||||||||| |||||| |||||||||
seq2  AAGCAGTTTGTATT-AACCCACAATGATAGCCTTGATAAGAAAGATATGT  92

seq1  GTGGACAT-AAATGTGGACAACACGCAGTATTT-CCAAGACTAGAAATCT  148
      | |||||| |||||||||| ||||||||||||| ||||||||||||||||
seq2  GGGGACATAAAATGTGGAC-ACACGCAGTATTTCCCAAGACTAGAAATCT  141

seq1  TTCTAAATGCAGAACAGATTGTTCGTTCAAATGCCTATCTTAAATCTACT  198
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TTCTAAATGCAGAACAGATTGTTCG-TCAAATGCCTATC-TAAATCTACT  189

seq1  CATGAGCTAAAGAGTGTCACAGGATTTTTCCCTGTCCAATTACTTTAGTG  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGAGCTAAAGAGTGTCACAGGA-TTTTCCCTGTCCAATTACTTTAGTG  238

seq1  CAAAGGAGGCCTGTGACTGGCCAGGGAAACAGGAGGTGGAGCTAAGAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGCCTGTGACTGGCCAGGGAAACAGGAGGTGGAGCTAAGAGTT  288

seq1  GCAAAGACAGAGAACATCAGAAGGTAGGAGAGGAAGGACGATGGCTGCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACAGAGAACATCAGAAGGTAGGAGAGGAAGGACGATGGCTGCGG  338

seq1  TTATGAACCTGCATGGCATTTACCAGCCACAAGAAGTTGTGGTATAGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACCTGCATGGCATTTACCAGCCACAAGAAGTTGTGGTATAGTAA  388

seq1  GGTTAGATTAATTGGGATAAAACCTTTATCACTATCAATTGGCTCTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGATTAATTGGGATAAAACCTTTATCACTATCAATTGGCTCTAAAA  438

seq1  TTACTAAGTTGGCATCTTGTAAATTGTGATATTATTGATACATAAATCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGTTGGCATCTTGTAAATTGTGATATTATTGATACATAAATCTG  488

seq1  ATTGGTTAATTAAGCTTTAAGAGTCTTGATTTTACTGGGTTACTGGGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAATTAAGCTTTAAGAGTCTTGATTTTACTGGGTTACTGGGTAT  538

seq1  GGTAATATACAACCTCGAGGTTGGAGGTTCCATTTAGTTACTAGAATGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATATACAACCTCGAGGTTGGAGGTTCCATTTAGTTACTAGAATGTG  588

seq1  GGATAGCTGACTACATGGGTTTATGGCTGAGGAAGAACTAGCAGTGTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTGACTACATGGGTTTATGGCTGAGGAAGAACTAGCAGTGTCAG  638

seq1  GGACAAGAGAACAAGAGCTGGGAGCACAGAGATTGGGCTCAGCAGGGGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAGAACAAGAGCTGGGAGCACAGAGATTGGGCTCAGCAGGGGCT  688

seq1  AGCTGGAGAGAGTTGCAAATGGTGGCAGGGGAGCGTGGTCCAGCCCTGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGAGTTGCAAATGGTGGCAGGGGAGCGTGGTCCAGCCCTGCG  738

seq1  GAGAGCCGGTGGGTTCATTTTTTAATATTTCCCGCTTCAAAAGAGTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCGGTGGGTTCATTTTTTAATATTTCCCGCTTCAAAAGAGTTTTA  788

seq1  AGGGAAAAAAAAACCGATACACACCAATGTAGAAAAGCAGATCCAGTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAAAAACCGATACACACCAATGTAGAAAAGCAGATCCAGTAAT  838

seq1  ACTTCCTAAATATTGTCACTAATTAGAATATGAAAATCTGAGAAACACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAATATTGTCACTAATTAGAATATGAAAATCTGAGAAACACCA  888

seq1  GATCAGTTGCCAAGGCATTGCCCCAGAGAATCAGGCACATGTGGAATCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTGCCAAGGCATTGCCCCAGAGAATCAGGCACATGTGGAATCTG  938

seq1  GGGTCTTGCTTATCAAGAATAGAAAAGAAGGTCTTGTCTATGCACCCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGCTTATCAAGAATAGAAAAGAAGGTCTTGTCTATGCACCCACT  988

seq1  TTTTTCCCTCCTGCTCTTTTCAGGACCACAGGACCTACACCCCTGAAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTCCTGCTCTTTTCAGGACCACAGGACCTACACCCCTGAAGAT  1038

seq1  AGTCTCCATGCCTGAGTGTCATGCACCTCCCCTCCACTCCATGCAAAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATGCCTGAGTGTCATGCACCTCCCCTCCACTCCATGCAAAGAT  1088

seq1  CAACCCCTCAGCCACCTCATGAGAACAAGGATGTGCACATCATACATAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCAGCCACCTCATGAGAACAAGGATGTGCACATCATACATAAT  1138

seq1  TGGGGACAGAGAATTC  1164
      ||||||||||||||||
seq2  TGGGGACAGAGAATTC  1154

seq1: chr3_85169111_85169929
seq2: B6Ng01-087J12.g_70_887

seq1  GAATTCTTTTCAAGGAGAACTGTTCTATATTTTCCCCCAAGTGTAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAAGGAGAACTGTTCTATATTTTCCCCCAAGTGTAAGCAC  50

seq1  TGTGCTTAATTTAGGATTGGGGTTAGATACCAAGGAGCAGAGATTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAATTTAGGATTGGGGTTAGATACCAAGGAGCAGAGATTTTTAA  100

seq1  TTCTTCATCAAAAAAAAATATTTTTTTTGTTACTGCTGTTATTTTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCAAAAAAAAATATTTTTTTTGTTACTGCTGTTATTTTGACTT  150

seq1  CTTTTCTGGTACTTTTCCAATTTTCCCAAAATGATGCAAGTATCTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGTACTTTTCCAATTTTCCCAAAATGATGCAAGTATCTTTATT  200

seq1  ACATTAAGTAACAAGAATTTGTTTTGTTTTGTTTTTGTTTGGTTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGTAACAAGAATTTGTTTTGTTTTGTTTTTGTTTGGTTTCTTTG  250

seq1  GTGGGGTTGTTTTTTCTATCTCTCTTTCAAAGATCATTTAGCTCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTGTTTTTTCTATCTCTCTTTCAAAGATCATTTAGCTCTCTCAT  300

seq1  CTGCAGGACTCAGTTAGTACATTTCATCTTTCATTCCAGAAGGAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGACTCAGTTAGTACATTTCATCTTTCATTCCAGAAGGAACTATT  350

seq1  ACAATGTTCTCTGTAATCTGAATTTCATAGTAAGGTTACATTTGATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTCTGTAATCTGAATTTCATAGTAAGGTTACATTTGATAGCT  400

seq1  CTTTAACAAACACCTTCAGACAAACCTGGCAGAATAATCTTGAAAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAAACACCTTCAGACAAACCTGGCAGAATAATCTTGAAAAGCTG  450

seq1  AGGACCACACCCACCTCCCCTGGAGTGCTGGGGATGGCCTGCCTAGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACACCCACCTCCCCTGGAGTGCTGGGGATGGCCTGCCTAGAGTT  500

seq1  TGGCCACAAGTCTGTCTCCATCAGAGAACTGTGAATTCCATACCTAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAAGTCTGTCTCCATCAGAGAACTGTGAATTCCATACCTAACAA  550

seq1  GAGAACTGTGGCTCACACACCAGTGGGTGTCCCTGGCTAGCTAAGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGTGGCTCACACACCAGTGGGTGTCCCTGGCTAGCTAAGCTGAA  600

seq1  GGCCTGGCAATGACCTCTGGCAATTTCATTTGGTTTAGCCCTTTTGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCAATGACCTCTGGCAATTTCATTTGGTTTAGCCCTTTTGCCCC  650

seq1  AGTGGAAACCTGATCCTTTTGCTGTTGTTTTAACTTTTAAAAAATATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAACCTGATCCTTTTGCTGTTGTTTTAACTTTTAAAAAATATTTG  700

seq1  TTTATTTTATGTGTATGAGTATTTTGTTCATACCTGCATATATGTGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATGTGTATGAGTATTTTGTTCATACCTGCATATATGTGCACC  750

seq1  ATGTGTTTGTTTTGTGCACTCAGAGGCCAGAAGAGGATGTCCGAAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGTTTTGTGCACTCAGAGGCCAGAAGAGGATGTCCGAAGCTCT  800

seq1  AGAACTGAAATTCAAATGG  819
      |||| ||||||||||||||
seq2  AGAA-TGAAATTCAAATGG  818