BAC Information

Click to search

BAC

Clone NameB6Ng01-087N04
Chromosome3 (Build37)
Map Location 85,340,089 - 85,488,140
singlet/doubletdoublet
Overlap geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik
Upstream geneArfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N04.bB6Ng01-087N04.g
ACCDH900840DH900841
length1,2771,106
definitionDH900840|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N04, 5' end.DH900841|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,340,089 - 85,341,364)(85,487,011 - 85,488,140)
sequence
gaattcctcattaataatttatgacaagccttttccggcaacctttaatt
gtcaacagatgtggacacactactttttgccatcgtctttactctgcaaa
gcatgccattctagaagcgtgtctctgaatcatcataaatcacttgagaa
agttcattaaaaggaacgctgtggaatggctctccccataaagtgacact
gtcacaagtgcagaatcttagggaacgtgcaaacccactggctgtgagtc
cagaaggttctgtgtccttattcgcccaacttcaagtcttctcaaacccc
aagtgtaacttggtatgccggtccatcctggctggcaaagggacccttcc
ttcccactgccctgatctactgtcctatttattgtcccctctcccctgag
gttgattctagtttctgcagtcagtgtttcttgtaatataatctaaaggg
aatgttgcctatgcaaaggcaagattctggggtaggagtgaggcttagca
gtagaacatttgcctagtgtgtgcaaggccctgaatttgatcaatcattg
gcccccgcagaaaagacagctttcaaataaacacgttggtatgtctttgc
ttggacacactaggctttgtccgggtgttgaaaatccactgaacttgagg
cactgagagaggtaaggagagatgctggttagcttaaaaacaagtgctca
gcaggtcaccccttgggatctagacctggctgacagctcctgggtcaacc
ctagtgtttgatagtcaccagtgtgactctgtcttttaattatggcgaac
tcctctcaaggactgccagggaatgctgtagtggttggaagaggaatgat
ctgaccttcttgaaggagattccacgtttggaacaagagcttagtatgga
gtgccattgtctgtctcttaactgtgacaccctgcagtaaatcagccagt
tagagcccatggccacagtccacatgggcagtgaagtggacaggactagc
caggggctgctgtgttggatgaagttgccggaggccaatgtctcctgtga
agatggattcttacttatttgctggtttttcacaggcacccacagaccca
cattttcagtgtatttggtttcaaacattttgaggcaggagataggccgt
gacgcccttctgtcctcaataagtgtaccaaaaggcatctcagctgtctc
tcagccgtgggagtgaaagggatacctccacatcaggaacctgtcgcaca
ctctccagacccttggattattcctag
gaattcatgtgtttataaaagaaaattcatttaatttttttgagtgaact
ccttcgggaagaagattttcattctcagagcactatagaatatggaacca
aagagaaaaaaattgcccaatagcaagagagaatctaggcttggagctgc
agactctggagagaactggccaggttataagtactttccagtgaggcctg
tcttgtaaataaccggtgtcatatttgaagacaacttagaacaataaatt
gtctacagatgaagtagggaagattttatgtgtgccgggagttgaagggg
cacattcttgttatctagatctttgaagattcacagtaagagcacgggca
tctctcaggcaggcactgggtttctagccaactcttcccccaagggaact
gctctactgaatatatttgttcctggcagcaatatgtgttttatgaaaac
tgccagggatagagagaccattttgttctgtaattctgggttctttgtca
cctgttgggagtggagttccctgcctgacactgacagagcccatgttgat
tgtccccagctttgtgtggtgtccttggcgctgttcagaactctcatcgg
cttacactgtgaagatgtgatgttacagctagttttaaggtgagtttcca
tcattttgttctcgtgaaagaaacgtttcctctgcactactactactgtt
ttgtttcactttaattgcataaatgaagcaaggaccgtgcctctgaggaa
gaaaattattaagagagccaatttaatctttttgctgttatttaccaaag
ttaattttgtttgattatggaaagtttttagtgggggcatttgtattata
ttataaacgtgtccctgaaacaataaggagaatggtggaaaatgtgcaag
tattaaagctcttggggtcatggctgcagctcatcctcctgaggtaccct
ttcttcgtttgccctcttaaggacccctattataaaacacttttcaatat
aaacactggatttatgctcagcttttcttagtacatgcacatgactgtct
aaggtggtgagctcattgtggaccggcaggaacgaagaggacaggtggga
cgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85340089_85341364
seq2: B6Ng01-087N04.b_47_1323

seq1  GAATTCCTCATTAATAATTTATGACAAGCCTTTTCCGGCAACCTTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTAATAATTTATGACAAGCCTTTTCCGGCAACCTTTAATT  50

seq1  GTCAACAGATGTGGACACACTACTTTTTGCCATCGTCTTTACTCTGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGATGTGGACACACTACTTTTTGCCATCGTCTTTACTCTGCAAA  100

seq1  GCATGCCATTCTAGAAGCGTGTCTCTGAATCATCATAAATCACTTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCATTCTAGAAGCGTGTCTCTGAATCATCATAAATCACTTGAGAA  150

seq1  AGTTCATTAAAAGGAACGCTGTGGAATGGCTCTCCCCATAAAGTGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTAAAAGGAACGCTGTGGAATGGCTCTCCCCATAAAGTGACACT  200

seq1  GTCACAAGTGCAGAATCTTAGGGAACGTGCAAACCCACTGGCTGTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGTGCAGAATCTTAGGGAACGTGCAAACCCACTGGCTGTGAGTC  250

seq1  CAGAAGGTTCTGTGTCCTTATTCGCCCAACTTCAAGTCTTCTCAAACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTTCTGTGTCCTTATTCGCCCAACTTCAAGTCTTCTCAAACCCC  300

seq1  AAGTGTAACTTGGTATGCCGGTCCATCCTGGCTGGCAAAGGGACCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAACTTGGTATGCCGGTCCATCCTGGCTGGCAAAGGGACCCTTCC  350

seq1  TTCCCACTGCCCTGATCTACTGTCCTATTTATTGTCCCCTCTCCCCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGCCCTGATCTACTGTCCTATTTATTGTCCCCTCTCCCCTGAG  400

seq1  GTTGATTCTAGTTTCTGCAGTCAGTGTTTCTTGTAATATAATCTAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCTAGTTTCTGCAGTCAGTGTTTCTTGTAATATAATCTAAAGGG  450

seq1  AATGTTGCCTATGCAAAGGCAAGATTCTGGGGTAGGAGTGAGGCTTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCTATGCAAAGGCAAGATTCTGGGGTAGGAGTGAGGCTTAGCA  500

seq1  GTAGAACATTTGCCTAGTGTGTGCAAGGCCCTGAATTTGATCAATCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACATTTGCCTAGTGTGTGCAAGGCCCTGAATTTGATCAATCATTG  550

seq1  GCCCCCGCAGAAAAGACAGCTTTCAAATAAACACGTTGGTATGTCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGCAGAAAAGACAGCTTTCAAATAAACACGTTGGTATGTCTTTGC  600

seq1  TTGGACACACTAGGCTTTGTCCGGGTGTTGAAAATCCACTGAACTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACACTAGGCTTTGTCCGGGTGTTGAAAATCCACTGAACTTGAGG  650

seq1  CACTGAGAGAGGTAAGGAGAGATGCTGGTTAGCTTAAAAACAAGTGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGAGGTAAGGAGAGATGCTGGTTAGCTTAAAAACAAGTGCTCA  700

seq1  GCAGGTCACCCCTTGGGATCTAGACCTGGCTGACAGCTCCTGGGTCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCACCCCTTGGGATCTAGACCTGGCTGACAGCTCCTGGGTCAACC  750

seq1  CTAGTGTTTGATAGTCACCAGTGTGACTCTGTCTTTTAATTATGGCGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTTGATAGTCACCAGTGTGACTCTGTCTTTTAATTATGGCGAAC  800

seq1  TCCTCTCAAGGACTGCCAGGGAATGCTGTAGTGGTTGGAAGAGGAATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAAGGACTGCCAGGGAATGCTGTAGTGGTTGGAAGAGGAATGAT  850

seq1  CTGACCTTCTTGAAGGAGATTCCACGTTTGGAACAAGAGCTTAGTATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTCTTGAAGGAGATTCCACGTTTGGAACAAGAGCTTAGTATGGA  900

seq1  GTGCCATTGTCTGTCTCTTAACTGTGACACCCTGCAGTAAATCAGGCCAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGCCATTGTCTGTCTCTTAACTGTGACACCCTGCAGTAAATCA-GCCAG  949

seq1  TTAGAGCCCATGGCCAACAGTCCACATGGGCAGTGAAGTGGACAGGACTA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCATGGCC-ACAGTCCACATGGGCAGTGAAGTGGACAGGACTA  998

seq1  GCCAGGGGCTGCTGTGGTGGATGAAGGTGCCGGAGGCCAATGTTCTCTGT  1050
      |||||||||||||||| ||||||||| ||||||||||||||||   ||||
seq2  GCCAGGGGCTGCTGTGTTGGATGAAGTTGCCGGAGGCCAATGTCTCCTGT  1048

seq1  GACAGATGGATTCTTACTTATTTGCTGG-TTTTCACAGTCA-CCACAGAC  1098
      || ||||||||||||||||||||||||| ||||||||| || ||||||||
seq2  GA-AGATGGATTCTTACTTATTTGCTGGTTTTTCACAGGCACCCACAGAC  1097

seq1  CCACATTTTCAAGTGTAATTTGTTTCAAACATTTTGAGGCATGAGAGTAG  1148
      |||||||||| |||||| || |||||||||||||||||||| |||| |||
seq2  CCACATTTTC-AGTGTATTTGGTTTCAAACATTTTGAGGCAGGAGA-TAG  1145

seq1  AGCTGTGACG-GCTTCTG-CCTCAGTAAGTG-ACCAAGAATGCATC-CAG  1194
       || ||||||  |||||| ||||| |||||| ||||| || ||||| |||
seq2  -GCCGTGACGCCCTTCTGTCCTCAATAAGTGTACCAA-AAGGCATCTCAG  1193

seq1  TTGTTCTC-CAGGCTGTGGAGTGGAAGAGGGGAGACACTCAAACCAGAGA  1243
       || |||| ||| |   |||||| ||   |||| ||   || | |||  |
seq2  CTG-TCTCTCAGCCGTGGGAGTGAAA---GGGATACCTCCACATCAGGAA  1239

seq1  AATCTGGCCAACTC----GACGCTTGG-TTATTCCTAG  1276
        | | ||  ||||    ||| ||||| ||||||||||
seq2  CCTGTCGCACACTCTCCAGACCCTTGGATTATTCCTAG  1277

seq1: chr3_85487011_85488140
seq2: B6Ng01-087N04.g_67_1172 (reverse)

seq1  CCCACGTTCCCCACCTTGTCCTCTATCTGTTCCCTGCCGGTCTCACAATG  50
      |||||||  |||||| |||||||| || ||| |||||||||| |||||| 
seq2  CCCACGT--CCCACC-TGTCCTCT-TC-GTT-CCTGCCGGTC-CACAAT-  42

seq1  GAGCTCA-CACACTAGACAGTCATGGTGCAATGTTACTAAAGAAAAGGCT  99
      ||||||| |||  ||||||||||| |||| ||| |||| ||||||| |||
seq2  GAGCTCACCACCTTAGACAGTCAT-GTGC-ATG-TACT-AAGAAAA-GCT  87

seq1  GAGCATTAAATTCAAGTGTTTTATATTTGAAAAAGTTGTTTTTAATAATA  149
      ||||||  || || |||| |||||| |||||||    || ||| ||||||
seq2  GAGCAT--AAATCCAGTG-TTTATA-TTGAAAA----GTGTTTTATAATA  129

seq1  GGGGTCCCTTAAGAGGGCAAACGAAGAAAGGGTACCTCAGGAGGATGAGC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGT-CCTTAAGAGGGCAAACGAAGAAAGGGTACCTCAGGAGGATGAGC  178

seq1  TGCAGCCATGACCCCAAAGAGCTTTAATACTTGCACATTTTTCCACCATT  249
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TGCAGCCATGACCCC-AAGAGCTTTAATACTTGCACA-TTTTCCACCATT  226

seq1  CTCCTTATTGTTTTCAGGGACACGTTTATAATATAATACAAATGCCCCCA  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTG-TTTCAGGGACACGTTTATAATATAATACAAATGCCCCCA  275

seq1  CTAAAAACTTTCCATAATCAAACAAAATTAACTTTGGTAAATAACAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACTTTCCATAATCAAACAAAATTAACTTTGGTAAATAACAGCAA  325

seq1  AAAGATTAAATTGGCTCTCTTAATAATTTTCTTCCTCAGAGGCACGGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAAATTGGCTCTCTTAATAATTTTCTTCCTCAGAGGCACGGTCC  375

seq1  TTGCTTCATTTATGCAATTAAAGTGAAACAAAACAGTAGTAGTAGTGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATTTATGCAATTAAAGTGAAACAAAACAGTAGTAGTAGTGCAG  425

seq1  AGGAAACGTTTCTTTCACGAGAACAAAATGATGGAAACTCACCTTAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACGTTTCTTTCACGAGAACAAAATGATGGAAACTCACCTTAAAAC  475

seq1  TAGCTGTAACATCACATCTTCACAGTGTAAGCCGATGAGAGTTCTGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAACATCACATCTTCACAGTGTAAGCCGATGAGAGTTCTGAACA  525

seq1  GCGCCAAGGACACCACACAAAGCTGGGGACAATCAACATGGGCTCTGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAAGGACACCACACAAAGCTGGGGACAATCAACATGGGCTCTGTCA  575

seq1  GTGTCAGGCAGGGAACTCCACTCCCAACAGGTGACAAAGAACCCAGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGCAGGGAACTCCACTCCCAACAGGTGACAAAGAACCCAGAATT  625

seq1  ACAGAACAAAATGGTCTCTCTATCCCTGGCAGTTTTCATAAAACACATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAAAATGGTCTCTCTATCCCTGGCAGTTTTCATAAAACACATAT  675

seq1  TGCTGCCAGGAACAAATATATTCAGTAGAGCAGTTCCCTTGGGGGAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAGGAACAAATATATTCAGTAGAGCAGTTCCCTTGGGGGAAGAG  725

seq1  TTGGCTAGAAACCCAGTGCCTGCCTGAGAGATGCCCGTGCTCTTACTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAGAAACCCAGTGCCTGCCTGAGAGATGCCCGTGCTCTTACTGTG  775

seq1  AATCTTCAAAGATCTAGATAACAAGAATGTGCCCCTTCAACTCCCGGCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAAAGATCTAGATAACAAGAATGTGCCCCTTCAACTCCCGGCAC  825

seq1  ACATAAAATCTTCCCTACTTCATCTGTAGACAATTTATTGTTCTAAGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATCTTCCCTACTTCATCTGTAGACAATTTATTGTTCTAAGTTG  875

seq1  TCTTCAAATATGACACCGGTTATTTACAAGACAGGCCTCACTGGAAAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATATGACACCGGTTATTTACAAGACAGGCCTCACTGGAAAGTA  925

seq1  CTTATAACCTGGCCAGTTCTCTCCAGAGTCTGCAGCTCCAAGCCTAGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCTGGCCAGTTCTCTCCAGAGTCTGCAGCTCCAAGCCTAGATT  975

seq1  CTCTCTTGCTATTGGGCAATTTTTTTCTCTTTGGTTCCATATTCTATAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGCTATTGGGCAATTTTTTTCTCTTTGGTTCCATATTCTATAGT  1025

seq1  GCTCTGAGAATGAAAATCTTCTTCCCGAAGGAGTTCACTCAAAAAAATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGAATGAAAATCTTCTTCCCGAAGGAGTTCACTCAAAAAAATTA  1075

seq1  AATGAATTTTCTTTTATAAACACATGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  AATGAATTTTCTTTTATAAACACATGAATTC  1106