BAC Information

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BAC

Clone NameB6Ng01-087O09
Chromosome3 (Build37)
Map Location 95,553,576 - 95,704,613
singlet/doubletdoublet
Overlap geneTars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14
Upstream geneLOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1
Downstream geneAnp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087O09.bB6Ng01-087O09.g
ACCDH900898DH900899
length1,2081,114
definitionDH900898|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O09, 5' end.DH900899|Mus musculus domesticus DNA, BAC clone: B6Ng01-087O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,553,576 - 95,554,777)(95,703,477 - 95,704,613)
sequence
gaattcctagtcctctgcctccatttcccaagtgtggggattacaggcaa
catgcctgctttgaacaaactgacaaattatagcctttcccttaaacact
cttgtctgagctagctagctttgtttgcatggtgtggccttaccagtgct
acaggaatagtcagtcttattttatagacacaaacagcaggtaaggagat
ctggccaaagctgcatacctcatgagtagcagaatcagactgcagatgtt
gcgtttacaggaggttttttctacacatacatctgtctcttgctagcttc
catctcatccagtaacacaaagtctaggaacagcactttcagggaagaca
cgaccatgccttggtcacagctttccctagtatctgtcaaacagtgtcac
caaccccacatgaccctgtctagcctgctcacggtctcttgcttgatttc
ccttaatgcagatccagactacagagtctaagttgaattctggactctgg
caggggctccagtacctccaatgaaaccttgggatttcagaatggagaaa
accctcttttctcctagatctcctcatcagccatgaggacagagaagggg
taggagagaaaggaccaccctctccattctctagctttctcctgggataa
tgggagtaccaccctaaccctaaccccactactcaccgtgagcagcttca
gtgctccaatctgtccagtgtgccgaagatgggggcctcggcacaggtca
actgacatgccacacctgagagaaggaggtgagccagtgaaacagacatg
cccagatctgagagaaggaggtacccaggctctcctgtttcccctttttt
cctccctttcagggcttcagctgacagaagaggtgttgaggagagaactg
tcttgctgacagagcaatggcaaaacaaaaacaaacccctcctcccattt
ccttttttctggagcagtacggttcatctgccggccaccctttcctttta
ccccaggtctggcctcttcagagcgcccctgcgttctttccttcttgaca
agctcacccatacactgttgccggttggccttttcactttctccctcgat
tagatgaagccttaaagtgttgtcctggaaaaggcagaacaggacatgaa
atcgctaaggaccgccttgggcaataccctttcttcagctacccagttcc
tctccaca
gaattccaggacagccagggctacagtctgtgtacagaggatccctgtct
caaaaaaaaccaaaaaacaaaaaccataaaacattgaggttcaggctcct
gcagctaaggtgggatcagacgtccatgatcaagctcagtgtacaagcag
tgtcatagcactgacttaatcattagcagagaggttcctttgctagagag
aaccaggcaattctggggggaagaaggaagaggagaaccctatgtcccaa
gtggtggcaagctggggcgggaactgtccatcctagcctgctctttcccc
acagtgcagctttccctgcccccaaccctgcacctgggtggactgccccg
aaaatacacagcagcccagctccacctgcactggggtcagagaggatccc
tcgagggatcagagcaccagatcaacagtgaagccacggctgcggaggta
ccggggaactcgggctaggacacagatgatgcagggttcggtccagtgga
gctcagaggatggacctgggcccttgaaaaaccctattgaagagctaaga
caaagctttgggggtagacactcaggttgggtaattgcgggggtgactga
aatcaaagccttagagggattaagaaacatcaggtaactttgtttccttc
tgtccccctgcagctccacgtggttcactatgactcccagtcctacagca
gcttgagtgaggcagctcagaagccacagggcctggctgtcctaggcatc
ctcattgaggtcagcatcccccagcccctctcaggtctctctctgatcct
ttattctaatccctcaggcctctcggaagtgtaccccagcactcactcca
aacgtgtgtgtctattgcaccattgcctttgcaggtgggcgagactggag
aatcagcttatgatcacattctggagtcgtctacttgaaatagatacaag
gtgagcctaaaaacctacagtaaggattcactgcaggaacgttcaggccc
tgacttgagagcctgggagagggcgggagagcagtgattctgctcaaagg
atctgttcagagcttgaccctcgctccgtctccggatcgagacctctggc
tccttcagcggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95553576_95554777
seq2: B6Ng01-087O09.b_46_1253

seq1  GAATTCCTAGTCCTCTGCCTCCATTTCCCAAGTGTGGGGATTACAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTCCTCTGCCTCCATTTCCCAAGTGTGGGGATTACAGGCAA  50

seq1  CATGCCTGCTTTGAACAAACTGACAAATTATAGCCTTTCCCTTAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCTTTGAACAAACTGACAAATTATAGCCTTTCCCTTAAACACT  100

seq1  CTTGTCTGAGCTAGCTAGCTTTGTTTGCATGGTGTGGCCTTACCAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGAGCTAGCTAGCTTTGTTTGCATGGTGTGGCCTTACCAGTGCT  150

seq1  ACAGGAATAGTCAGTCTTATTTTATAGACACAAACAGCAGGTAAGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATAGTCAGTCTTATTTTATAGACACAAACAGCAGGTAAGGAGAT  200

seq1  CTGGCCAAAGCTGCATACCTCATGAGTAGCAGAATCAGACTGCAGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAAGCTGCATACCTCATGAGTAGCAGAATCAGACTGCAGATGTT  250

seq1  GCGTTTACAGGAGGTTTTTTCTACACATACATCTGTCTCTTGCTAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTACAGGAGGTTTTTTCTACACATACATCTGTCTCTTGCTAGCTTC  300

seq1  CATCTCATCCAGTAACACAAAGTCTAGGAACAGCACTTTCAGGGAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCCAGTAACACAAAGTCTAGGAACAGCACTTTCAGGGAAGACA  350

seq1  CGACCATGCCTTGGTCACAGCTTTCCCTAGTATCTGTCAAACAGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCATGCCTTGGTCACAGCTTTCCCTAGTATCTGTCAAACAGTGTCAC  400

seq1  CAACCCCACATGACCCTGTCTAGCCTGCTCACGGTCTCTTGCTTGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCACATGACCCTGTCTAGCCTGCTCACGGTCTCTTGCTTGATTTC  450

seq1  CCTTAATGCAGATCCAGACTACAGAGTCTAAGTTGAATTCTGGACTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGCAGATCCAGACTACAGAGTCTAAGTTGAATTCTGGACTCTGG  500

seq1  CAGGGGCTCCAGTACCTCCAATGAAACCTTGGGATTTCAGAATGGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTCCAGTACCTCCAATGAAACCTTGGGATTTCAGAATGGAGAAA  550

seq1  ACCCTCTTTTCTCCTAGATCTCCTCATCAGCCATGAGGACAGAGAAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTTTCTCCTAGATCTCCTCATCAGCCATGAGGACAGAGAAGGGG  600

seq1  TAGGAGAGAAAGGACCACCCTCTCCATTCTCTAGCTTTCTCCTGGGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGAAAGGACCACCCTCTCCATTCTCTAGCTTTCTCCTGGGATAA  650

seq1  TGGGAGTACCACCCTAACCCTAACCCCACTACTCACCGTGAGCAGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTACCACCCTAACCCTAACCCCACTACTCACCGTGAGCAGCTTCA  700

seq1  GTGCTCCAATCTGTCCAGTGTGCCGAAGATGGGGGCCTCGGCACAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAATCTGTCCAGTGTGCCGAAGATGGGGGCCTCGGCACAGGTCA  750

seq1  ACTGACATGCCACACCTGAGAGAAGGAGGTGAGCCAGTG-AACAGACATG  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTGACATGCCACACCTGAGAGAAGGAGGTGAGCCAGTGAAACAGACATG  800

seq1  -CCAGATCTGAGAGAAGGAGGTACCCAGGCTCTCCTGTTT-CCCTTTTTT  847
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAGATCTGAGAGAAGGAGGTACCCAGGCTCTCCTGTTTCCCCTTTTTT  850

seq1  CCTCCCTTTCAGGGCTTCAGCTGACAGAAGAGGTGTTGAGGAGAGAACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTCAGGGCTTCAGCTGACAGAAGAGGTGTTGAGGAGAGAACTG  900

seq1  TCTTGCTGACAGAGCAATGGC-AAACAAAAACAAACCCCTCCTCCCATTT  946
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGCTGACAGAGCAATGGCAAAACAAAAACAAACCCCTCCTCCCATTT  950

seq1  C--TTTTTCTGGAGCAGTACGGTTCATCTGCC-GCCACCCTT--CCTTTA  991
      |  ||||||||||||||||||||||||||||| |||||||||  | ||||
seq2  CCTTTTTTCTGGAGCAGTACGGTTCATCTGCCGGCCACCCTTTCCTTTTA  1000

seq1  CCCCAGGTCTGGCCTCCTCAGAGCGCCCCTGCGTTC-TTCCCTCTTGACA  1040
      |||||||||||||||| ||||||||||||||||||| |||| ||||||||
seq2  CCCCAGGTCTGGCCTCTTCAGAGCGCCCCTGCGTTCTTTCCTTCTTGACA  1050

seq1  AGGCTCACCCATACACTGTTGCC-GTTGGGCCTGTCACTTTCT-CCTCGA  1088
      | ||||||||||||||||||||| ||||| | | ||||||||| ||||||
seq2  A-GCTCACCCATACACTGTTGCCGGTTGGCCTTTTCACTTTCTCCCTCGA  1099

seq1  TCAGATGAAG-CTTAAAGTGGTTGTCCTGGAAGAAGGCAGACAGGGACCA  1137
      | |||||||| |||||||| |||||||||||| ||||||||   ||| ||
seq2  TTAGATGAAGCCTTAAAGT-GTTGTCCTGGAA-AAGGCAGAACAGGA-CA  1146

seq1  TGAATCCGCT-AGGA-CGCCCTGGGCATCACCCTTTCCTTCAAGCCTTAC  1185
      ||||  |||| |||| |||| ||||||  ||||||| |||| |||  |||
seq2  TGAAATCGCTAAGGACCGCCTTGGGCAATACCCTTT-CTTC-AGC--TAC  1192

seq1  CAAGTTCCTCTCACACA  1202
      | |||||||||| ||||
seq2  CCAGTTCCTCTC-CACA  1208

seq1: chr3_95703477_95704613
seq2: B6Ng01-087O09.g_69_1182 (reverse)

seq1  TCTCACGCTGAAGGGAGGCACAGAGGTCTTCTGATCTGGGGAGGACGGAG  50
      |||| ||||||| ||||   |||||||||   |||| ||    |||||||
seq2  TCTC-CGCTGAA-GGAG--CCAGAGGTCT--CGATCCGG---AGACGGAG  41

seq1  CGAGGGTCAGGCTTCCTGGACAGGATTCCTCTGAGCAGAATTCACTGCTT  100
      ||||||||| |||  ||| ||||   |||| ||||||||| |||||||| 
seq2  CGAGGGTCAAGCT--CTGAACAG--ATCCTTTGAGCAGAA-TCACTGCTC  86

seq1  TCTCCCCGCCCTCTCCCAAGCCTCTCAGGTCAGGGCTTGAACGTTTCCTT  150
      |   ||||||||||||| || |||||| |||||||| ||||||||  | |
seq2  T---CCCGCCCTCTCCC-AGGCTCTCAAGTCAGGGCCTGAACGTT--CCT  130

seq1  GCAGTTGAATTCTTACTGTAGGTTTTTAGGGCTCACCTTTGTATCTTATT  200
      |||| ||||| ||||||||||||||||| |||||||| ||||||| ||||
seq2  GCAG-TGAATCCTTACTGTAGGTTTTTA-GGCTCACC-TTGTATC-TATT  176

seq1  TCATGTAGACGACT-CAGAATGTGATCATAAGCTGGATTCT-CAGTCTCG  248
      ||| |||||||||| ||||||||||||||||||| |||||| ||||||||
seq2  TCAAGTAGACGACTCCAGAATGTGATCATAAGCT-GATTCTCCAGTCTCG  225

seq1  CCCACCTGCAAAGGCAATGTGCCAATAGACACACACGTTTGGAGTGAGTG  298
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CCCACCTGCAAAGGCAATGGTGCAATAGACACACACGTTTGGAGTGAGTG  275

seq1  CTGGGGTACACTTCCGAGAGGCCTGA-GGATTAGAATAAAGGATCAGAGA  347
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGGGTACACTTCCGAGAGGCCTGAGGGATTAGAATAAAGGATCAGAGA  325

seq1  GAGACCTGAGAGGGGCTGGGGGATGCTGACCTCAATGAGGATGCCTAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGAGAGGGGCTGGGGGATGCTGACCTCAATGAGGATGCCTAGGA  375

seq1  CAGCCAGGCCCTGTGGCTTCTGAGCTGCCTCACTCAAGCTGCTGTAGGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCCCTGTGGCTTCTGAGCTGCCTCACTCAAGCTGCTGTAGGAC  425

seq1  TGGGAGTCATAGTGAACCACGTGGAGCTGCAGGGGGACAGAAGGAAACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCATAGTGAACCACGTGGAGCTGCAGGGGGACAGAAGGAAACAA  475

seq1  AGTTACCTGATGTTTCTTAATCCCTCTAAGGCTTTGATTTCAGTCACCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTGATGTTTCTTAATCCCTCTAAGGCTTTGATTTCAGTCACCCC  525

seq1  CGCAATTACCCAACCTGAGTGTCTACCCCCAAAGCTTTGTCTTAGCTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATTACCCAACCTGAGTGTCTACCCCCAAAGCTTTGTCTTAGCTCTT  575

seq1  CAATAGGGTTTTTCAAGGGCCCAGGTCCATCCTCTGAGCTCCACTGGACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGGTTTTTCAAGGGCCCAGGTCCATCCTCTGAGCTCCACTGGACC  625

seq1  GAACCCTGCATCATCTGTGTCCTAGCCCGAGTTCCCCGGTACCTCCGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGCATCATCTGTGTCCTAGCCCGAGTTCCCCGGTACCTCCGCAG  675

seq1  CCGTGGCTTCACTGTTGATCTGGTGCTCTGATCCCTCGAGGGATCCTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGCTTCACTGTTGATCTGGTGCTCTGATCCCTCGAGGGATCCTCTC  725

seq1  TGACCCCAGTGCAGGTGGAGCTGGGCTGCTGTGTATTTTCGGGGCAGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGTGCAGGTGGAGCTGGGCTGCTGTGTATTTTCGGGGCAGTCC  775

seq1  ACCCAGGTGCAGGGTTGGGGGCAGGGAAAGCTGCACTGTGGGGAAAGAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTGCAGGGTTGGGGGCAGGGAAAGCTGCACTGTGGGGAAAGAGC  825

seq1  AGGCTAGGATGGACAGTTCCCGCCCCAGCTTGCCACCACTTGGGACATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGATGGACAGTTCCCGCCCCAGCTTGCCACCACTTGGGACATAG  875

seq1  GGTTCTCCTCTTCCTTCTTCCCCCCAGAATTGCCTGGTTCTCTCTAGCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCTCTTCCTTCTTCCCCCCAGAATTGCCTGGTTCTCTCTAGCAA  925

seq1  AGGAACCTCTCTGCTAATGATTAAGTCAGTGCTATGACACTGCTTGTACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTCTCTGCTAATGATTAAGTCAGTGCTATGACACTGCTTGTACA  975

seq1  CTGAGCTTGATCATGGACGTCTGATCCCACCTTAGCTGCAGGAGCCTGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGATCATGGACGTCTGATCCCACCTTAGCTGCAGGAGCCTGAA  1025

seq1  CCTCAATGTTTTATGGTTTTTGTTTTTTTGGTTTTTTTTGAGACAGGGAT  1097
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCAATGTTTTATGGTTTTTG-TTTTTTGGTTTTTTTTGAGACAGGGAT  1074

seq1  CCTCTGTACACAGACTGTAGCCCTGGCTGTCCTGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTACACAGACTGTAGCCCTGGCTGTCCTGGAATTC  1114