BAC Information

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BAC

Clone NameB6Ng01-088G13
Chromosome3 (Build37)
Map Location 18,539,553 - 18,697,144
singlet/doubletdoublet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G13.bB6Ng01-088G13.g
ACCDH901267DH901268
length1,1061,176
definitionDH901267|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G13, 5' end.DH901268|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,696,032 - 18,697,144)(18,539,553 - 18,540,767)
sequence
gaattccatgagcctactggtaaggggttttgtttgcataccctacctgt
gaactgcattttaaaatgcattttgagctttgagctaataatgtgaatga
cattcagcgagattgccaaatgctggtaatttagtctcattttcacatta
atgtgggcccacctgtgatgaattggaagctaaataagcacatcagtttt
aattagatatttcagagactggatctcgccaaacagcagcattcattctt
atctatttaatagtggaagaatttagcacattcttcagagaagttcacac
accccgtttgtccttcccatttgattttcagatactcctttcaggctctg
ggttaccagatgcctgtgtttgtgtgaatagagaaggagaggatcacatt
aagtcttcaaggagaaccagtcagtcaattagtagtgtgttttaaatcaa
gaagcatggattttggagcctttgaaagataaattccatcactggttgtg
tggaaaatgaataggggtttaacacccatgtttctcaaacattgatctga
tttacatagaccaccaagatatagaatagatcttggatggccttctggca
gaggaggctggtttcaaaattgatatggcttctattcttcacgaaggcag
aatgttttctgatgcactagggtctgggtagaactaatctaatgaaagaa
actgtaaatgtagggatatatttgaattaagataaggaatgaatagacaa
ccaggcttaaaaatcacttatgttttcaaagttgtgtatagttgtgttct
ttccattagcccaaaaccaactcctctctgcctttcctgtaagtacttct
acctggttggactgtgaattctggagggagacagtgggtgtccgttgata
caactctgttctaagtctcagcctaggggctgttccatgaaaggaaggta
atgtagactacagggagccttagcttactggggactcctgagtgactaca
tggagctgggatcgatgcaaaagcaagaggaattattgtccagtgcactg
gggtggttccaggactcgaaggaaaatagcaactcccagaatccattggt
gagttt
gaattcattttcttcaggccacttaccctaaagcacataccaccatctgg
agggtgtggacaccaagataagaactcagaacacagtctctgggttgtcc
tctgtcccatagctgggccctccacagagaccatgttcaggtgtgtgctg
cttctttctgtctggatgtgtggttctccccaggatgacacttgggcaat
tttgaacagtatgataacaagatgacagggaagcctctctggtgtcccaa
ggtttgaagacggaggtggtggttccggagtctctatacatcaggagaga
gaaaagagtttcctcttacaggtgagcatcaacatctgtgacactgaaag
ctcatcttgtaacattaaatctcaggtcaatggtccctctggacatgtca
cccttggttctaataggatcctaacaaagagatttgaaaatcaaagtatg
taaggatagaaggatcaataacagggcatcattaagaatagtgcccatag
tcaataaacagatctgttaaattagaattactaaaatcaatgagtcccac
ccttgccacaatggcagtagcagcctacctcgaggacagagatcatcaat
ggtggcagtcctatcagaaccctgttttcacaagagcttgagcatccagt
ttaagtcacggtattctccccaaattgagatctgataagaaaacaggtat
ttttcctatccacacacagccattgtgagaacattcagctgctttttaaa
tcaagtggtagcactgtaagaaaaagcacgaggtagttaaaaatttgaag
aatatgtcaattggtaaaattagataaaaagttacgctgtgttctgccct
acatttggactatcacaagtgaggcaaacttttctaggcacactgctgag
actgccaatttaacaagctgttctgtgctgcaagggacatatttatggac
atactttcacgagacgtacctagtgctacaagctgtgcttgtactgaaga
gcagaagatcagaacgatgatttaaaaaaaaaaaagaaagatttccacat
gggttctattaaaatcaagcagtattctgcattttcaggcaaaattttaa
atatgacaggtgttgcttgtctaagaaaacaccgatgtaagacaaattga
ccaccatttagccagcgtgtatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18696032_18697144
seq2: B6Ng01-088G13.b_44_1149 (reverse)

seq1  AAACTCACCAAATGGGTTCTGGGAGTTGCTATCTCTCCTTCGGGT-CTGG  49
      ||||||||| ||||| |||||||||||||||| | ||||||| || ||||
seq2  AAACTCACC-AATGGATTCTGGGAGTTGCTAT-TTTCCTTCGAGTCCTGG  48

seq1  GACCACCCCAGTGCACTGGAACAATAAATTCCTCTTGCTTTTTGCATCGA  99
       |||||||||||||||||| ||||| |||||||||||| |||||||||||
seq2  AACCACCCCAGTGCACTGG-ACAAT-AATTCCTCTTGC-TTTTGCATCGA  95

seq1  TCCCAGCTCCATGTAGTTCACTCAGGGAGTCCCCAGTAAGCTAAGGCTCC  149
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TCCCAGCTCCATGTAG-TCACTCA-GGAGTCCCCAGTAAGCTAAGGCTCC  143

seq1  CTGTAGTCTTACATTACCTTCCTTTCATGGAACAGCCCCTAGGCTGAGAC  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTC-TACATTACCTTCCTTTCATGGAACAGCCCCTAGGCTGAGAC  192

seq1  TTAGAACAGAGTTGTATCAACGGACACCCACTGTCTCCCTCCAGAATTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGAGTTGTATCAACGGACACCCACTGTCTCCCTCCAGAATTCA  242

seq1  CAGTCCAACCAGGTAGAAGTACTTACAGGAAAGGCAGAGAGGAGTTGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAACCAGGTAGAAGTACTTACAGGAAAGGCAGAGAGGAGTTGGTT  292

seq1  TTGGGCTAATGGAAAGAACACAACTATACACAACTTTGAAAACATAAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAATGGAAAGAACACAACTATACACAACTTTGAAAACATAAGTG  342

seq1  ATTTTTAAGCCTGGTTGTCTATTCATTCCTTATCTTAATTCAAATATATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGCCTGGTTGTCTATTCATTCCTTATCTTAATTCAAATATATC  392

seq1  CCTACATTTACAGTTTCTTTCATTAGATTAGTTCTACCCAGACCCTAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTTACAGTTTCTTTCATTAGATTAGTTCTACCCAGACCCTAGTG  442

seq1  CATCAGAAAACATTCTGCCTTCGTGAAGAATAGAAGCCATATCAATTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAAACATTCTGCCTTCGTGAAGAATAGAAGCCATATCAATTTTG  492

seq1  AAACCAGCCTCCTCTGCCAGAAGGCCATCCAAGATCTATTCTATATCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCTCCTCTGCCAGAAGGCCATCCAAGATCTATTCTATATCTTG  542

seq1  GTGGTCTATGTAAATCAGATCAATGTTTGAGAAACATGGGTGTTAAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTATGTAAATCAGATCAATGTTTGAGAAACATGGGTGTTAAACCC  592

seq1  CTATTCATTTTCCACACAACCAGTGATGGAATTTATCTTTCAAAGGCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTTTCCACACAACCAGTGATGGAATTTATCTTTCAAAGGCTCC  642

seq1  AAAATCCATGCTTCTTGATTTAAAACACACTACTAATTGACTGACTGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATGCTTCTTGATTTAAAACACACTACTAATTGACTGACTGGTT  692

seq1  CTCCTTGAAGACTTAATGTGATCCTCTCCTTCTCTATTCACACAAACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAAGACTTAATGTGATCCTCTCCTTCTCTATTCACACAAACACA  742

seq1  GGCATCTGGTAACCCAGAGCCTGAAAGGAGTATCTGAAAATCAAATGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGGTAACCCAGAGCCTGAAAGGAGTATCTGAAAATCAAATGGGA  792

seq1  AGGACAAACGGGGTGTGTGAACTTCTCTGAAGAATGTGCTAAATTCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAACGGGGTGTGTGAACTTCTCTGAAGAATGTGCTAAATTCTTCC  842

seq1  ACTATTAAATAGATAAGAATGAATGCTGCTGTTTGGCGAGATCCAGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAATAGATAAGAATGAATGCTGCTGTTTGGCGAGATCCAGTCTC  892

seq1  TGAAATATCTAATTAAAACTGATGTGCTTATTTAGCTTCCAATTCATCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCTAATTAAAACTGATGTGCTTATTTAGCTTCCAATTCATCAC  942

seq1  AGGTGGGCCCACATTAATGTGAAAATGAGACTAAATTACCAGCATTTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCCCACATTAATGTGAAAATGAGACTAAATTACCAGCATTTGGC  992

seq1  AATCTCGCTGAATGTCATTCACATTATTAGCTCAAAGCTCAAAATGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCGCTGAATGTCATTCACATTATTAGCTCAAAGCTCAAAATGCATT  1042

seq1  TTAAAATGCAGTTCACAGGTAGGGTATGCAAACAAAACCCCTTACCAGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCAGTTCACAGGTAGGGTATGCAAACAAAACCCCTTACCAGTA  1092

seq1  GGCTCATGGAATTC  1113
      ||||||||||||||
seq2  GGCTCATGGAATTC  1106

seq1: chr3_18539553_18540767
seq2: B6Ng01-088G13.g_68_1243

seq1  GAATTCATTTTCTTCAGGCCACTTACCCTAAAGCACATACCACCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTTCAGGCCACTTACCCTAAAGCACATACCACCATCTGG  50

seq1  AGGGTGTGGACACCAAGATAAGAACTCAGAACACAGTCTCTGGGTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGGACACCAAGATAAGAACTCAGAACACAGTCTCTGGGTTGTCC  100

seq1  TCTGTCCCATAGCTGGGCCCTCCACAGAGACCATGTTCAGGTGTGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCATAGCTGGGCCCTCCACAGAGACCATGTTCAGGTGTGTGCTG  150

seq1  CTTCTTTCTGTCTGGATGTGTGGTTCTCCCCAGGATGACACTTGGGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTGTCTGGATGTGTGGTTCTCCCCAGGATGACACTTGGGCAAT  200

seq1  TTTGAACAGTATGATAACAAGATGACAGGGAAGCCTCTCTGGTGTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGTATGATAACAAGATGACAGGGAAGCCTCTCTGGTGTCCCAA  250

seq1  GGTTTGAAGACGGAGGTGGTGGTTCCGGAGTCTCTATACATCAGGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAAGACGGAGGTGGTGGTTCCGGAGTCTCTATACATCAGGAGAGA  300

seq1  GAAAAGAGTTTCCTCTTACAGGTGAGCATCAACATCTGTGACACTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTTTCCTCTTACAGGTGAGCATCAACATCTGTGACACTGAAAG  350

seq1  CTCATCTTGTAACATTAAATCTCAGGTCAATGGTCCCTCTGGACATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTGTAACATTAAATCTCAGGTCAATGGTCCCTCTGGACATGTCA  400

seq1  CCCTTGGTTCTAATAGGATCCTAACAAAGAGATTTGAAAATCAAAGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTTCTAATAGGATCCTAACAAAGAGATTTGAAAATCAAAGTATG  450

seq1  TAAGGATAGAAGGATCAATAACAGGGCATCATTAAGAATAGTGCCCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAGAAGGATCAATAACAGGGCATCATTAAGAATAGTGCCCATAG  500

seq1  TCAATAAACAGATCTGTTAAATTAGAATTACTAAAATCAATGAGTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAACAGATCTGTTAAATTAGAATTACTAAAATCAATGAGTCCCAC  550

seq1  CCTTGCCACAATGGCAGTAGCAGCCTACCTCGAGGACAGAGATCATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCACAATGGCAGTAGCAGCCTACCTCGAGGACAGAGATCATCAAT  600

seq1  GGTGGCAGTCCTATCAGAACCCTGTTTTCACAAGAGCTTGAGCATCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGTCCTATCAGAACCCTGTTTTCACAAGAGCTTGAGCATCCAGT  650

seq1  TTAAGTCACGGTATTCTCCCCAAATTGAGATCTGATAAGAAAACAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCACGGTATTCTCCCCAAATTGAGATCTGATAAGAAAACAGGTAT  700

seq1  TTTTCCTATCCACACACAGCCATTGTGAGAACATTCAGCTGCTTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATCCACACACAGCCATTGTGAGAACATTCAGCTGCTTTTTAAA  750

seq1  TCAAGTGGTAGCACTGTAAGAAAAAGGCACGAGGTAGTTAAAAATTTGAA  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAGTGGTAGCACTGTAAGAAAAA-GCACGAGGTAGTTAAAAATTTGAA  799

seq1  GAATATGTCAATTGGTAAAATTAGATAAAAAGTTACGCTGTGTTCTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTCAATTGGTAAAATTAGATAAAAAGTTACGCTGTGTTCTGCCC  849

seq1  TACATTTGGACTATCACAAGTGAGGCAAACTTTTCTAGGCACACTGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGACTATCACAAGTGAGGCAAACTTTTCTAGGCACACTGCTGA  899

seq1  GGACTGCCAATTTAACAAGCTGTTCTGTGCTGCAAGGGACATATTTATGG  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GACTGCCAATTTAACAAGCTGTTCTGTGCTGCAAGGGACATATTTATGG  948

seq1  ACATACTTTCAACGAGACGTACCTAGTGCTACCAAGCTGTGC-TGTACTG  999
      |||||||||| |||||||||||||||||||| |||||||||| |||||||
seq2  ACATACTTTC-ACGAGACGTACCTAGTGCTA-CAAGCTGTGCTTGTACTG  996

seq1  AAGAGCAGAAAGAATCAGAACGATGGATTTAAAAAAAAAAAAAAAGAAAG  1049
      ||||||||||   ||||||||||| |||||   |||||||||||||||| 
seq2  AAGAGCAGAA--GATCAGAACGAT-GATTT---AAAAAAAAAAAAGAAA-  1039

seq1  GATTTCACACATGGGTCCTATTAAAATCAGAGCAAGTATTCTGCATTTTA  1099
      |||||| ||||||||| |||||||||||| ||| ||||||||||||||| 
seq2  GATTTC-CACATGGGTTCTATTAAAATCA-AGC-AGTATTCTGCATTTT-  1085

seq1  CAGGCAAAAATATTTAAAATAATGACAGGGTTGTTGCATGATCTAAGAAG  1149
      ||||||||   |||| |||| ||||||||  |||||| || |||   |||
seq2  CAGGCAAA---ATTTTAAAT-ATGACAGG--TGTTGCTTG-TCT---AAG  1125

seq1  AAAACACCCGGGAAATGTAAAAGACAAGATTGACACAGCATGTTTAGCCC  1199
      ||||||||      ||||  ||||||| |||||| || ||  ||||||| 
seq2  AAAACACC-----GATGT--AAGACAA-ATTGAC-CACCA--TTTAGCCA  1164

seq1  AGGCTGTTGTATGACA  1215
        |    |||||||||
seq2  GCG----TGTATGACA  1176