BAC Information

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BAC

Clone NameB6Ng01-088I13
Chromosome3 (Build37)
Map Location 156,041,714 - 156,203,887
singlet/doubletdoublet
Overlap genenone
Upstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
Downstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818, Zranb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I13.bB6Ng01-088I13.g
ACCDH901359DH901360
length1,2331,004
definitionDH901359|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I13, 5' end.DH901360|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,041,714 - 156,042,951)(156,202,878 - 156,203,887)
sequence
gaattcttaaacaaagctcaaccctgaatctgtccttttgcatttttctt
ttgttttctgccacttaccttgctgttggcctaaatcatgttcaccattc
ttagttttcaatcagtatattcacttttggttttaattgtagttcaattt
ggctttaattctctacactttgctgctgtgtttttgttgttgtttttgga
ttccaagaataaggatcagtgttgtttctaaattcctgttcttgtaaaca
acaatgcattgagtattctcacagattttcaggttttcaagcatgtgagg
cagaattctacattctgtggtatttgccccattgtgatccctccctgaat
atgttacattgcccagcagatagctttgcacatgtaaatgagaagcccta
aaatagaaaggtattatcatattgcttcagtggggttcgcataatggcag
gtattcatagaaggatggtgatttctcctgatggcaatataagagaaatt
cgatgtggtatttgaagcagaagatttcaacgttttgttgatttaaaggc
aaagtggcaagagaaaagggaatttagtcagaagactccaagtggctgac
ttagcagaacagcttgtgtgaggctagacagggagaacagggagcaaagc
atcagctgagggcctgatctcatcattcatttgactctgcattcgtgggg
acctccacaaaaatcctagctaaatcatgttgtatctgagcacacatgca
tttgataacataaacttgtgctttggcttattggctgattagatttttaa
aatttaattcgtattaactgcactgacaaaccaagactgagcatgtcagt
ccttgtttacatgtttaccctgatgatgcttaaaggtggtgtgagtatag
cttttacctcaaattcttattatgtctctttagaaagaaagttcaaaact
tgtaacatctgaaaattcattactatcatataaagcatctaccatgcaac
agcacacagggcttcctacttccattccaacagcaattagttcccatcaa
tcaacctctctcatccctccttcccctctttccttcaacttctgagaagc
ttatccaattattcaaatttttaaaaatggaattttttaggtccttctct
gagtaagaccattaggaaaccggcatattatatgtgtcattatgtacaat
tacaaagtaatttcatatttgattcaaatcttc
gaattcactttgccatgcatgaggaaaagacactgtgtcccagagcagcc
ttgtaataatggattaattctcctgtatgaccccagttgggtctattctc
atccccttgccaagggacaactgaggcatggagagagaccttgcaactat
ggttacatatactatgaatttagtgcttatatgtgtgtgctgtctgcttg
aacacctttcctgtgaaacttcttgctacagagaagagtcccccctggca
cacagaaaatagtaaagagagtttgtgattcataagtattttctttgtat
ttgacatctgtggtggtttgcatgggaatgatcccacagactcatgggtt
tgaatgcttggttcccagttggtggaactttttcagaaggatcagaaggt
atggccttgttggaggtgatatgtcggaggggtgctggaggtttcaaaaa
ccaatgtcattcccagatagctctttctgaattaggtatgtggattactc
tgtgagctctccgcttctgttccagcaccacgccatgcttcccactaaga
tgctcatggactctgaccctcaggtaagaagtcactgagttctccttcat
cttgaggcatattggcttgagaatttgttgtctgaaactcagaactccaa
gtagctacgtttaccaggtatatcctcccaaggctgaactacaaagatgt
gtacctatgtcatttccccagtctgttttgctaggctagtttcttatata
cattttaatttcctgtcatagactaggttggctcagtggttaaggacgag
tactgcaatttcagaggataagagtctgtttcccaaaacccacgccggtt
ggctcataactgcctagactctatacccagtataagaagtttggctcttg
tggctctgtgggcattaacactcatgtgtatgtacacatagagaaattaa
aataagacaatctttaaaatcactaggcttttatatataattaatatatt
atat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156041714_156042951
seq2: B6Ng01-088I13.b_46_1278

seq1  GAATTCTTAAACAAAGCTCAACCCTGAATCTGTCCTTTTGCATTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACAAAGCTCAACCCTGAATCTGTCCTTTTGCATTTTTCTT  50

seq1  TTGTTTTCTGCCACTTACCTTGCTGTTGGCCTAAATCATGTTCACCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGCCACTTACCTTGCTGTTGGCCTAAATCATGTTCACCATTC  100

seq1  TTAGTTTTCAATCAGTATATTCACTTTTGGTTTTAATTGTAGTTCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCAATCAGTATATTCACTTTTGGTTTTAATTGTAGTTCAATTT  150

seq1  GGCTTTAATTCTCTACACTTTGCTGCTGTGTTTTTGTTGTTGTTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAATTCTCTACACTTTGCTGCTGTGTTTTTGTTGTTGTTTTTGGA  200

seq1  TTCCAAGAATAAGGATCAGTGTTGTTTCTAAATTCCTGTTCTTGTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAATAAGGATCAGTGTTGTTTCTAAATTCCTGTTCTTGTAAACA  250

seq1  ACAATGCATTGAGTATTCTCACAGATTTTCAGGTTTTCAAGCATGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATTGAGTATTCTCACAGATTTTCAGGTTTTCAAGCATGTGAGG  300

seq1  CAGAATTCTACATTCTGTGGTATTTGCCCCATTGTGATCCCTCCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTACATTCTGTGGTATTTGCCCCATTGTGATCCCTCCCTGAAT  350

seq1  ATGTTACATTGCCCAGCAGATAGCTTTGCACATGTAAATGAGAAGCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATTGCCCAGCAGATAGCTTTGCACATGTAAATGAGAAGCCCTA  400

seq1  AAATAGAAAGGTATTATCATATTGCTTCAGTGGGGTTCGCATAATGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGGTATTATCATATTGCTTCAGTGGGGTTCGCATAATGGCAG  450

seq1  GTATTCATAGAAGGATGGTGATTTCTCCTGATGGCAATATAAGAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATAGAAGGATGGTGATTTCTCCTGATGGCAATATAAGAGAAATT  500

seq1  CGATGTGGTATTTGAAGCAGAAGATTTCAACGTTTTGTTGATTTAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGGTATTTGAAGCAGAAGATTTCAACGTTTTGTTGATTTAAAGGC  550

seq1  AAAGTGGCAAGAGAAAAGGGAATTTAGTCAGAAGACTCCAAGTGGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCAAGAGAAAAGGGAATTTAGTCAGAAGACTCCAAGTGGCTGAC  600

seq1  TTAGCAGAACAGCTTGTGTGAGGCTAGACAGGGAGAACAGGGAGCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAACAGCTTGTGTGAGGCTAGACAGGGAGAACAGGGAGCAAAGC  650

seq1  ATCAGCTGAGGGCCTGATCTCATCATTCATTTGACTCTGCATTCGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGAGGGCCTGATCTCATCATTCATTTGACTCTGCATTCGTGGGG  700

seq1  ACCTCCACAAAAATCCTAGCTAAATCATGTTGTATCTGAGCACACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAAAAATCCTAGCTAAATCATGTTGTATCTGAGCACACATGCA  750

seq1  TTTGATAACATAAACTTGTGCTTTGGCTTATTGGCTGATTAGATTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACATAAACTTGTGCTTTGGCTTATTGGCTGATTAGATTTTTAA  800

seq1  AATTTAATTCGTATTAACTGCACTGACAAACCAAGACTGAGCATGTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTCGTATTAACTGCACTGACAAACCAAGACTGAGCATGTCAGT  850

seq1  CCTTGTTTACATGTTTACCCTGATGATGCTT-AAGGTGGTGTGAGTATAG  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTTGTTTACATGTTTACCCTGATGATGCTTAAAGGTGGTGTGAGTATAG  900

seq1  CTTTTACCTCAAATTCTTATTATGTCTCTTTAGAAAGAAAGTTCAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTCAAATTCTTATTATGTCTCTTTAGAAAGAAAGTTCAAAACT  950

seq1  TGTAACATCTGAAAAATTCATTACTATCATATAAAGCATCTACCATGCAA  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATCTG-AAAATTCATTACTATCATATAAAGCATCTACCATGCAA  999

seq1  CAGCACACAGGGCTTCCTACTTCCA-TCCAACAGCAATTAGTTCCCATCA  1048
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGCACACAGGGCTTCCTACTTCCATTCCAACAGCAATTAGTTCCCATCA  1049

seq1  ATCAACCTCTCTCCATCCCTCCCTCCCACTCTTCCTTCCAACTCCTGAGA  1098
      |||||||||||| ||||||||| |||| ||||| | | ||||| ||||||
seq2  ATCAACCTCTCT-CATCCCTCCTTCCC-CTCTTTCCTTCAACTTCTGAGA  1097

seq1  GGCTTATCCAATTA-TCAAATTTTATAACATGAAATTTTTAGGTTTCTTC  1147
       ||||||||||||| |||||||||  || ||| |||||||  | | ||||
seq2  AGCTTATCCAATTATTCAAATTTTTAAAAATGGAATTTTTTAGGTCCTTC  1147

seq1  TCTGAGTCAGATCACATAGGGAACCTG-TCATTATATGTGTCA-TATTTA  1195
      ||||||| ||| ||  |||| |||| |   ||||||||||||| ||| ||
seq2  TCTGAGTAAGACCA-TTAGGAAACCGGCATATTATATGTGTCATTATGTA  1196

seq1  TCATATCACAAAGTAATTCCATTATTTTTGTATTCAAATCTTC  1238
       || || ||||||||||| || |||||    ||||||||||||
seq2  -CA-ATTACAAAGTAATTTCA-TATTT---GATTCAAATCTTC  1233

seq1: chr3_156202878_156203887
seq2: B6Ng01-088I13.g_70_1073 (reverse)

seq1  ATATATATATA-TATATATAT-TAAATGCCTAGTTGATTTTTAAAGATTT  48
      ||||| ||||| ||  ||||| |||| |||||| ||| ||||||||| ||
seq2  ATATA-ATATATTAATTATATATAAAAGCCTAG-TGA-TTTTAAAGA-TT  46

seq1  GTCTTATTTTTAATTTTCTCTATGTGTACATACACATGAGTGTTAATGCC  98
      ||||||||||  | ||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTT--AATTTCTCTATGTGTACATACACATGAGTGTTAATGCC  94

seq1  CACAGAGCCCACAAGAGCCAAACTTCTTATACTGGGTATAGAGTTCTAGG  148
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  CACAGAG-CCACAAGAGCCAAACTTCTTATACTGGGTATAGAG-TCTAGG  142

seq1  CAGTTATGAGCCAACCGGCGTGGGTTTTGGGAAACAGACTCTTATCCTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGAGCCAACCGGCGTGGGTTTTGGGAAACAGACTCTTATCCTCT  192

seq1  GAAATTGCAGTACTCGTCCTTAACCACTGAGCCAACCTAGTCTATGACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCAGTACTCGTCCTTAACCACTGAGCCAACCTAGTCTATGACAG  242

seq1  GAAATTAAAATGTATATAAGAAACTAGCCTAGCAAAACAGACTGGGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAATGTATATAAGAAACTAGCCTAGCAAAACAGACTGGGGAAA  292

seq1  TGACATAGGTACACATCTTTGTAGTTCAGCCTTGGGAGGATATACCTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGGTACACATCTTTGTAGTTCAGCCTTGGGAGGATATACCTGGT  342

seq1  AAACGTAGCTACTTGGAGTTCTGAGTTTCAGACAACAAATTCTCAAGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAGCTACTTGGAGTTCTGAGTTTCAGACAACAAATTCTCAAGCCA  392

seq1  ATATGCCTCAAGATGAAGGAGAACTCAGTGACTTCTTACCTGAGGGTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCAAGATGAAGGAGAACTCAGTGACTTCTTACCTGAGGGTCAG  442

seq1  AGTCCATGAGCATCTTAGTGGGAAGCATGGCGTGGTGCTGGAACAGAAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAGCATCTTAGTGGGAAGCATGGCGTGGTGCTGGAACAGAAGC  492

seq1  GGAGAGCTCACAGAGTAATCCACATACCTAATTCAGAAAGAGCTATCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTCACAGAGTAATCCACATACCTAATTCAGAAAGAGCTATCTGG  542

seq1  GAATGACATTGGTTTTTGAAACCTCCAGCACCCCTCCGACATATCACCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACATTGGTTTTTGAAACCTCCAGCACCCCTCCGACATATCACCTC  592

seq1  CAACAAGGCCATACCTTCTGATCCTTCTGAAAAAGTTCCACCAACTGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCATACCTTCTGATCCTTCTGAAAAAGTTCCACCAACTGGGA  642

seq1  ACCAAGCATTCAAACCCATGAGTCTGTGGGATCATTCCCATGCAAACCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATTCAAACCCATGAGTCTGTGGGATCATTCCCATGCAAACCAC  692

seq1  CACAGATGTCAAATACAAAGAAAATACTTATGAATCACAAACTCTCTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGTCAAATACAAAGAAAATACTTATGAATCACAAACTCTCTTTA  742

seq1  CTATTTTCTGTGTGCCAGGGGGGACTCTTCTCTGTAGCAAGAAGTTTCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTGTGTGCCAGGGGGGACTCTTCTCTGTAGCAAGAAGTTTCAC  792

seq1  AGGAAAGGTGTTCAAGCAGACAGCACACACATATAAGCACTAAATTCATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGTTCAAGCAGACAGCACACACATATAAGCACTAAATTCATA  842

seq1  GTATATGTAACCATAGTTGCAAGGTCTCTCTCCATGCCTCAGTTGTCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTAACCATAGTTGCAAGGTCTCTCTCCATGCCTCAGTTGTCCCT  892

seq1  TGGCAAGGGGATGAGAATAGACCCAACTGGGGTCATACAGGAGAATTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGGGATGAGAATAGACCCAACTGGGGTCATACAGGAGAATTAAT  942

seq1  CCATTATTACAAGGCTGCTCTGGGACACAGTGTCTTTTCCTCATGCATGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTACAAGGCTGCTCTGGGACACAGTGTCTTTTCCTCATGCATGG  992

seq1  CAAAGTGAATTC  1010
      ||||||||||||
seq2  CAAAGTGAATTC  1004