BAC Information

Click to search

BAC

Clone NameB6Ng01-088J21
Chromosome3 (Build37)
Map Location 36,263,472 - 36,416,535
singlet/doubletdoublet
Overlap geneAnxa5, 1810062G17Rik
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J21.bB6Ng01-088J21.g
ACCDH901422DH901423
length1,019952
definitionDH901422|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J21, 5' end.DH901423|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,263,472 - 36,264,321)(36,415,585 - 36,416,535)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttatttggttc
tctgaagtctaacttcttgagatctttgtatatattggatattagccctc
tatcagatgtaggattggtaaagatcttctcccaatctgtaggttgctgt
tttgtcctattgacagtgtcctttgccttacagaagctttgcaattttat
gagatcccatttgtttatacttcatcttagagcctgggccattggtgttc
tgtagaacagaaattctattctgatataaacttttaatttataacagaag
catcctgacaaaagcaaaataagaataacacagcaaatggactatcatca
aagacacaaacataggtacgaaaatactaaaacaacactaggaaggcaaa
tccaatcaatagcctatcttcaagttagaattgccctagatctacagtga
gaactttgggattgaaaatctactgctacttatcacattagcaaaatgaa
gaaggtaagttatgtaatcatttctgagggcataagaaagcattcagtgt
aatacagtattatatgcctgataatttttagctcccaggaaatggtgtca
tcaatgtaataagaatatctaataaaccctggaacaaatctaacaaatgg
tgtgtcatagtttaggtttctatggctgttatgaaacattgtgaccaaaa
agctagttagggaggaaagggtttattcagcttacacttccacattgctg
ttcattatcaaaggaagccagggcaggatctcaaacagggcaggaacctg
aaggcaggagctgatgcaggtgccataaagagtgatgcttacttgcatgc
tccaaatgttttcctcagcttgatcttttttatttaatttttttaatatt
tttacatttttatttagtcttctctaatacaatacagcccaacgtagaat
ctactcctcccagtctccccctccccacagggctccccctaccccagatc
tacttttcctccaatttcc
gaattcagttataaacggtgagaattttgaacattttgaatggttaagcc
atttaaagagagtagggaacggggtttccccctctaaaccatatgatcta
gagacttttagaatcctagttatactgatgtagaaaaagtatcagcagag
ctctgtatatcaaaatagctctgggagctagtctgagctacttgttctta
tttaagctcgatccgtaattaaaactctaaaatcactagaattagtcggg
tatttgtattacatacaagcgcaagtgaagaattgagctcttgatgtagt
ggggtcttgttcattttgttttttcacttgaatcagttacacagattctt
ccaatatccgtttgctagtttgtttacataaataaataaggacccaggtt
aaatgtcccagtaaacaggggcttgaacaaattaggggtcttgttatgtc
tcatggaactcactctttatatgaggcgctgtttgtttttcagattctta
tgtgatctccgtggctccccaatagaaggaggaagcagggaagaaaacag
aatgtgcctgtctgagtccatcttccttctaaagagtttcccggggacca
ggactacgtcacgggccactgtcttttaacaatatggatgctgttgcctt
caatcaaaacccaagctctctagattaggacaaagaatcctgggtggaca
agatccagaagtctatgctctagtacaaagcacagttgtgcagaaagcag
tgttcaagatggaactcctggttcccacacagccccaccgatgtggctga
gcagagtgacgatgtctccctagttctcaagaaatatttgtcaggactgg
cttcctctctggtcagctgactcccctgtaccaggattttctaggcatgt
agcctggaagccttacatttgtgtgtgttgggggatctgggaggttgagg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36263472_36264321
seq2: B6Ng01-088J21.b_46_895

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTC  50

seq1  TCTGAAGTCTAACTTCTTGAGATCTTTGTATATATTGGATATTAGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCTAACTTCTTGAGATCTTTGTATATATTGGATATTAGCCCTC  100

seq1  TATCAGATGTAGGATTGGTAAAGATCTTCTCCCAATCTGTAGGTTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATGTAGGATTGGTAAAGATCTTCTCCCAATCTGTAGGTTGCTGT  150

seq1  TTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAT  200

seq1  GAGATCCCATTTGTTTATACTTCATCTTAGAGCCTGGGCCATTGGTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCATTTGTTTATACTTCATCTTAGAGCCTGGGCCATTGGTGTTC  250

seq1  TGTAGAACAGAAATTCTATTCTGATATAAACTTTTAATTTATAACAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACAGAAATTCTATTCTGATATAAACTTTTAATTTATAACAGAAG  300

seq1  CATCCTGACAAAAGCAAAATAAGAATAACACAGCAAATGGACTATCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGACAAAAGCAAAATAAGAATAACACAGCAAATGGACTATCATCA  350

seq1  AAGACACAAACATAGGTACGAAAATACTAAAACAACACTAGGAAGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAAACATAGGTACGAAAATACTAAAACAACACTAGGAAGGCAAA  400

seq1  TCCAATCAATAGCCTATCTTCAAGTTAGAATTGCCCTAGATCTACAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAATAGCCTATCTTCAAGTTAGAATTGCCCTAGATCTACAGTGA  450

seq1  GAACTTTGGGATTGAAAATCTACTGCTACTTATCACATTAGCAAAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGGGATTGAAAATCTACTGCTACTTATCACATTAGCAAAATGAA  500

seq1  GAAGGTAAGTTATGTAATCATTTCTGAGGGCATAAGAAAGCATTCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAAGTTATGTAATCATTTCTGAGGGCATAAGAAAGCATTCAGTGT  550

seq1  AATACAGTATTATATGCCTGATAATTTTTAGCTCCCAGGAAATGGTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTATTATATGCCTGATAATTTTTAGCTCCCAGGAAATGGTGTCA  600

seq1  TCAATGTAATAAGAATATCTAATAAACCCTGGAACAAATCTAACAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAATAAGAATATCTAATAAACCCTGGAACAAATCTAACAAATGG  650

seq1  TGTGTCATAGTTTAGGTTTCTATGGCTGTTATGAAACATTGTGACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATAGTTTAGGTTTCTATGGCTGTTATGAAACATTGTGACCAAAA  700

seq1  AGCTAGTTAGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTAGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTG  750

seq1  TTCATTATCAAAGGAAGCCAGGGCAGGATCTCAAACAGGGCAGGAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCAAAGGAAGCCAGGGCAGGATCTCAAACAGGGCAGGAACCTG  800

seq1  AAGGCAGGAGCTGATGCAGGTGCCATAAAGAGTGATGCTTACTTGCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAGCTGATGCAGGTGCCATAAAGAGTGATGCTTACTTGCATGC  850

seq1: chr3_36415585_36416535
seq2: B6Ng01-088J21.g_68_1019 (reverse)

seq1  CCCCTCAACCT-CCAGATCCCCCAACACACACAAATGTAAGGCTTCCAGG  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAACCTCCCAGATCCCCCAACACACACAAATGTAAGGCTTCCAGG  50

seq1  CTACATGCCTAGAAAATCCTGGTACAGGGGAGTCAGCTGACCAGAGAGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCCTAGAAAATCCTGGTACAGGGGAGTCAGCTGACCAGAGAGGA  100

seq1  AGCCAGTCCTGACAAATATTTCTTGAGAACTAGGGAGACATCGTCACTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCCTGACAAATATTTCTTGAGAACTAGGGAGACATCGTCACTCT  150

seq1  GCTCAGCCACATCGGTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCACATCGGTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAA  200

seq1  CACTGCTTTCTGCACAACTGTGCTTTGTACTAGAGCATAGACTTCTGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTCTGCACAACTGTGCTTTGTACTAGAGCATAGACTTCTGGAT  250

seq1  CTTGTCCACCCAGGATTCTTTGTCCTAATCTAGAGAGCTTGGGTTTTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCACCCAGGATTCTTTGTCCTAATCTAGAGAGCTTGGGTTTTGAT  300

seq1  TGAAGGCAACAGCATCCATATTGTTAAAAGACAGTGGCCCGTGACGTAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAACAGCATCCATATTGTTAAAAGACAGTGGCCCGTGACGTAGT  350

seq1  CCTGGTCCCCGGGAAACTCTTTAGAAGGAAGATGGACTCAGACAGGCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCCGGGAAACTCTTTAGAAGGAAGATGGACTCAGACAGGCACA  400

seq1  TTCTGTTTTCTTCCCTGCTTCCTCCTTCTATTGGGGAGCCACGGAGATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTCTTCCCTGCTTCCTCCTTCTATTGGGGAGCCACGGAGATCA  450

seq1  CATAAGAATCTGAAAAACAAACAGCGCCTCATATAAAGAGTGAGTTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAATCTGAAAAACAAACAGCGCCTCATATAAAGAGTGAGTTCCAT  500

seq1  GAGACATAACAAGACCCCTAATTTGTTCAAGCCCCTGTTTACTGGGACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAACAAGACCCCTAATTTGTTCAAGCCCCTGTTTACTGGGACAT  550

seq1  TTAACCTGGGTCCTTATTTATTTATGTAAACAAACTAGCAAACGGATATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGGGTCCTTATTTATTTATGTAAACAAACTAGCAAACGGATATT  600

seq1  GGAAGAATCTGTGTAACTGATTCAAGTGAAAAAACAAAATGAACAAGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATCTGTGTAACTGATTCAAGTGAAAAAACAAAATGAACAAGACC  650

seq1  CCACTACATCAAGAGCTCAATTCTTCACTTGCGCTTGTATGTAATACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACATCAAGAGCTCAATTCTTCACTTGCGCTTGTATGTAATACAAA  700

seq1  TACCCGACTAATTCTAGTGATTTTAGAGTTTTAATTACGGATCGAGCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGACTAATTCTAGTGATTTTAGAGTTTTAATTACGGATCGAGCTTA  750

seq1  AATAAGAACAAGTAGCTCAGACTAGCTCCCAGAGCTATTTTGATATACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAACAAGTAGCTCAGACTAGCTCCCAGAGCTATTTTGATATACAG  800

seq1  AGCTCTGCTGATACTTTTTCTACATCAGTATAACTAGGATTCTAAAAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTGATACTTTTTCTACATCAGTATAACTAGGATTCTAAAAGTC  850

seq1  TCTAGATCATATGGTTTAGAGGGGGAAACCCCGTTCCCTACTCTCTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCATATGGTTTAGAGGGGGAAACCCCGTTCCCTACTCTCTTTAA  900

seq1  ATGGCTTAACCATTCAAAATGTTCAAAATTCTCACCGTTTATAACTGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAACCATTCAAAATGTTCAAAATTCTCACCGTTTATAACTGAAT  950

seq1  TC  951
      ||
seq2  TC  952