BAC Information

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BAC

Clone NameB6Ng01-088K23
Chromosome3 (Build37)
Map Location 116,837,300 - 116,985,577
singlet/doubletdoublet
Overlap geneLOC674908
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneD3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K23.bB6Ng01-088K23.g
ACCDH901472DH901473
length1,045160
definitionDH901472|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K23, 5' end.DH901473|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,984,532 - 116,985,577)(116,837,300 - 116,837,460)
sequence
gaattcactgactggctgctcttacaggccctttctcgcaggaagagtct
tcctaaactctgtaaattacctgtgcttcctttggcacagtaataccatc
attatgggatagtcttctgtctctataaagttttaaatatgggattgttc
agttttcaatgaaaatggtatcactgactctgctactcaagtattttgtg
agttatgacaagtttatgtaaacccatgcatctttgaagacttttccaat
gtcaaatgatttgcttccagtagaactggaagtcttcaacagcatccaac
atctttcttcctgtaaataattgtcattccccatagtatctcagcatctc
tgattgctagccttccaaggcctggaccagttttgtgctccaatcttagc
ccaagacttctggatgctgtcttgttatccttccaggatggcttcctgtg
tttcttcatcagaacccatcctttgctgcagagaactgatctttcagatg
ccatgagtaatgcagaagagagacaatgagtcttcccttcattctgacat
gtaatttgtgggcaggaatggtgggtcgtacaggattcagtctaacagaa
ctcaaacctccctcttattcacctgtcatcttcagggtagacttctgact
gtgtccttctcccaagaacatcccgacatgcttttctttcttagaagaga
gatcttttacatctgtttgaaaatctcatagtttgcttctgcaaacatac
attctgctcactttgctgagcaaatctttcagattccaatttgtccccaa
aacacagtcctataaacctgaacttcgaatcatcctaagttctagtttgg
atatctgcatgtgtcttataattctctcattgttaagttttactttcaaa
ggtggatgttgtatttgtttctggaatgttctgtttcaaactaccaggac
tacctccttttcagtcccttaaattaaaaaaagaaatgtagtgagtgatg
atcatgcatacagaatctttttgccacataaatgatgatattggg
ttaaaagctactatgaggcattcaatgtatggaatttaagatgatttttg
tgttcatgtgtgcacaggagtggggggtaggagatggggttggggggcag
tgttcctgacgctctactgccagcagggacaggttccattatatgttaga
aagaaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116984532_116985577
seq2: B6Ng01-088K23.b_49_1093 (reverse)

seq1  CCCAATATCATCATTTTATGTGGCAAAAAGATTCTGTATGCATGATCATC  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAATATCATCA-TTTATGTGGCAAAAAGATTCTGTATGCATGATCATC  49

seq1  ACTCACTACATTTCTTTTTTTAATTTAAGGGACTGAAAAGGAGGTAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTACATTTCTTTTTTTAATTTAAGGGACTGAAAAGGAGGTAGTCC  99

seq1  TGGTAGTTTGAAACAGAACATTCCAGAAACAAATACAACATCCACCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTTGAAACAGAACATTCCAGAAACAAATACAACATCCACCTTTG  149

seq1  AAAGTAAAACTTAACAATGAGAGAATTATAAGACACATGCAGATATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACTTAACAATGAGAGAATTATAAGACACATGCAGATATCCAA  199

seq1  ACTAGAACTTAGGATGATTCGAAGTTCAGGTTTATAGGACTGTGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACTTAGGATGATTCGAAGTTCAGGTTTATAGGACTGTGTTTTGG  249

seq1  GGACAAATTGGAATCTGAAAGATTTGCTCAGCAAAGTGAGCAGAATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATTGGAATCTGAAAGATTTGCTCAGCAAAGTGAGCAGAATGTAT  299

seq1  GTTTGCAGAAGCAAACTATGAGATTTTCAAACAGATGTAAAAGATCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGAAGCAAACTATGAGATTTTCAAACAGATGTAAAAGATCTCTC  349

seq1  TTCTAAGAAAGAAAAGCATGTCGGGATGTTCTTGGGAGAAGGACACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAAAGAAAAGCATGTCGGGATGTTCTTGGGAGAAGGACACAGTC  399

seq1  AGAAGTCTACCCTGAAGATGACAGGTGAATAAGAGGGAGGTTTGAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTACCCTGAAGATGACAGGTGAATAAGAGGGAGGTTTGAGTTCT  449

seq1  GTTAGACTGAATCCTGTACGACCCACCATTCCTGCCCACAAATTACATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTGAATCCTGTACGACCCACCATTCCTGCCCACAAATTACATGT  499

seq1  CAGAATGAAGGGAAGACTCATTGTCTCTCTTCTGCATTACTCATGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAGGGAAGACTCATTGTCTCTCTTCTGCATTACTCATGGCATC  549

seq1  TGAAAGATCAGTTCTCTGCAGCAAAGGATGGGTTCTGATGAAGAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCAGTTCTCTGCAGCAAAGGATGGGTTCTGATGAAGAAACACA  599

seq1  GGAAGCCATCCTGGAAGGATAACAAGACAGCATCCAGAAGTCTTGGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATCCTGGAAGGATAACAAGACAGCATCCAGAAGTCTTGGGCTA  649

seq1  AGATTGGAGCACAAAACTGGTCCAGGCCTTGGAAGGCTAGCAATCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGAGCACAAAACTGGTCCAGGCCTTGGAAGGCTAGCAATCAGAGA  699

seq1  TGCTGAGATACTATGGGGAATGACAATTATTTACAGGAAGAAAGATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATACTATGGGGAATGACAATTATTTACAGGAAGAAAGATGTTG  749

seq1  GATGCTGTTGAAGACTTCCAGTTCTACTGGAAGCAAATCATTTGACATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTGAAGACTTCCAGTTCTACTGGAAGCAAATCATTTGACATTG  799

seq1  GAAAAGTCTTCAAAGATGCATGGGTTTACATAAACTTGTCATAACTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTTCAAAGATGCATGGGTTTACATAAACTTGTCATAACTCACA  849

seq1  AAATACTTGAGTAGCAGAGTCAGTGATACCATTTTCATTGAAAACTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGAGTAGCAGAGTCAGTGATACCATTTTCATTGAAAACTGAAC  899

seq1  AATCCCATATTTAAAACTTTATAGAGACAGAAGACTATCCCATAATGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATATTTAAAACTTTATAGAGACAGAAGACTATCCCATAATGATG  949

seq1  GTATTACTGTGCCAAAGGAAGCACAGGTAATTTACAGAGTTTAGGAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTGTGCCAAAGGAAGCACAGGTAATTTACAGAGTTTAGGAAGAC  999

seq1  TCTTCCTGCGAGAAAGGGCCTGTAAGAGCAGCCAGTCAGTGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGCGAGAAAGGGCCTGTAAGAGCAGCCAGTCAGTGAATTC  1045

seq1: chr3_116837300_116837460
seq2: B6Ng01-088K23.g_72_231

seq1  TTAAAAGCTACTATGAGGCATTCAATGTATGGAATTTAAGATGATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCTACTATGAGGCATTCAATGTATGGAATTTAAGATGATTTTTG  50

seq1  TGTTCATGTGTGCACAGGAGTGGGGGGTAGGAGATGGGGTTGGGGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTGTGCACAGGAGTGGGGGGTAGGAGATGGGGTTGGGGGGCAG  100

seq1  TGTTCCTGAATGCTCTACTGTCAGCAGGGACAGGTTCCAATACAGGTAAG  150
      |||||||| | ||||||||| |||||||||||||||||| || | || ||
seq2  TGTTCCTG-ACGCTCTACTGCCAGCAGGGACAGGTTCCATTATATGTTAG  149

seq1  AAAGAAAGCTC  161
      |||||||||||
seq2  AAAGAAAGCTC  160