BAC Information

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BAC

Clone NameB6Ng01-088M03
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,192 - 41,059,737103,780,375 - 103,781,519
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088M03.bB6Ng01-088M03.g
ACCDH901526DH901527
length1,0361,130
definitionDH901526|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M03, 5' end.DH901527|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,192 - 41,059,737)(103,780,375 - 103,781,519)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggactccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatctattcttgatcttacagcacaagccattgctgtt
cttttcaggaattttccccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtggcagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctagttgtctgtcgctatacccgtaccatgcagtttttatcacaattgc
tctgtagtacagttttaggtctggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctagccttggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttctttagagacttgacgtttttatcata
cagatctttcacttccttagttagagtcagccaagtatttatattatttg
tgactatgagaaggtgttgtttccctaatttctttctcagcctgttttat
cctttgtatacagaaagccattgacttgtgtgagtt
gaattcaaaagctggccctcctctgggccggcagggcagcatggggtggg
gagcatgtggatttggtgaacaatcaaaggtaagttgggttcagccccat
ttgcctgctctgctgctcaagcccagctgtggctggctgggagctcccac
ttgtgggctgaggaggagggtctagaatgctcccctggtattcttgacat
cattgtcgctagtcttgtgactgtgttgtctaacaccgtacacactagcc
acatgtgacacttaaattttcatggaaatcaaataaaagtcaaaaggctt
ctactcttactagcttcgtgttaagtagtttttcaacacccacctgtggc
ttgtggctgttctatgagacaaggcagatacagaacttctctgccattca
gctgagttaaaaacccaacttccctcctctctctccaggttctctctctc
atagacctcacccaccaactctcctgcattcccaatattttgggtcaaac
cccatcgtcatacttgagggtgacgtttttccctctgctaaaatgtcttt
cctctgcccataagtgtctactcagtgaaatcctgctcactcttccaggt
tcagatcagtgacagctcctaagtcccccaccatttgactttgagcattc
ccaaagctgtacctgtcacgacaccttttagcactaggccaggttggttg
tgggcctgtgttggctgcactgctcactggtgcctgtgggcagcagcggt
cttactgctctctgggtaaagaaggcctttaaagctgagtggagaaagtc
cttcccagcagcctctccatcctgggaatttggggatggaacctagagcc
ttgtacacgtcacacaagcatcctactcaggctcttggtggctcgttgtg
tgatgctatttctaaggcatgagtcattcctaatgatttactttttagtc
cttcaaaatattatatttttcaacacaacatcttagatactatgttgccc
gaaacctctctttctctagtgatggtactaatttctcaatctctctagaa
aacaaaaagtcaggatgagcagtttatcaagaatgctcagctaggaggaa
cgagtggcgttggcaaggaacatacagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059192_41059737
seq2: B6Ng01-088M03.b_51_597 (reverse)

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  50
      |||||||||||||||||||| |||||| ||| ||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  100

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150
      |||||||||||||||||| |||||||||  ||||||||||||||||||||
seq2  TTTCAACAAATGGTGCTGCCACAACTGGCGGTTATCATGTAGAAGAATGC  150

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||| | ||||||||||||||||||||||||||||||||||| 
seq2  GAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATT  200

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  300
       ||||||||||| ||||||||||  ||||||| |||||||||| | ||||
seq2  AGGGAAAAGCCTCGAAGATATGGGTACAGGGGGAAAATTCCTGAAAAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  350
      ||||||||||||||||||||||||  |||||||| |||||||||||||| 
seq2  CAGCAATGGCTTGTGCTGTAAGATCAAGAATAGATAAATGGGACCTCATA  350

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  449
      | |||||||||||||||||||||| ||||||||||| ||||| |||||||
seq2  GCCACCAACAGATTGGGAAAGGATATTTACCTATCCCAAATCGGATAGGG  450

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  499
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGAGTCCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  546
      ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  547

seq1: chr2_103780375_103781519
seq2: B6Ng01-088M03.g_66_1195 (reverse)

seq1  GGACTGGGATGTTCCCTGTCCAAACGCCACTCTGTTGCTTCCTAGCTGAG  50
      ||||| | ||||||| ||  | |||||||||| ||| | |||||||||||
seq2  GGACT-GTATGTTCCTTG--CCAACGCCACTC-GTT-CCTCCTAGCTGAG  45

seq1  CCATCCTTGAATAACTGCTCATCCCTGACTCTCTGTTTTCTTAGAGGAGA  100
       ||| |||||  |||||||||| ||||||| | ||||||| |||| ||||
seq2  -CATTCTTGATAAACTGCTCAT-CCTGACTTTTTGTTTTC-TAGA-GAGA  91

seq1  TTTGGGGAAATTAGTACCATCTACTAGAGCACAGAGAGGTCTCGGGC-AC  149
      ||  | ||||||||||||||| ||||||| | |||||||| |||||| ||
seq2  TT--GAGAAATTAGTACCATC-ACTAGAG-AAAGAGAGGTTTCGGGCAAC  137

seq1  ATAGTATCTAAGATGTTGTGTTGAAAAATATAATATTTTTGAGGGACTAA  199
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ATAGTATCTAAGATGTTGTGTTGAAAAATATAATA-TTTTGAAGGACTAA  186

seq1  AAAGTAAATCATTAGGAATGACTCATGGCCTTAGAAATAGCATCACACAA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTAAATCATTAGGAATGACTCAT-GCCTTAGAAATAGCATCACACAA  235

seq1  CGAGCCACCAAGAGCCTGAGTAGGATGCTTGTGTGACGTGTACAAGGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCACCAAGAGCCTGAGTAGGATGCTTGTGTGACGTGTACAAGGCTC  285

seq1  TAGGTTCCATCCCCAAATTCCCAGGATGGGAGAGGCTGCTGGGAAGGACT  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGGTTCCATCCCCAAATTCCCAGGAT-GGAGAGGCTGCTGGGAAGGACT  334

seq1  TTCTCCACTCAGCTTTAAAGGCCTTCTTTACCCAGAGAGCAGTAAGACCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTCAGCTTTAAAGGCCTTCTTTACCCAGAGAGCAGTAAGACCG  384

seq1  CTGCTGCCCACAGGCACCAGTGAGCAGTGCAGCCAACACAGGCCCACAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCCACAGGCACCAGTGAGCAGTGCAGCCAACACAGGCCCACAAC  434

seq1  CAACCTGGCCTAGTGCTAAAAGGTGTCGTGACAGGTACAGCTTTGGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCCTAGTGCTAAAAGGTGTCGTGACAGGTACAGCTTTGGGAAT  484

seq1  GCTCAAAGTCAAATGGTGGGGGACTTAGGAGCTGTCACTGATCTGAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGTCAAATGGTGGGGGACTTAGGAGCTGTCACTGATCTGAACCT  534

seq1  GGAAGAGTGAGCAGGATTTCACTGAGTAGACACTTATGGGCAGAGGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTGAGCAGGATTTCACTGAGTAGACACTTATGGGCAGAGGAAAG  584

seq1  ACATTTTAGCAGAGGGAAAAACGTCACCCTCAAGTATGACGATGGGGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAGCAGAGGGAAAAACGTCACCCTCAAGTATGACGATGGGGTTT  634

seq1  GACCCAAAATATTGGGAATGCAGGAGAGTTGGTGGGTGAGGTCTATGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAAATATTGGGAATGCAGGAGAGTTGGTGGGTGAGGTCTATGAGA  684

seq1  GAGAGAACCTGGAGAGAGAGGAGGGAAGTTGGGTTTTTAACTCAGCTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCTGGAGAGAGAGGAGGGAAGTTGGGTTTTTAACTCAGCTGAA  734

seq1  TGGCAGAGAAGTTCTGTATCTGCCTTGTCTCATAGAACAGCCACAAGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGAAGTTCTGTATCTGCCTTGTCTCATAGAACAGCCACAAGCCA  784

seq1  CAGGTGGGTGTTGAAAAACTACTTAACACGAAGCTAGTAAGAGTAGAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGTGTTGAAAAACTACTTAACACGAAGCTAGTAAGAGTAGAAGC  834

seq1  CTTTTGACTTTTATTTGATTTCCATGAAAATTTAAGTGTCACATGTGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACTTTTATTTGATTTCCATGAAAATTTAAGTGTCACATGTGGCT  884

seq1  AGTGTGTACGGTGTTAGACAACACAGTCACAAGACTAGCGACAATGATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTACGGTGTTAGACAACACAGTCACAAGACTAGCGACAATGATGT  934

seq1  CAAGAATACCAGGGGAGCATTCTAGACCCTCCTCCTCAGCCCACAAGTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATACCAGGGGAGCATTCTAGACCCTCCTCCTCAGCCCACAAGTGG  984

seq1  GAGCTCCCAGCCAGCCACAGCTGGGCTTGAGCAGCAGAGCAGGCAAATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCAGCCAGCCACAGCTGGGCTTGAGCAGCAGAGCAGGCAAATGG  1034

seq1  GGCTGAACCCAACTTACCTTTGATTGTTCACCAAATCCACATGCTCCCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACCCAACTTACCTTTGATTGTTCACCAAATCCACATGCTCCCCA  1084

seq1  CCCCATGCTGCCCTGCCGGCCCAGAGGAGGGCCAGCTTTTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCTGCCCTGCCGGCCCAGAGGAGGGCCAGCTTTTGAATTC  1130