BAC Information

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BAC

Clone NameB6Ng01-088M17
Chromosome3 (Build37)
Map Location 37,085,969 - 37,208,052
singlet/doubletdoublet
Overlap geneIl21, Cetn4
Upstream geneGpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2
Downstream geneBbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088M17.bB6Ng01-088M17.g
ACCDH901552DH901553
length1,2191,165
definitionDH901552|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M17, 5' end.DH901553|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,085,969 - 37,087,204)(37,206,877 - 37,208,052)
sequence
gaattcaggcttaccatgtccattttcgtgcaggagaagactgaggcact
gtggttaagtcaagctgcaaggcctgcagttcctgctttaaccagtgagc
ctttcagcagtagctaagagcagccttgacagcagaggcattgggttgag
ctggggaggtgaagacaccacactcaggaaagacacacttgtatgccaca
gttctccaccagccgaggctaagccaggaaacagtcttaagtaaaagcag
tcctgggtgtagaccaccatggggttttcaaagtttctctctgtggaagt
gaaaggtgtctcagactgttgattatatataatggactgacctttgtttt
gttttttgtttttaattactgttggttaagtatacaccatgaaactcttg
gtgttcttacaggcatccttgttggttttagtactgctgcagattggatt
acacacacacacgcgcgcgcgcgcgcacacacgcacacaagcatacacac
atgcatgcacacacagagacacacattttggtactttcccttctgtacag
aaaggggtggaacagttataactgtgcacatgccatgatggtggcagaga
atgcgtcttttttcggcctgcttataagaactaagtctctctcttataca
tactgatgataggaagaatctcccacagagcagcttctaatttcatacat
cttaaacacttctctccttctctatcttctggggcagaatgtgttccaac
agatacaaaattgtggcacagcctctagcctcatctctttaggtcataac
agattctaacatgtgaccttaactgtccctccaacctccacatgctaaag
acctgcttcccagtgttgtgctattgagatgtggggagcctttaagagat
ggagcctagtgggagtgtggccttaagagtgggagactcttaatcatgag
gcacaatgtaccttttccatcccaggtgattaccttgggcgtgtgtcgtg
tgaaggaagcgacagcagaaggagcagctgacatacagaatcgatgggac
atttctggagcgcttgggtaataacttagccaaagaatataagaaaggcg
agtagccagtgcaagccacttatctaactgattgagatacatttcaggtt
gaatgtcactggttctcagcccagccatacttcgaagacatctactcttg
ttccacaggcccaccatga
gaattcttgaagatgatgaagaagaccagcctttattagctgcttggtgc
cttccaagaggtttggacctcctgttaacagctttcctgttaagcagttc
aatgatgtaatacctgagtgtatccatttccacgtttagtttaggttagt
cccttggtgtctaatctgtgccagaagttatatgtccctaccaatgtcat
taaatctgtagtagtaagaaacaaacagacaaacaaaagcatgatttatt
tgaactgtgagccccaaaacagtatttccatatggtattttaaagtcata
gattccaaagacatttgacttttatttttcagttgaataaacttggcccc
cagatccagatgaaattgtttttaaaaacaatctgaaaatggtatttttc
cattatttccttttatatgacttaaaaaacacctgataaacatgttcttt
ttaaaaatctgttccttcaatatgtaaagtattaataaaactagctgaca
tacagtgtttttaagtatcttctggtagttactgctgggctttcactccc
tgggtcaggcaacacagtagtaagttctttaagaggtaaggccattaagg
gtcctcctttcttaatgaggttaagagtctttttaaaagagtcttcaagg
cctatgtgatgactcagatcaaagcatttgtcactgtgtctgacagcctg
actttggtcctacatggtggaaggtgagaactggttctcacaacttgtcc
tctgatctccacatgcatgctatagtgtgtgagcccccccccctcacaca
cacatataatttaaatgtattattacatgtatgggtgttttgcttgcatc
tgtgtctctgggccacttgagtgcctggagaccacagaggccagagggct
ttggaatcatagaaggtttgtgagcttttatgtagtgctgggaatcgact
cctggaagggcaaaatggcttgtacttcttgcattttgtcatgggcgctc
ccagtaaggccttcccagatgaatgcttttatataagacctccatgacac
aagacagcttgttattttgtggctttgagaacaacctggaggacatatca
ggaggttaggatacttaggaactatttcaaatccctaggtgacttctttt
attcttggctggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37085969_37087204
seq2: B6Ng01-088M17.b_48_1266

seq1  GAATTCAGGCTTACCATGTCCATTTT-GTGCAGGAGAAGACTGAGGCACT  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCAGGCTTACCATGTCCATTTTCGTGCAGGAGAAGACTGAGGCACT  50

seq1  GTGGTTAAGTCAAGCTGCAAGGCCTGCAGTTCCTGCTTTAACCAGTGAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGTCAAGCTGCAAGGCCTGCAGTTCCTGCTTTAACCAGTGAGC  100

seq1  CTTTCAGCAGTAGCTAAGAGCAGCCTTGACAGCAGAGGCATTGGGTTGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCAGTAGCTAAGAGCAGCCTTGACAGCAGAGGCATTGGGTTGAG  150

seq1  CTGGGGAGGTGAAGACACCACACTCAGGAAAGACACACTTGTATGCCACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGGTGAAGACACCACACTCAGGAAAGACACACTTGTATGCCACA  200

seq1  GTTCTCCACCAGCCGAGGCTAAGCCAGGAAACAGTCTTAAGTAAAAGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCACCAGCCGAGGCTAAGCCAGGAAACAGTCTTAAGTAAAAGCAG  250

seq1  TCCTGGGTGTAGACCACCATGGGGTTTTCAAAGTTTCTCTCTGTGGAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTGTAGACCACCATGGGGTTTTCAAAGTTTCTCTCTGTGGAAGT  300

seq1  GAAAGGTGTCTCAGACTGTTGATTATATATAATGGACTGACCTTTGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGTCTCAGACTGTTGATTATATATAATGGACTGACCTTTGTTTT  350

seq1  GTTTTTTGTTTTTAATTACTGTTGGTTAAGTATACACCATGAAACTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTAATTACTGTTGGTTAAGTATACACCATGAAACTCTTG  400

seq1  GTGTTCTTACAGGCATCCTTGTTGGTTTTAGTACTGCTGCAGATTGGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTACAGGCATCCTTGTTGGTTTTAGTACTGCTGCAGATTGGATT  450

seq1  ACACACACACACGCGCGCGCGCGCGCACACACGCACACAAGCATACACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACGCGCGCGCGCGCGCACACACGCACACAAGCATACACAC  500

seq1  ATGCATGCACACACAGAGACACACATTTTGGTACTTTCCCTTCTGTACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCACACACAGAGACACACATTTTGGTACTTTCCCTTCTGTACAG  550

seq1  AAAGGGGTGGAACAGTTATAACTGTGCACATGCCATGATGGTGGCAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTGGAACAGTTATAACTGTGCACATGCCATGATGGTGGCAGAGA  600

seq1  ATGCGTCTTTTTTCGGCCTGCTTATAAGAACTAAGTCTCTCTCTTATACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTCTTTTTTCGGCCTGCTTATAAGAACTAAGTCTCTCTCTTATACA  650

seq1  TACTGATGATAGGAAGAATCTCCCACAGAGCAGCTTCTAATTTCATACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGATAGGAAGAATCTCCCACAGAGCAGCTTCTAATTTCATACAT  700

seq1  CTTAAACACTTCTCTCCTTCTCTATCTTCTGGGGCAGAATGTGTTCCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACTTCTCTCCTTCTCTATCTTCTGGGGCAGAATGTGTTCCAAC  750

seq1  AGATACAAAATTGTGGCACAGCCTCTAGCCTCATCTCTTTAGGTCATAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAAATTGTGGCACAGCCTCTAGCCTCATCTCTTTAGGTCATAAC  800

seq1  AGATTCTAACATGTGACCTTAACTGTCCCTCCAACCTCCACATGCTAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAACATGTGACCTTAACTGTCCCTCCAACCTCCACATGCTAAAG  850

seq1  ACCTGCTTCCCAGTGTTGTGCTATTGAGATGTGGGGAGCCTTTAAGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCCCAGTGTTGTGCTATTGAGATGTGGGGAGCCTTTAAGAGAT  900

seq1  GGAGCCTAGTGGGAGTGTGGCCTTAAGAGTGGGAGACTCTTAATCATGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGTGGGAGTGTGGCCTTAAGAGTGGGAGACTCTTAATCATGAG  950

seq1  GCACAATGTACCTTTTCCATCCCAGGTTGATTACCTTGGGCGTGTGTCGT  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACAATGTACCTTTTCCATCCCAGG-TGATTACCTTGGGCGTGTGTCGT  999

seq1  GGTGAAGGAAGCGGACAAGCAGAAGGAGCAGCTGACATACAG-ATCGATG  1048
       ||||||||||| ||| ||||||||||||||||||||||||| |||||||
seq2  -GTGAAGGAAGC-GAC-AGCAGAAGGAGCAGCTGACATACAGAATCGATG  1046

seq1  GGAACATTTCTGGAGCGCTTGAGTACATAACTTAGCCACAG-ATATAAGA  1097
      || |||||||||||||||||| ||| |||||||||||| || ||||||||
seq2  GG-ACATTTCTGGAGCGCTTGGGTA-ATAACTTAGCCAAAGAATATAAGA  1094

seq1  AAGGCGAGTAG-CAGTGGCACAGGCCACTTATCCATAACTGAGTGAG-TA  1145
      ||||||||||| |||||   || ||||||||||  ||||||| |||| ||
seq2  AAGGCGAGTAGCCAGTG---CAAGCCACTTATC--TAACTGATTGAGATA  1139

seq1  CATTTCCAGTTGAATGTCCACTGTGTCTCAGCCCAGCCCCATCAACCTTC  1195
      ||||||  ||||||||| |||||  ||||||||||||        | | |
seq2  CATTTCAGGTTGAATGT-CACTGGTTCTCAGCCCAGC--------CATAC  1180

seq1  TCCAAAGACCATCCTACCTCTGTCCCCACA-GCCCACCATGA  1236
      | | |||| ||| ||| ||||    ||||| |||||||||||
seq2  TTCGAAGA-CAT-CTA-CTCTTGTTCCACAGGCCCACCATGA  1219

seq1: chr3_37206877_37208052
seq2: B6Ng01-088M17.g_68_1232 (reverse)

seq1  ACTCCAGCCAAAGATTTAGAGAGAGCTCACCTAGGTGGTATTTAGAATAG  50
      ||||||||| |||| | | ||| || |||||||   || ||||  |||||
seq2  ACTCCAGCC-AAGAATAAAAGA-AG-TCACCTA---GGGATTTGAAATAG  44

seq1  TTTCCTAAGTGATCCTAACCTCCTGGTATGTGTCCTTCAGTTTTGTTCTC  100
       ||||||||| ||||||||||||||  || |||||| |||  ||||||||
seq2  -TTCCTAAGT-ATCCTAACCTCCTG--ATATGTCCTCCAG-GTTGTTCTC  89

seq1  ATAG-CACAATATAACAAGCTGTCTTGTGTCATGGAAGTCTATGATAAAA  149
      | || ||||| ||||||||||||||||||||||||| ||||   ||||||
seq2  AAAGCCACAAAATAACAAGCTGTCTTGTGTCATGGAGGTCTTATATAAAA  139

seq1  GCATTCATCTGTGAAGGCCTTACTGTGAGCGCCCATGACAGAATGCAAG-  198
      ||||||||||| ||||||||||||| |||||||||||||| |||||||| 
seq2  GCATTCATCTGGGAAGGCCTTACTGGGAGCGCCCATGACAAAATGCAAGA  189

seq1  AGTACAAGCCATTTTTGCCCTTCCAGGGGTCGATTCCCAGCACCTACATA  248
      ||||||||||| ||||||||||||||| |||||||||||||| |||||||
seq2  AGTACAAGCCA-TTTTGCCCTTCCAGGAGTCGATTCCCAGCA-CTACATA  237

seq1  GAAGCTCACAAACCTTCTATGATTCCAAAGCCCTCTGGCCTCTGTGGTCT  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACAAACCTTCTATGATTCCAAAGCCCTCTGGCCTCTGTGGTCT  287

seq1  CCAGGCACTCAAGTGGCCCAGAGACACAGATGCAAGCAAAACACCCATAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTCAAGTGGCCCAGAGACACAGATGCAAGCAAAACACCCATAC  337

seq1  ATGTAATAATACATTTAAATTATATGTGTGTGTGAGGGGGGGGGGCTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAATACATTTAAATTATATGTGTGTGTGAGGGGGGGGGGCTCAC  387

seq1  ACACTATAGCATGCATGTGGAGATCAGAGGACAAGTTGTGAGAACCAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATAGCATGCATGTGGAGATCAGAGGACAAGTTGTGAGAACCAGTT  437

seq1  CTCACCTTCCACCATGTAGGACCAAAGTCAGGCTGTCAGACACAGTGACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCCACCATGTAGGACCAAAGTCAGGCTGTCAGACACAGTGACA  487

seq1  AATGCTTTGATCTGAGTCATCACATAGGCCTTGAAGACTCTTTTAAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTGATCTGAGTCATCACATAGGCCTTGAAGACTCTTTTAAAAAG  537

seq1  ACTCTTAACCTCATTAAGAAAGGAGGACCCTTAATGGCCTTACCTCTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAACCTCATTAAGAAAGGAGGACCCTTAATGGCCTTACCTCTTAA  587

seq1  AGAACTTACTACTGTGTTGCCTGACCCAGGGAGTGAAAGCCCAGCAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTACTACTGTGTTGCCTGACCCAGGGAGTGAAAGCCCAGCAGTAA  637

seq1  CTACCAGAAGATACTTAAAAACACTGTATGTCAGCTAGTTTTATTAATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGAAGATACTTAAAAACACTGTATGTCAGCTAGTTTTATTAATAC  687

seq1  TTTACATATTGAAGGAACAGATTTTTAAAAAGAACATGTTTATCAGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATTGAAGGAACAGATTTTTAAAAAGAACATGTTTATCAGGTGT  737

seq1  TTTTTAAGTCATATAAAAGGAAATAATGGAAAAATACCATTTTCAGATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTCATATAAAAGGAAATAATGGAAAAATACCATTTTCAGATTG  787

seq1  TTTTTAAAAACAATTTCATCTGGATCTGGGGGCCAAGTTTATTCAACTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAACAATTTCATCTGGATCTGGGGGCCAAGTTTATTCAACTGA  837

seq1  AAAATAAAAGTCAAATGTCTTTGGAATCTATGACTTTAAAATACCATATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGTCAAATGTCTTTGGAATCTATGACTTTAAAATACCATATG  887

seq1  GAAATACTGTTTTGGGGCTCACAGTTCAAATAAATCATGCTTTTGTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTGTTTTGGGGCTCACAGTTCAAATAAATCATGCTTTTGTTTGT  937

seq1  CTGTTTGTTTCTTACTACTACAGATTTAATGACATTGGTAGGGACATATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTCTTACTACTACAGATTTAATGACATTGGTAGGGACATATA  987

seq1  ACTTCTGGCACAGATTAGACACCAAGGGACTAACCTAAACTAAACGTGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGCACAGATTAGACACCAAGGGACTAACCTAAACTAAACGTGGA  1037

seq1  AATGGATACACTCAGGTATTACATCATTGAACTGCTTAACAGGAAAGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATACACTCAGGTATTACATCATTGAACTGCTTAACAGGAAAGCTG  1087

seq1  TTAACAGGAGGTCCAAACCTCTTGGAAGGCACCAAGCAGCTAATAAAGGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGAGGTCCAAACCTCTTGGAAGGCACCAAGCAGCTAATAAAGGC  1137

seq1  TGGTCTTCTTCATCATCTTCAAGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  TGGTCTTCTTCATCATCTTCAAGAATTC  1165