BAC Information

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BAC

Clone NameB6Ng01-088N16
Chromosome3 (Build37)
Map Location 44,391,402 - 44,392,648
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N16.bB6Ng01-088N16.g
ACCDH901596DH901597
length1,2151,232
definitionDH901596|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N16, 5' end.DH901597|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaataaagtcctaaattaaaaactcagtaacctggagcatgtt
ctttgaacatgctaatatggaactcaattattgccataatttaatagttc
actgtttcctatataactgggcaacatactaaaataagtttgagaattac
ctccctagacgatcataaaagttatctggttaacactcctttgtaatttc
atactgtgccatatgactccaaaccaatacaggcacaaaatgggtgtgat
ttatctgatctgaaaaacttttgaaccttgctggagtaacctatcgttat
tatctggggcctgactaaacgacattgggtttcattatatttcttttttt
ttttctaagtttagaaaggaagtaatttgtctttgatgcaaaacagaaag
caaagagcttatttgagcactgtgaagaaaataaaaaagaagaggctgac
ctggtgaaaattacatattcatggaatatattacactaaattgctgtgtt
tctaaatgcagtcctctaatctctaaatggaaaacggtcctttggctaca
gtcagttttccctgaatatggactataacattatattttttttggttttc
attgatatatgttgctcaattttaggaagctagccatctggggaaaaatt
aatgaaggcataaatgaacacaagcatctacaaagtatttccttcagata
tttatttatttaaataaattattgaattgttacctttaaaattgaaatgg
ctaacgacagttttgtttttcttatgaaatcattaataaaaagagcagag
ttttacaattaagaattttttattcactatagagaaacaatttctagttg
gtaatgcaccatttaaatgaaaagcaaggtcatttaaaatatatatgcaa
ggtaataggtatggctacaaatactatttccaacttcaattagaaagtta
catattttttccagtgtatttagagtacttataagagatcactaacaagc
atggtcagaatgtgtatttgtttacagtatacttaaacaggattgcagaa
cagatgcaaaaaatgtataaacccaacatattgaatagttgtgataccat
tcataaatgttattcaaataatattttcttgggggtgaaattatgtttta
acaataacaagaatatagacatgtagtatactagatgtcaaaaatgcttg
cattaaaaaatccta
gaattcataatatggcccataccttctgtttgaagccactatagggatgg
agaagaatgtttttggttgtttttctgcttgctttcaccttgctagaaag
tccattattaactagcattacagcttatttatttatgcttccagcatcta
ttgaaaactagctaagacatccaacactttaaaccaagaaacttgtggat
tcttgaatttttttttcacagacagccattgttggattatctgtactatt
gtgatttaaaaagatatggcacccataaattgtttgagtgcctaggtcat
aaggagtgatacttttagaaggtgtgaccttgttggaagaagtctgtcgc
tgtggttgtgggctttgaggttgcatatgtttaagctatgctcagtgtgg
gacatagtatcctgctgcctacaatatctagatgtagaactctcagatgc
ctttctccagtaccatgtttgcctgtatgctgtctgcttctaaacatgat
gataatggataaagccccgaaagcataaaaatccttaaaagactaaggat
gcaagcaacacgttgtaatataataaatgtggtatagagcaagcttacat
gtcattatcctaaaaagtgagaaactcaattaattttactaaaatccaga
acaagaccagtttgtctactctctccataccaatttaatatatacttaaa
atctatactagagcaataagacaactgaaggagatgaaatgagatacaat
taggtatggaaagaagtcaacatattcttatcaggagctaataggatttt
ataaaaacaaattttgagaacaccacttggaaattgctataacttatgaa
caatttctcccaagtagcaggataccatattaagacaaaagaccactaaa
cttttctatataaacaggtagactaataaagaaattaggaaaacaataca
attcaaaacacctcaaaataaaatagactaattctaggcaagcagcagaa
aacttataataaaaagtgagacattaaaaggaaccaagattggaagactt
tcatgccaacagattgttgtgatagtttaacaaaatgtccacattcccaa
gcattataatttccatgaatccccatcaaatgatgatgtgaagacctaat
ttcaacaataatcgaaattatcggaatactatggccacaataatttctca
gagatttcaagtaggaaaatgaaagaaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44391402_44392648
seq2: B6Ng01-088N16.b_48_1262

seq1  GAATTCTTAATAAAGTCCTAAATTAAAAACTCAGTAACCTGGAGCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATAAAGTCCTAAATTAAAAACTCAGTAACCTGGAGCATGTT  50

seq1  CTTTGAACATGCTAATATGGAACTCAATTATTGCCATAATTTAATAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACATGCTAATATGGAACTCAATTATTGCCATAATTTAATAGTTC  100

seq1  ACTGTTTCCTATATAACTGGGCAACATACTAAAATAAGTTTGAGAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCCTATATAACTGGGCAACATACTAAAATAAGTTTGAGAATTAC  150

seq1  CTCCCTAGACGATCATAAAAGTTATCTGGTTAACACTCCTTTGTAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGACGATCATAAAAGTTATCTGGTTAACACTCCTTTGTAATTTC  200

seq1  ATACTGTGCCATATGACTCCAAACCAATACAGGCACAAAATGGGTGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGCCATATGACTCCAAACCAATACAGGCACAAAATGGGTGTGAT  250

seq1  TTATCTGATCTGAAAAACTTTTGAACCTTGCTGGAGTAACCTATCGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGATCTGAAAAACTTTTGAACCTTGCTGGAGTAACCTATCGTTAT  300

seq1  TATCTGGGGCCTGACTAAACGACATTGGGTTTCATTATATTTCTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGGCCTGACTAAACGACATTGGGTTTCATTATATTTCTTTTTTT  350

seq1  TTTTCTAAGTTTAGAAAGGAAGTAATTTGTCTTTGATGCAAAACAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGTTTAGAAAGGAAGTAATTTGTCTTTGATGCAAAACAGAAAG  400

seq1  CAAAGAGCTTATTTGAGCACTGTGAAGAAAATAAAAAAGAAGAGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCTTATTTGAGCACTGTGAAGAAAATAAAAAAGAAGAGGCTGAC  450

seq1  CTGGTGAAAATTACATATTCATGGAATATATTACACTAAATTGCTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAAATTACATATTCATGGAATATATTACACTAAATTGCTGTGTT  500

seq1  TCTAAATGCAGTCCTCTAATCTCTAAATGGAAAACGGTCCTTTGGCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCAGTCCTCTAATCTCTAAATGGAAAACGGTCCTTTGGCTACA  550

seq1  GTCAGTTTTCCCTGAATATGGACTATAACATTATATTTTTTTTGGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTTCCCTGAATATGGACTATAACATTATATTTTTTTTGGTTTTC  600

seq1  ATTGATATATGTTGCTCAATTTTAGGAAGCTAGCCATCTGGGGAAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATATGTTGCTCAATTTTAGGAAGCTAGCCATCTGGGGAAAAATT  650

seq1  AATGAAGGCATAAATGAACACAAGCATCTACAAAGTATTTCCTTCAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCATAAATGAACACAAGCATCTACAAAGTATTTCCTTCAGATA  700

seq1  TTTATTTATTTAAATAAATTATTGAATTGTTACCTTTAAAATTGAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTAAATAAATTATTGAATTGTTACCTTTAAAATTGAAATGG  750

seq1  CTAACGACAGTTTTGTTTTTCTTATGAAATCATTAATAAAAAGAGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGACAGTTTTGTTTTTCTTATGAAATCATTAATAAAAAGAGCAGAG  800

seq1  TTTTACAATTAAGAATTTTTTATTCACTATAGAGAAACAATTTCTAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAATTAAGAATTTTTTATTCACTATAGAGAAACAATTTCTAGTTG  850

seq1  GTAATGCACCATTTAAATGAAAAGCAAGGTCATTTAAAATATATATGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCACCATTTAAATGAAAAGCAAGGTCATTTAAAATATATATGCAA  900

seq1  GGTAATAGGTATGGCTACAAAATACTATTTCCAACTTCAATTAGGAAAGT  950
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  GGTAATAGGTATGGCTAC-AAATACTATTTCCAACTTCAATTA-GAAAGT  948

seq1  TACATATTTTTTCCAGTGTTATTTAGAGTACTTATAAGAGATCAACTAAC  1000
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TACATATTTTTTCCAGTG-TATTTAGAGTACTTATAAGAGATC-ACTAAC  996

seq1  AAGCAATGGTCAGAAATGTGTATTTGTTTACAGTATACTTAAACAGGATT  1050
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGC-ATGGTCAG-AATGTGTATTTGTTTACAGTATACTTAAACAGGATT  1044

seq1  GCAGGAACAGATGCAAAAAAATGTAATAAAACCCAACATATTGAAATTAG  1100
      ||| |||||||||| ||||||||||   |||||||||||||||||  |||
seq2  GCA-GAACAGATGC-AAAAAATGTA--TAAACCCAACATATTGAA--TAG  1088

seq1  TTGTGATACCATTCAT-AATGTATAATTTAAAATAATATTTTCTTTGGGA  1149
      |||||||||||||||| ||||| ||  || ||||||||||||| ||||| 
seq2  TTGTGATACCATTCATAAATGT-TA--TTCAAATAATATTTTC-TTGGGG  1134

seq1  GTGGAAATTATGTTTTCTAACAATAACAAAGGAAATATAG-CATGTAAGT  1198
      || ||||||||||||  ||||||||||||    ||||||| ||||| |||
seq2  GT-GAAATTATGTTT--TAACAATAACAA---GAATATAGACATGT-AGT  1177

seq1  TAATACCATAGATATGTACAAAGATGCCTTGCCATTAAAAAAAATCCTA  1247
        ||||  ||||| |   |||| ||| |||| ||||  |||||||||||
seq2  --ATAC--TAGATGT---CAAAAATG-CTTG-CATT--AAAAAATCCTA  1215