BAC Information

Click to search

BAC

Clone NameB6Ng01-088O01
Chromosome3 (Build37)
Map Location 59,813,316 - 59,991,341
singlet/doubletdoublet
Overlap geneAadacl2, Aadac, Sucnr1
Upstream geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O01.bB6Ng01-088O01.g
ACCDH901612DH901613
length9241,041
definitionDH901612|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O01, 5' end.DH901613|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,990,418 - 59,991,341)(59,813,316 - 59,814,371)
sequence
gaattctccacgtttggcaaatacgactttctgtatgaaactgacatcac
tatcaacatcaaaccatagtgatttattttactctccactgtcaccttct
tttctggtttaggtattatgtgccccataatggatccttacagaaggttt
aatcctcagtgttgccatgttcagagatgggacttttagtagtgatgaga
tcataaggggattcatgccagggatagatcagtctgttgaggagctcaca
gttgaatgtgctgttaagagtgaaggtccaattacagggagtaggctaca
tgtagaaatcatttccttaaaggttctcagagggtattttagctcttctc
tgtctgtctgtctgtctgtctgtctgtctgtctgtctcagcctctctgtc
tctctctgtctctccggttctgtctctctctgtctctgtttgtttgtctc
tttcctctatctccttccacctttccttccccctctcccttccctgcttt
ctctatctttctctctatggcccctaattgctatgatgggagcagctttg
ctcggcctcacttccctgctaggatcttttacctcactacacactcgtag
cactggggccgagagaacaaaattcttctcctttgcaaaggcacagttac
taactgactttcctaaaccttccttctaaattgagcaagaactttctaat
gatactctgtgtttgatactgccaaagatcctcttggggttcatcactga
aactacttcaagctggatgttgagttgtatccttcttccctcatttaaca
ctgtactttgttcttggggatcttgagatgaagatccacgacaacaaaaa
gaactgaggttctctgtgctcatggctaaggctacctctttaaaatttaa
aaggatgttttggattatcattgc
gaattcattatgtggtcgtcaactactcctcagtttgagccttgctctgg
ggtagttgatatatggagaaaacttattctttatgcctgtaggcttaagt
ggtagttcagtcattaacctttaccatagttggtaggctttaattaatta
attaattcattcatttaaatatatatataacaaaataaatataataagat
aaaaaaaatcacatcaaagttggataagacaaatcaacagaggaaaaaga
accaatgagaagaaacaagagtcagagatctggccagttgcacagtctta
aatcccttaaaataaaactaaactacaagctgttatataagcccagagga
tatggtacaagcatgctgcttcagactctgcagacagtgcttatgtgtgt
gaataaatttgacaggtatggctgcaatttctcagtgcatttctctcatc
aaaatatggagaatagttgtacataccttaccttgtaatacatgcagtta
taaaagctattcaagtactattggctctggaagtttaaagatatatttct
tgaataaattgtctattttctagataggctgatcatatttctgcagtaaa
atcaaagaaggttttatagaaaagggtagagtaaaaaaaatcaaaataaa
gaacaaacaaataaacaaaaccaagttcacattacgtataatatggtcat
atcataatatttaaaattgagattaaataatgtaattttagaaggaactt
atgacaacatacatagagggatcataagacattgaatttttgaaagattt
ataattaagcaataaatacaaaagtctttaaaaatgtaagtaaagatgat
tttctaaataacatttaatctaaaacacctgagatttcaaaggcaaaggg
tctttgaaaaaaaatggtcataatattatttggattaattttacaaattc
tttattctgtttggctcgttgtgttttttccctgttaattctcaaacttt
atctcacatttattgaaatacagatctaatgtgaataattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59990418_59991341
seq2: B6Ng01-088O01.b_46_969 (reverse)

seq1  GCAATGATAATCCAAAAGAACCTTTTTAAATTTAAAAGAGGTAGCCAAAG  50
      ||||||||||||||||| | || |||||||||| ||||||||||||  ||
seq2  GCAATGATAATCCAAAACATCC-TTTTAAATTTTAAAGAGGTAGCCTTAG  49

seq1  CCAAGAGCACAGAGAACCTCAGATCAGTTTGTGGAAGTGGATCTTCATCT  100
      ||| |||||||||||||||||| ||  ||||| |  ||||||||||||||
seq2  CCATGAGCACAGAGAACCTCAGTTCTTTTTGTTGTCGTGGATCTTCATCT  99

seq1  CAAGAGCAACAAGAAGAAACTACAGTGTTAGATGAGGGAAGAAGGATACA  150
      ||||| |  |||||| ||| |||||||||| |||||||||||||||||||
seq2  CAAGATCCCCAAGAACAAAGTACAGTGTTAAATGAGGGAAGAAGGATACA  149

seq1  ACTCAACATCCAGCTTGAAGTAGTTTCAGTGATGAA-CCCAAGAGGATCT  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCAACATCCAGCTTGAAGTAGTTTCAGTGATGAACCCCAAGAGGATCT  199

seq1  TTGGCAGTATAAAACACAGAGTATCATTAGAAAGTTCTAGCACAATTTAG  249
      |||||||||| ||||||||||||||||||||||||||| || ||||||||
seq2  TTGGCAGTATCAAACACAGAGTATCATTAGAAAGTTCTTGCTCAATTTAG  249

seq1  AAGGAAGGTTTAGGAAAGTCAGTTAGTAACTGTGCCTTTGCAAAGGAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTTTAGGAAAGTCAGTTAGTAACTGTGCCTTTGCAAAGGAGAA  299

seq1  GAATTTTGTTCTCTTGGCCCCAGTACTATGAGTGTGTAGTGAGGTAAAAG  349
      |||||||||||||| ||||||||| ||| |||||||||||||||||||||
seq2  GAATTTTGTTCTCTCGGCCCCAGTGCTACGAGTGTGTAGTGAGGTAAAAG  349

seq1  ATCCTAGCAGGGAAGTGAGGCCGAGCAAAGCTGCTCCCATCATAGCAACT  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCTAGCAGGGAAGTGAGGCCGAGCAAAGCTGCTCCCATCATAGCAATT  399

seq1  AGGGGCCATAGAGAGAAAGATAGAGAAAGCAGGGAAGGGAGAGGGGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCATAGAGAGAAAGATAGAGAAAGCAGGGAAGGGAGAGGGGGAAG  449

seq1  GAAAGGTGGAAGGAGATAGAGGAAAGAGACAAACAAACAGAGACAGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGGAAGGAGATAGAGGAAAGAGACAAACAAACAGAGACAGAGAG  499

seq1  AGACAGAACCGGAGAGACAGAGAGAGACAGAGAGGCTGAGACAGACAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAACCGGAGAGACAGAGAGAGACAGAGAGGCTGAGACAGACAGAC  549

seq1  AGACAGACAGACAGACAGACAGACAGAGAAGAGCTAAAATACCCTCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGACAGACAGACAGAGAAGAGCTAAAATACCCTCTGAG  599

seq1  AACCTTTAAGGAAATGATTTCTACATGTAGCCTACTCCCTGTAATTGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTAAGGAAATGATTTCTACATGTAGCCTACTCCCTGTAATTGGAC  649

seq1  CTTCACTCTTAACAGCACATTCAACTGTGAGCTCCTCAACAGACTGATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCTTAACAGCACATTCAACTGTGAGCTCCTCAACAGACTGATCT  699

seq1  ATCCCTGGCATGAATCCCCTTATGATCTCATCACTACTAAAAGTCCCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGCATGAATCCCCTTATGATCTCATCACTACTAAAAGTCCCATC  749

seq1  TCTGAACATGGCAACACTGAGGATTAAACCTTCTGTAAGGATCCATTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACATGGCAACACTGAGGATTAAACCTTCTGTAAGGATCCATTATG  799

seq1  GGGCACATAATACCTAAACCAGAAAAGAAGGTGACAGTGGAGAGTAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAATACCTAAACCAGAAAAGAAGGTGACAGTGGAGAGTAAAAT  849

seq1  AAATCACTATGGTTTGATGTTGATAGTGATGTCAGTTTCATACAGAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTATGGTTTGATGTTGATAGTGATGTCAGTTTCATACAGAAAGT  899

seq1  CGTATTTGCCAAACGTGGAGAATTC  924
      |||||||||||||||||||||||||
seq2  CGTATTTGCCAAACGTGGAGAATTC  924

seq1: chr3_59813316_59814371
seq2: B6Ng01-088O01.g_65_1105

seq1  GAATTCATTATGTGGTCGTCAACTACTCCTCAGTTTGAGCCTTGCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTGGTCGTCAACTACTCCTCAGTTTGAGCCTTGCTCTGG  50

seq1  GGTAGTTGATATATGGAGAAAACTTATTCTTTATGCCTGTAGGCTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTGATATATGGAGAAAACTTATTCTTTATGCCTGTAGGCTTAAGT  100

seq1  GGTAGTTCAGTCATTAACCTTTACCATAGTTGGTAGGCTTTAATTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCAGTCATTAACCTTTACCATAGTTGGTAGGCTTTAATTAATTA  150

seq1  ATTAATTCATTCATTTAAATATATATATAACAAAATAAATATAATAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCATTCATTTAAATATATATATAACAAAATAAATATAATAAGAT  200

seq1  AAAAAAAATCACATCAAAGTTGGATAAGACAAATCAACAGAGGAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCACATCAAAGTTGGATAAGACAAATCAACAGAGGAAAAAGA  250

seq1  ACCAATGAGAAGAAACAAGAGTCAGAGATCTGGCCAGTTGCACAGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAGAAGAAACAAGAGTCAGAGATCTGGCCAGTTGCACAGTCTTA  300

seq1  AATCCCTTAAAATAAAACTAAACTACAAGCTGTTATATAAGCCCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTAAAATAAAACTAAACTACAAGCTGTTATATAAGCCCAGAGGA  350

seq1  TATGGTACAAGCATGCTGCTTCAGACTCTGCAGACAGTGCTTATGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTACAAGCATGCTGCTTCAGACTCTGCAGACAGTGCTTATGTGTGT  400

seq1  GAATAAATTTGACAGGTATGGCTGCAATTTCTCAGTGCATTTCTCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTTGACAGGTATGGCTGCAATTTCTCAGTGCATTTCTCTCATC  450

seq1  AAAATATGGAGAATAGTTGTACATACCTTACCTTGTAATACATGCAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGGAGAATAGTTGTACATACCTTACCTTGTAATACATGCAGTTA  500

seq1  TAAAAGCTATTCAAGTACTATTGGCTCTGGAAGTTTAAAGATATATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTATTCAAGTACTATTGGCTCTGGAAGTTTAAAGATATATTTCT  550

seq1  TGAATAAATTGTCTATTTTCTAGATAGGCTGATCATATTTCTGCAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATTGTCTATTTTCTAGATAGGCTGATCATATTTCTGCAGTAAA  600

seq1  ATCAAAGAAGGTTTTATAGAAAAGGGTAGAGTAAAAAAAATCAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAGGTTTTATAGAAAAGGGTAGAGTAAAAAAAATCAAAATAAA  650

seq1  AAACAAACAAATAAACAAAACCAAGTTCACATTACGTATAATATGGTCAT  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACAAATAAACAAAACCAAGTTCACATTACGTATAATATGGTCAT  700

seq1  ATCATAATATTTAAAATTGAGATTAAATAATGTAATTTTAGAAGGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATATTTAAAATTGAGATTAAATAATGTAATTTTAGAAGGAACTT  750

seq1  ATGACAACATACATAGAGGGATCATAAGACATTGAATTTTTGAAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACATACATAGAGGGATCATAAGACATTGAATTTTTGAAAGATTT  800

seq1  ATAATTAAGCAATAAATACAAAAAGTCTTTAAAAATGTAAGTAAAGATGA  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAATTAAGCAATAAATAC-AAAAGTCTTTAAAAATGTAAGTAAAGATGA  849

seq1  TTTTCTAAATAACATTTAATCTAAAACACCTGAGATTTTCAAAGGCAAAG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTCTAAATAACATTTAATCTAAAACACCTGAGA-TTTCAAAGGCAAAG  898

seq1  GGTCTTTGAAAAAAAAATGGTCATAATATTATTTGGATTTAATTTTACAA  950
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GGTCTTTG-AAAAAAAATGGTCATAATATTATTTGGA-TTAATTTTACAA  946

seq1  ATTCTTTATTTCTGTTTGGCTTCTTTGTTGTTTTTTTCCCTGTTTTATTC  1000
      |||||||| ||||||||||| || ||||   ||||||||||| || ||||
seq2  ATTCTTTA-TTCTGTTTGGC-TCGTTGT--GTTTTTTCCCTG-TTAATTC  991

seq1  TTCTAAACTTTATCTTCACATTTATTTGATATTACAGATCTAATGTTGAA  1050
      |   |||||||||| ||||||||| |||| | ||||||||||||| ||||
seq2  T--CAAACTTTATC-TCACATTTA-TTGA-AATACAGATCTAATG-TGAA  1035

seq1  TTATTT  1056
      | ||||
seq2  TAATTT  1041