BAC Information

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BAC

Clone NameB6Ng01-088P08
Chromosome3 (Build37)
Map Location 48,378,557 - 48,516,508
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P08.bB6Ng01-088P08.g
ACCDH901669DH901670
length1,238974
definitionDH901669|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P08, 5' end.DH901670|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,378,557 - 48,379,820)(48,515,524 - 48,516,508)
sequence
gaattcactcacagcataaagccaaatcaataacaggtatatgtgcatgt
tttgtcatcctcaatgactatagtattttataagtctcaaaatacaaacc
atggatatataaagcagaataatgcaggcagagcgttaccttagctcaac
caaagagacactccatatagtaattaaggaagataaaaaactagggaagc
tttcattatatgttctataaattaacacagtttctttctagttaattagc
tggtggaattctcatatacaaacttctcagataagaaatattccctgcat
ttggtgtatctgcattgtatgagccacacttcatctttaacttaaaatct
gtctatatatctatatttatctacttatctatgaagtttcaaattacaaa
ttttatttccttgacatcagaaattgttactctatttgtttactttgaaa
gtttagttgtttaaacatattcattcagaaaaaaaataataattatcaaa
attaaactgtcagtttcttttgaaaatataattttacttaatagaatgaa
tgggtttaataatttgaaacagtataaataatttgtcaaaaattctttta
gtagttggtgcatgcatcccaaggacaccgagtcacgtgcagcaaagaga
ctgtggctttctgctcccagatttttttgctcacactttgaagaattatg
gaaaaacaatcaaatactaacatatgggtaggtttattgctgtataccag
tcaagttgagtattcagagtgggaacaaggatcagatggttagataggtt
gctgaagccatgtactgaacttcacgtctagccttgtcttagagatgagt
tactccagggtaaacataaatggcttaaagaagcacataaaataattcct
ttcatttatggctgaccatcagttaacctgtcagattctttacggtatac
tctccaacagccaaataaagtgtcctcttcacgggaacagacaataggaa
gagacctaatcatacaagatgatgacatcatttacacaaaaacattggtt
cataatttacaaaaagaaatatgaggaatagtagtgaagaaagatgatgc
tagaatgtaaggaaaatcttaaatggtaactgttgttgtaatttgaaatc
taatttgtttagttattccacatgcaataataaatattacacttatccat
tgagacaaattaattagtggaaagaacagattgtttcc
gaattctaagatttccccaaaggtagcatgcactctctactgcacatgcc
ctagctatgaagaggatatttttgttcccagcatccgacttattaactgg
tactactgacttcaggtagacaggctttcctgagtgatcccagtctgagc
ttttaaaggatattttctacagaagatagagtcatagaactgggggcatt
tcactgaatcttcctagaaagacgatggtcagggtcatgtgagaaagatt
tcagagaaatgacattaaaatgtattacatatatgcagttgagcattatt
caatcatgaagaatgttttggctttgggtctggttcatttcattgtatga
tgtttattaatgtgcagttctttataataaagttttaactaaaaataagc
aaaatgtaaccatgttattgacgacacaaaagtaggacctacaaaacatc
atatttagggaaagaactcagactcagaaaggcaaaaatatcaattccct
tttgtacatggaatataaatgaaagagtgacatagacagtgatagcgaga
caaagagaggtcactcacagagacaaagacagagggagagagagaaaata
ttgaaatagaacagagactaatagaggaatatattagagacagagttgag
gggaagggaaatacaataaagggacagatataaccaaacataaagtatca
ttcacaatcaaacactttaattccagtgattatgataacatatactagag
aaataagaaaacaagataaggccatggggtagatcaatgctagagagatt
cctcattgtggacaaagctttaggttcagtactatggaggggggaaagaa
agaaggctggagagcatgaatttcagaaggaatggagggaaagaaagaag
gcaggaatgtcagtatggagaaagaggagaaaagaggaagagagagagca
gcatgagtgggggggtggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48378557_48379820
seq2: B6Ng01-088P08.b_48_1285

seq1  GAATTCACTCACAGCATAAAGCCAAATCAATAACAGGTATATGTGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACAGCATAAAGCCAAATCAATAACAGGTATATGTGCATGT  50

seq1  TTTGTCATCCTCAATGACTATAGTATTTTATAAGTCTCAAAATACAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATCCTCAATGACTATAGTATTTTATAAGTCTCAAAATACAAACC  100

seq1  ATGGATATATAAAGCAGAATAATGCAGGCAGAGCGTTACCTTAGCTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATATAAAGCAGAATAATGCAGGCAGAGCGTTACCTTAGCTCAAC  150

seq1  CAAAGAGACACTCCATATAGTAATTAAGGAAGATAAAAAACTAGGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACACTCCATATAGTAATTAAGGAAGATAAAAAACTAGGGAAGC  200

seq1  TTTCATTATATGTTCTATAAATTAACACAGTTTCTTTCTAGTTAATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATATGTTCTATAAATTAACACAGTTTCTTTCTAGTTAATTAGC  250

seq1  TGGTGGAATTCTCATATACAAACTTCTCAGATAAGAAATATTCCCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAATTCTCATATACAAACTTCTCAGATAAGAAATATTCCCTGCAT  300

seq1  TTGGTGTATCTGCATTGTATGAGCCACACTTCATCTTTAACTTAAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATCTGCATTGTATGAGCCACACTTCATCTTTAACTTAAAATCT  350

seq1  GTCTATATATCTATATTTATCTACTTATCTATGAAGTTTCAAATTACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATATCTATATTTATCTACTTATCTATGAAGTTTCAAATTACAAA  400

seq1  TTTTATTTCCTTGACATCAGAAATTGTTACTCTATTTGTTTACTTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCCTTGACATCAGAAATTGTTACTCTATTTGTTTACTTTGAAA  450

seq1  GTTTAGTTGTTTAAACATATTCATTCAGAAAAAAAATAATAATTATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTGTTTAAACATATTCATTCAGAAAAAAAATAATAATTATCAAA  500

seq1  ATTAAACTGTCAGTTTCTTTTGAAAATATAATTTTACTTAATAGAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGTCAGTTTCTTTTGAAAATATAATTTTACTTAATAGAATGAA  550

seq1  TGGGTTTAATAATTTGAAACAGTATAAATAATTTGTCAAAAATTCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAATAATTTGAAACAGTATAAATAATTTGTCAAAAATTCTTTTA  600

seq1  GTAGTTGGTGCATGCATCCCAAGGACACCGAGTCACGTGCAGCAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGTGCATGCATCCCAAGGACACCGAGTCACGTGCAGCAAAGAGA  650

seq1  CTGTGGCTTTCTGCTCCCAGATTTTTTTGCTCACACTTTGAAGAATTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTTCTGCTCCCAGATTTTTTTGCTCACACTTTGAAGAATTATG  700

seq1  GAAAAACAATCAAATACTAACATATGGGTAGGTTTATTGCTGTATACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAATCAAATACTAACATATGGGTAGGTTTATTGCTGTATACCAG  750

seq1  TCAAGTTGAGTATTCAGAGTGGGAACAAGGATCAGATGGTTAGATAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGAGTATTCAGAGTGGGAACAAGGATCAGATGGTTAGATAGGTT  800

seq1  GCTGAAGCCATGTACTGAACTTCAGGTCTAGCCTTGTCTTAGAGATGAGT  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGAAGCCATGTACTGAACTTCACGTCTAGCCTTGTCTTAGAGATGAGT  850

seq1  TACTCCAGGGTAAACATAAATGGCTTAAAGAAGGCACATAAAATAATTCC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTCCAGGGTAAACATAAATGGCTTAAAGAA-GCACATAAAATAATTCC  899

seq1  TTTCATTTATGGCTGACCATCAGTTAACCTGTCAGATTCTTTACGGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATGGCTGACCATCAGTTAACCTGTCAGATTCTTTACGGTATA  949

seq1  CTCTCCAACAGCCAAATAAAGTGTCCTCTTCACGGGAACAGACAATAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAACAGCCAAATAAAGTGTCCTCTTCACGGGAACAGACAATAGGA  999

seq1  AGGAGACCTAATCATACAAAGATGATTGACATCATTTACACAAAAACATT  1050
      | ||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  A-GAGACCTAATCATAC-AAGATGA-TGACATCATTTACACAAAAACATT  1046

seq1  GGTCCATAATTTACAAAAAGATATATGAGGAATAGGTAGTGAAAGATAGA  1100
      ||| ||||||||||||||||| |||||||||||| |||||| |||| |||
seq2  GGTTCATAATTTACAAAAAGAAATATGAGGAATA-GTAGTG-AAGAAAGA  1094

seq1  TTGATGCTAGAAATGTAGAGATAAATTCTTAGATGGTAACTGTTGTTGTA  1150
       ||||||||| ||||||  |  ||| ||||| ||||||||||||||||||
seq2  -TGATGCTAG-AATGTAAGG--AAAATCTTAAATGGTAACTGTTGTTGTA  1140

seq1  ATATTTTGAAATCTAATTTG-TTAGTTAATTCAACATGCAAATAATAAAT  1199
      |   |||||||||||||||| |||||| |||| |||||| ||||||||| 
seq2  A---TTTGAAATCTAATTTGTTTAGTT-ATTCCACATGC-AATAATAAA-  1184

seq1  TATTACAACTATACAATTGAAAGACAAATATTACATTTAGTTAGGAAAGA  1249
      |||||||  ||| | ||||  ||||||||     | |||||  |||||||
seq2  TATTACACTTAT-CCATTG--AGACAAAT----TAATTAGT--GGAAAGA  1225

seq1  ACAGAATTTGTTTCC  1264
      |||||  ||||||||
seq2  ACAGA--TTGTTTCC  1238

seq1: chr3_48515524_48516508
seq2: B6Ng01-088P08.g_67_1039 (reverse)

seq1  CACCACCACCACCCCCACTCCATGCCTGCCTCT-TCTCTTCTTCCCTCTT  49
      |||||||||| |||||||| |||| ||| |||| ||||||| ||     |
seq2  CACCACCACC-CCCCCACT-CATG-CTG-CTCTCTCTCTTCCTC-----T  41

seq1  TTTCTCCCTCTTTCTCCATACTGACATTCCTGCCCCTTCTTTCTTTCCCT  99
      ||||| ||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTTCT-CCTCTTTCTCCATACTGACATTCCTG--CCTTCTTTCTTTCCCT  88

seq1  CCATTCCTTCCTGAAATTCCTGCTCTCCAGCCTTCTTTCTTTCCCCCCTC  149
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  CCATTCCTT-CTGAAATTCATGCTCTCCAGCCTTCTTTCTTTCCCCCCTC  137

seq1  CATAGTACTGAACCTAAAGCTTTGTCCACAATGAGGAATCTCTCTAGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACTGAACCTAAAGCTTTGTCCACAATGAGGAATCTCTCTAGCAT  187

seq1  TGATCTACCCCATGGCCTTATCTTGTTTTCTTATTTCTTTAGTATATGTT  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATCTACCCCATGGCCTTATCTTGTTTTCTTATTTCTCTAGTATATGTT  237

seq1  ATCATAATCACTGGAATTAAAGTGTTTGATTGTGAATGATACTTTATGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATCACTGGAATTAAAGTGTTTGATTGTGAATGATACTTTATGTT  287

seq1  TGGTTATATCTGTCCCTTTATTGTATTTCCCTTCCCCTCAACTCTGTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATCTGTCCCTTTATTGTATTTCCCTTCCCCTCAACTCTGTCTC  337

seq1  TAATATATTCCTCTATTAGTCTCTGTTCTATTTCAATATTTTCTCTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTCCTCTATTAGTCTCTGTTCTATTTCAATATTTTCTCTCTCT  387

seq1  CCCTCTGTCTTTGTCTCTGTGAGTGACCTCTCTTTGTCTCGCTATCACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTCTTTGTCTCTGTGAGTGACCTCTCTTTGTCTCGCTATCACTG  437

seq1  TCTATGTCACTCTTTCATTTATATTCCATGTACAAAAGGGAATTGATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCACTCTTTCATTTATATTCCATGTACAAAAGGGAATTGATATT  487

seq1  TTTGCCTTTCTGAGTCTGAGTTCTTTCCCTAAATATGATGTTTTGTAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTCTGAGTCTGAGTTCTTTCCCTAAATATGATGTTTTGTAGGT  537

seq1  CCTACTTTTGTGTCGTCAATAACATGGTTACATTTTGCTTATTTTTAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTGTGTCGTCAATAACATGGTTACATTTTGCTTATTTTTAGTT  587

seq1  AAAACTTTATTATAAAGAACTGCACATTAATAAACATCATACAATGAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTATTATAAAGAACTGCACATTAATAAACATCATACAATGAAAT  637

seq1  GAACCAGACCCAAAGCCAAAACATTCTTCATGATTGAATAATGCTCAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGACCCAAAGCCAAAACATTCTTCATGATTGAATAATGCTCAACT  687

seq1  GCATATATGTAATACATTTTAATGTCATTTCTCTGAAATCTTTCTCACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATGTAATACATTTTAATGTCATTTCTCTGAAATCTTTCTCACAT  737

seq1  GACCCTGACCATCGTCTTTCTAGGAAGATTCAGTGAAATGCCCCCAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACCATCGTCTTTCTAGGAAGATTCAGTGAAATGCCCCCAGTTC  787

seq1  TATGACTCTATCTTCTGTAGAAAATATCCTTTAAAAGCTCAGACTGGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTCTATCTTCTGTAGAAAATATCCTTTAAAAGCTCAGACTGGGAT  837

seq1  CACTCAGGAAAGCCTGTCTACCTGAAGTCAGTAGTACCAGTTAATAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAAAGCCTGTCTACCTGAAGTCAGTAGTACCAGTTAATAAGTC  887

seq1  GGATGCTGGGAACAAAAATATCCTCTTCATAGCTAGGGCATGTGCAGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGGGAACAAAAATATCCTCTTCATAGCTAGGGCATGTGCAGTAG  937

seq1  AGAGTGCATGCTACCTTTGGGGAAATCTTAGAATTC  985
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCATGCTACCTTTGGGGAAATCTTAGAATTC  973