BAC Information

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BAC

Clone NameB6Ng01-089A06
Chromosome3 (Build37)
Map Location 109,076,488 - 109,200,391
singlet/doubletdoublet
Overlap geneVav3
Upstream genePsma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A06.bB6Ng01-089A06.g
ACCDH901711DH901712
length1,2401,096
definitionDH901711|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A06, 5' end.DH901712|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,076,488 - 109,077,731)(109,199,273 - 109,200,391)
sequence
gaattctttgtctccattgcagacagtatctgaatatgtcaacaatggtt
tcagatgagtcttccaacatcagctgtgactcaccctttctgaccttcag
tccgcactctcattgcagggagtctgtttcatgaaagattcatggagaag
attactccagggcaacgcacacagaatgaacgatgctgctttgatgtgtt
aagctatcttccttccttaaagattgccaggcaaaaaatagccattaaaa
aaaaaaagcattcttaggaaggatgctcgcttgattggcaccagtactta
aatatgcatggcagacctgagatctttcttcttgtaagtagcaataaaac
agtgttccctgataaatcctgcaaaagcattgacatggtctgagtgctct
acttgcaatacagggagcaatgccatcgctcacctgaattactgaagccc
gctaatatgtgcatgcctctcgttgctgtgtttgcactccagtttcttta
gagcaggggttttcaactgtcatgcaaggcttgaacccatcataggcaca
aaactaaatatttactccacagatgagaataatctggactataaccaaac
attagtagtaatagtactggtagcagcagtagcagcagccatccaaccct
tcctacacttgacactcctctcaacacttaacaataatgcatttaatgct
cacaagaaactttacaaaatacattgttgtctgtgccatgttcagatagg
gaaactgaagtaccaaagagagggaacttgcctaccaacccaggaactgt
aagtggtggctgggcttcagactcatgttcttgataaagtgctagcgtga
tataaatgcgctcccatcttttgcttgctcagacacttctgcctgtcctt
tattctccgggttaagtttcttcttttctgcagcctttgtgctttgttct
aacaactcctgcaagaagttgctgctttgtctgtgctctagaacctctct
caatacacccggatagtacaccactgttgtaatttgcggacgcaccccat
tgtttctgctagttattgagaacacgtgtctgttaattcttggtctcttt
gagggataagagcctagaggaccatcattaattcctatggttgggctgga
aataacgtgtgcttaacccttggaagattatgagatacatgcatttaccc
gaacagaagacttatagaccaagatgatctgtctgtatcc
gaattcagggcagcaactcaaagcaggaacctaaaggcaggaactgaagc
agaagccagggagaagtgatgtttaatggctctcctccctaccacatccc
agggcttgcttgctcagcctgctttcttatacaacccaggggtagcactc
cagacggtaggctgggccttcccacatcaatcataaatttggaatatgtt
ccacagagttacctgcaggtcagtctaatagaggcatttctctttcccat
gacccttgctatgtcagcagaaaaaaactgacaaaacctaatgagtatct
atgtccctctttaccttagttaatgcctgaccttagactactatacatat
atatattttttaatttctaggtacataccctggatacatccacaactaga
ctcagagactcagacagtggaaataagtgatgcttcaagcaaatgcccca
cattgcgtacccacaattgctcccttcaagttgctgctaaagaactctct
tgttaaataaaatccttgtaacactttgtatcaatgaaggtttatgctga
cacccagatgacagcccactgagaacaatgaaatgggaaatatttcaaaa
agtatattgatggagcacatcaatttttcagctggttcaattctattgat
ttttatgaaataatttaatcactcatgtgtcattccagatacttttgttt
tactgcaatattgttaagttataaaatctttcattttcttcatcaattaa
agacatttcctttaaaaggggaggtctcagcaagagtcaccccatagcag
cctgccccgcccgcatctctggcacactcccactggggatgtctggtttc
cctcctccgatctccctacacctcatctgccacctctatgcccttctcct
ctctctcccatccagttttctccctcatcaccttcatatattgtagtttc
ccttctgagactcctagcagtgggaataaagatcctggggcagtcacttc
tgtagccagcagacactcaaaggagaataggacgaacaccacaactttca
cccaaatgtgtctgcctacaaatgtgcagacaagaccagaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109076488_109077731
seq2: B6Ng01-089A06.b_41_1280

seq1  GAATTCTTTGTCTCCATTGCAGACAGTATCTGAATATGTCAACAATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCTCCATTGCAGACAGTATCTGAATATGTCAACAATGGTT  50

seq1  TCAGATGAGTCTTCCAACATCAGCTGTGACTCACCCTTTCTGACCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGTCTTCCAACATCAGCTGTGACTCACCCTTTCTGACCTTCAG  100

seq1  TCCGCACTCTCATTGCAGGGAGTCTGTTTCATGAAAGATTCATGGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCACTCTCATTGCAGGGAGTCTGTTTCATGAAAGATTCATGGAGAAG  150

seq1  ATTACTCCAGGGCAACGCACACAGAATGAACGATGCTGCTTTGATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCAGGGCAACGCACACAGAATGAACGATGCTGCTTTGATGTGTT  200

seq1  AAGCTATCTTCCTTCCTTAAAGATTGCCAGGCAAAAAATAGCCATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCTTCCTTCCTTAAAGATTGCCAGGCAAAAAATAGCCATTAAAA  250

seq1  AAAAAAAGCATTCTTAGGAAGGATGCTCGCTTGATTGGCACCAGTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCATTCTTAGGAAGGATGCTCGCTTGATTGGCACCAGTACTTA  300

seq1  AATATGCATGGCAGACCTGAGATCTTTCTTCTTGTAAGTAGCAATAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATGGCAGACCTGAGATCTTTCTTCTTGTAAGTAGCAATAAAAC  350

seq1  AGTGTTCCCTGATAAATCCTGCAAAAGCATTGACATGGTCTGAGTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCCTGATAAATCCTGCAAAAGCATTGACATGGTCTGAGTGCTCT  400

seq1  ACTTGCAATACAGGGAGCAATGCCATCGCTCACCTGAATTACTGAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAATACAGGGAGCAATGCCATCGCTCACCTGAATTACTGAAGCCC  450

seq1  GCTAATATGTGCATGCCTCTCGTTGCTGTGTTTGCACTCCAGTTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATGTGCATGCCTCTCGTTGCTGTGTTTGCACTCCAGTTTCTTTA  500

seq1  GAGCAGGGGTTTTCAACTGTCATGCAAGGCTTGAACCCATCATAGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGGTTTTCAACTGTCATGCAAGGCTTGAACCCATCATAGGCACA  550

seq1  AAACTAAATATTTACTCCACAGATGAGAATAATCTGGACTATAACCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATATTTACTCCACAGATGAGAATAATCTGGACTATAACCAAAC  600

seq1  ATTAGTAGTAATAGTACTGGTAGCAGCAGTAGCAGCAGCCATCCAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGTAATAGTACTGGTAGCAGCAGTAGCAGCAGCCATCCAACCCT  650

seq1  TCCTACACTTGACACTCCTCTCAACACTTAACAATAATGCATTTAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACTTGACACTCCTCTCAACACTTAACAATAATGCATTTAATGCT  700

seq1  CACAAGAAACTTTACAAAATACATTGTTGTCTGTGCCATGTTCAGATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAACTTTACAAAATACATTGTTGTCTGTGCCATGTTCAGATAGG  750

seq1  GAAACTGAAGTACCAAAGAGAGGGAACTTGCCTACCAACCCAGGAACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAGTACCAAAGAGAGGGAACTTGCCTACCAACCCAGGAACTGT  800

seq1  AAGTGGTGGCTGGGCTTCAGGACTCATGTTCTTGATAAAGTGCTAGCGTG  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTGGTGGCTGGGCTTCA-GACTCATGTTCTTGATAAAGTGCTAGCGTG  849

seq1  ATATAAATGCGCTCCCATCTTTTGCTTGCTCAGACACTTCTGCCTGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGCGCTCCCATCTTTTGCTTGCTCAGACACTTCTGCCTGTCCT  899

seq1  TTATTCTCCGGTTTAAGTTTCTTCTTTTCTGCAGGCCTTTGTGCTTTTGT  950
      ||||||||||| ||||||||||||||||||||| |||||||||| |||||
seq2  TTATTCTCCGGGTTAAGTTTCTTCTTTTCTGCA-GCCTTTGTGC-TTTGT  947

seq1  TCTAACAACTCCTGCAAGAAGTTGCTGCTTTGTCTGTGCTCTAGAACCT-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTAACAACTCCTGCAAGAAGTTGCTGCTTTGTCTGTGCTCTAGAACCTC  997

seq1  TCTCACATACACCGGGATAGTAACCACACTGTTGATATTTGCGGACGCA-  1048
      ||||| ||||||| ||||||| ||  ||||||||  ||||||||||||| 
seq2  TCTCA-ATACACCCGGATAGT-ACACCACTGTTGTAATTTGCGGACGCAC  1045

seq1  CCCATTG-TTCTGCTAGTTAATGAGAGCACGTG-CTGTTATTTCTTTGTC  1096
      ||||||| |||||||||||| ||||| |||||| |||||| ||||| |||
seq2  CCCATTGTTTCTGCTAGTTATTGAGAACACGTGTCTGTTAATTCTTGGTC  1095

seq1  TCTATGAGGCATAAAGAG-CTAGA-GACCATCTATAATTCCTATTGTTGT  1144
      ||| ||||| || ||||| ||||| |||||||  |||||||||| |||| 
seq2  TCTTTGAGGGAT-AAGAGCCTAGAGGACCATCATTAATTCCTATGGTTGG  1144

seq1  GCT-GAGATAGCTGTTGCCTAACTCTTGGAAGATTTATAGATACATGCAT  1193
      ||| || ||| |   ||| |||| |||||||||||   ||||||||||||
seq2  GCTGGAAATAACGTGTGCTTAACCCTTGGAAGATTATGAGATACATGCAT  1194

seq1  TTACCCCAGATAGAGCACTTATAGACCAAAGAAATGATTCTGTCTGAATC  1243
      |||||| | | |||  ||||||||||||   | |||| |||||||| |||
seq2  TTACCCGA-ACAGAAGACTTATAGACCA---AGATGA-TCTGTCTGTATC  1239

seq1  C  1244
      |
seq2  C  1240

seq1: chr3_109199273_109200391
seq2: B6Ng01-089A06.g_68_1163 (reverse)

seq1  TCCTCCTCTGCTCTTTGTCCTTGCACATCTTGTAGGCAGGACACATTTTG  50
      |||||||||| || |||||  ||||||| ||||||||| |||||||||  
seq2  TCCTCCTCTGGTC-TTGTC--TGCACAT-TTGTAGGCA-GACACATTT--  43

seq1  GGTTGAAAGTTTGTGGGTTGGTTTCTGTCCTTATTCCTCCTTTGGGTGTC  100
      || |||||| ||||||  ||  ||| |||| |||| |||||||| |||| 
seq2  GGGTGAAAG-TTGTGG--TG--TTC-GTCC-TATT-CTCCTTTGAGTGT-  84

seq1  CTGCTTGGCTACAGGAAGTGACTGCCCCAGGATCTATATTTCCCACTGCT  150
      |||| |||||||| ||||||||||||||||||||| || |||||||||||
seq2  CTGC-TGGCTACA-GAAGTGACTGCCCCAGGATCTTTA-TTCCCACTGCT  131

seq1  AGGAGTCTCAGAAGGGAAACTACAATAATATTGAAGGTGGATGGAGGGAG  200
      |||||||||||||||||||||||||| ||| ||||||| ||| |||||||
seq2  AGGAGTCTCAGAAGGGAAACTACAAT-ATA-TGAAGGT-GAT-GAGGGAG  177

seq1  AAAACTGGATGGGAGAGAGAGGAGAAGGGCATAGAGGTGGCAGATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGATGGGAGAGAGAGGAGAAGGGCATAGAGGTGGCAGATGAGGT  227

seq1  GTAGGGAGATCGGAGGAGGGAAACCAGACATCCCCAGTGGGAGTGTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAGATCGGAGGAGGGAAACCAGACATCCCCAGTGGGAGTGTGCCA  277

seq1  GAGATGCGGGCGGGGCAGGCTGCTATGGGGTGACTCTTGCTGAGACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCGGGCGGGGCAGGCTGCTATGGGGTGACTCTTGCTGAGACCTCC  327

seq1  CCTTTTAAAGGAAATGTCTTTAATTGATGAAGAAAATGAAAGATTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAGGAAATGTCTTTAATTGATGAAGAAAATGAAAGATTTTATA  377

seq1  ACTTAACAATATTGCAGTAAAACAAAAGTATCTGGAATGACACATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACAATATTGCAGTAAAACAAAAGTATCTGGAATGACACATGAGTG  427

seq1  ATTAAATTATTTCATAAAAATCAATAGAATTGAACCAGCTGAAAAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTATTTCATAAAAATCAATAGAATTGAACCAGCTGAAAAATTGA  477

seq1  TGTGCTCCATCAATATACTTTTTGAAATATTTCCCATTTCATTGTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCATCAATATACTTTTTGAAATATTTCCCATTTCATTGTTCTCA  527

seq1  GTGGGCTGTCATCTGGGTGTCAGCATAAACCTTCATTGATACAAAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTCATCTGGGTGTCAGCATAAACCTTCATTGATACAAAGTGTT  577

seq1  ACAAGGATTTTATTTAACAAGAGAGTTCTTTAGCAGCAACTTGAAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATTTTATTTAACAAGAGAGTTCTTTAGCAGCAACTTGAAGGGAG  627

seq1  CAATTGTGGGTACGCAATGTGGGGCATTTGCTTGAAGCATCACTTATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTGGGTACGCAATGTGGGGCATTTGCTTGAAGCATCACTTATTTC  677

seq1  CACTGTCTGAGTCTCTGAGTCTAGTTGTGGATGTATCCAGGGTATGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGAGTCTCTGAGTCTAGTTGTGGATGTATCCAGGGTATGTACC  727

seq1  TAGAAATTAAAAAATATATATATGTATAGTAGTCTAAGGTCAGGCATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAAAAATATATATATGTATAGTAGTCTAAGGTCAGGCATTAA  777

seq1  CTAAGGTAAAGAGGGACATAGATACTCATTAGGTTTTGTCAGTTTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTAAAGAGGGACATAGATACTCATTAGGTTTTGTCAGTTTTTTTC  827

seq1  TGCTGACATAGCAAGGGTCATGGGAAAGAGAAATGCCTCTATTAGACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATAGCAAGGGTCATGGGAAAGAGAAATGCCTCTATTAGACTGA  877

seq1  CCTGCAGGTAACTCTGTGGAACATATTCCAAATTTATGATTGATGTGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGTAACTCTGTGGAACATATTCCAAATTTATGATTGATGTGGGA  927

seq1  AGGCCCAGCCTACCGTCTGGAGTGCTACCCCTGGGTTGTATAAGAAAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGCCTACCGTCTGGAGTGCTACCCCTGGGTTGTATAAGAAAGCA  977

seq1  GGCTGAGCAAGCAAGCCCTGGGATGTGGTAGGGAGGAGAGCCATTAAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCAAGCAAGCCCTGGGATGTGGTAGGGAGGAGAGCCATTAAACA  1027

seq1  TCACTTCTCCCTGGCTTCTGCTTCAGTTCCTGCCTTTAGGTTCCTGCTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCCCTGGCTTCTGCTTCAGTTCCTGCCTTTAGGTTCCTGCTTT  1077

seq1  GAGTTGCTGCCCTGAATTC  1119
      |||||||||||||||||||
seq2  GAGTTGCTGCCCTGAATTC  1096