BAC Information

Click to search

BAC

Clone NameB6Ng01-089C06
Chromosome3 (Build37)
Map Location 94,370,570 - 94,371,648
singlet/doubletsinglet
Overlap geneSnx27
Upstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4
Downstream geneLOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C06.bB6Ng01-089C06.g
ACCDH901794DH901795
length1,075490
definitionDH901794|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C06, 5' end.DH901795|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacaaatatgtgaccaaagaaataaaactgaatgttaatgacag
aatcaggagggtaagtcccgaggctggagagaagtaacagctctgcaggt
aagagtattcactgctctttcaagaggacctgagttcagtcgccagcacc
cacacccatcagctcacaactgcctataaccctagctccttcaacacctg
cgtgcatgggtgtacctatacataaacatcatctacatgcacaactgcat
tcatacacatactttaatataattgtgaataaataagtacattttttaaa
gatgctaagcctacaggtactcattttacaatcctttcaacttctctgtg
tttgaaattttccataagaaaatgttttataataaaacccataaataaga
cctgagttttatttgggaatctaagtgatattcaaattacctggatgttt
tcagcattgtaaagatgcacttgataattttaaagaaagcctcattttta
ctttgaaatcaatgtttagctccaatggagacatttttagctagctaatg
gaagtggcttcaaatagtacaactaaagttagccagctgaggaaattacg
aagctaatataaacacttccagaagcagaagagaagctctggtcaggatt
tatactctgcttctgaaggaagctagacataatggaacaaggtttggaca
aaaacataacaaagcaaacttctgtataaaccagggaaaggagccatttc
taccccacaagcacaatactatgtgacccctggtgacatacacgagtgac
taaatggcaattaatcctcagaagcagtcctttaaacacagccaatagac
tcatgcaattgtaagcagtaagatgctttccaactttatacattaaacac
aatggcaatgtgccacaagtgcctaaattttaacaagtgacaggacacag
aagcttggtgggtaaaagcacttgctatataagcataaatgcctggtgtt
caaatcccagcattcatgtaaaagccagagcagctgcaaggttgcagtgt
ctataaattcagtgggtgagaagga
tctccctctcctcggtggtaaacagggtctgcagaagctgctgtcaatca
tcccaggtaggctggtgggagtacatcagagactctatcagccctttgag
ccaggcaggattttctgagaaagggagggtgattgaccttccagttatag
agatcagaagaggaaaagggccaatactgcagaagttgtagaccattctg
gttggacgggcgagcccccacatccctgagaggaagtgctacggttgtgt
cagctagcccctctgaagtggctccccgcagacgtctcattccagctgag
ggacctcttatcccggtccccgcagctgaaagaggggccgggagagatga
gggttgggccagaggatagggtggaggtggggggtcaggccactcagggg
gctcctctatctctgggtagatcttggggacaaccgccgatagggtagtg
ttcttgctgtttccctcaggctgtattttcgatttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94370570_94371648
seq2: B6Ng01-089C06.b_45_1119

seq1  GAATTCAACAAATATGTGACCAAAGAAATAAAACTGAATGTTAATGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATATGTGACCAAAGAAATAAAACTGAATGTTAATGACAG  50

seq1  AATCAGGAGGGTAAGTCCCGAGGCTGGAGAGAAGTAACAGCTCTGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAGGGTAAGTCCCGAGGCTGGAGAGAAGTAACAGCTCTGCAGGT  100

seq1  AAGAGTATTCACTGCTCTTTCAAGAGGACCTGAGTTCAGTCGCCAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTCACTGCTCTTTCAAGAGGACCTGAGTTCAGTCGCCAGCACC  150

seq1  CACACCCATCAGCTCACAACTGCCTATAACCCTAGCTCCTTCAACACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATCAGCTCACAACTGCCTATAACCCTAGCTCCTTCAACACCTG  200

seq1  CGTGCATGGGTGTACCTATACATAAACATCATCTACATGCACAACTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATGGGTGTACCTATACATAAACATCATCTACATGCACAACTGCAT  250

seq1  TCATACACATACTTTAATATAATTGTGAATAAATAAGTACATTTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACATACTTTAATATAATTGTGAATAAATAAGTACATTTTTTAAA  300

seq1  GATGCTAAGCCTACAGGTACTCATTTTACAATCCTTTCAACTTCTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAGCCTACAGGTACTCATTTTACAATCCTTTCAACTTCTCTGTG  350

seq1  TTTGAAATTTTCCATAAGAAAATGTTTTATAATAAAACCCATAAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTTTCCATAAGAAAATGTTTTATAATAAAACCCATAAATAAGA  400

seq1  CCTGAGTTTTATTTGGGAATCTAAGTGATATTCAAATTACCTGGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTTATTTGGGAATCTAAGTGATATTCAAATTACCTGGATGTTT  450

seq1  TCAGCATTGTAAAGATGCACTTGATAATTTTAAAGAAAGCCTCATTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTGTAAAGATGCACTTGATAATTTTAAAGAAAGCCTCATTTTTA  500

seq1  CTTTGAAATCAATGTTTAGCTCCAATGGAGACATTTTTAGCTAGCTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATCAATGTTTAGCTCCAATGGAGACATTTTTAGCTAGCTAATG  550

seq1  GAAGTGGCTTCAAATAGTACAACTAAAGTTAGCCAGCTGAGGAAATTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCTTCAAATAGTACAACTAAAGTTAGCCAGCTGAGGAAATTACG  600

seq1  AAGCTAATATAAACACTTCCAGAAGCAGAAGAGAAGCTCTGGTCAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATATAAACACTTCCAGAAGCAGAAGAGAAGCTCTGGTCAGGATT  650

seq1  TATACTCTGCTTCTGAAGGAAGCTAGACATAATGGAACAAGGTTTGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTGCTTCTGAAGGAAGCTAGACATAATGGAACAAGGTTTGGACA  700

seq1  AAAACATAACAAAGCAAACTTCTGTATAAACCAGGGAAAGGAGCCATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAACAAAGCAAACTTCTGTATAAACCAGGGAAAGGAGCCATTTC  750

seq1  TACCCCACAAGCACAATACTATGTGACCCCTGGTGACATACACGAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCACAAGCACAATACTATGTGACCCCTGGTGACATACACGAGTGAC  800

seq1  TAAATGGCAATTAATCCTCAGAAGCAGTCCTTTAAACACAGCCAATAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCAATTAATCCTCAGAAGCAGTCCTTTAAACACAGCCAATAGAC  850

seq1  TCATGCAATTGTAAGCAGTAAGATGCTTTCCAACTTTATACATTAAAACA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATGCAATTGTAAGCAGTAAGATGCTTTCCAACTTTATACATT-AAACA  899

seq1  CAATGGCAATGTGCCACAAGTGCCTAAATTTTAACAAGTGACAAGGACAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATGGCAATGTGCCACAAGTGCCTAAATTTTAACAAGTGAC-AGGACAC  948

seq1  AAGAAGGCTTGGTGGGTAAAAAGCACTTGCTATATAAGCATAAATGCCT-  999
       |||| ||||||||||| ||||||||||||||||||||||||||||||| 
seq2  -AGAA-GCTTGGTGGGT-AAAAGCACTTGCTATATAAGCATAAATGCCTG  995

seq1  GTGTTCAAATCCCAGCATTCATGTAAAAAGCCAAGAGCAGCTGCAAGGTT  1049
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GTGTTCAAATCCCAGCATTCATGT-AAAAGCC-AGAGCAGCTGCAAGGTT  1043

seq1  GCAAGTGTCTATAAATCCAGTG---GTGAAGGA  1079
      || ||||||||||||| |||||   | ||||||
seq2  GC-AGTGTCTATAAATTCAGTGGGTGAGAAGGA  1075