BAC Information

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BAC

Clone NameB6Ng01-089D12
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,224 - 41,059,73768,331,361 - 68,331,888
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D12.bB6Ng01-089D12.g
ACCDH901853DH901854
length958973
definitionDH901853|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D12, 5' end.DH901854|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(68,331,361 - 68,331,888)
sequence
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctcgagtccaccttcttgagttctttatatatatatattggatattag
tcccctatctgatttagtataggtaaagatcctttcccaatctgttggtg
gcctttttgtcttattgatggtatcttttgccttatggaagctttgcagt
ttcttgaggtcccatttgtcaattctccatcttacagcacaagccattgc
tgttctattcaggaatttttcccctgtgcccaactcttcgaggcttttcc
ccactttcttctctataagtttcagtgtctctggttttatgtggagttcc
ttgatccatttagatttgaccttagtacaaggagataggaatgtatcaat
tcgcattcttctacatgataaccaccagttgtgccagcaacattttttga
aaatgctgtctttttccactggatggttttagctcccttgtcgaagatca
agtgaccataggtgtgtgggttcatttctgggtcttcaattctattccat
tggtctacttgtctgtcactatatcagtaccttgcaatttttatcacaat
tgctctgtagtaaagctttaggtcaggcatggtgattccactagaggttc
ttttatccttgagaagagtttttgctatcctagatttttttttgttattc
cagatgaatttgaacattgctctttcttattcattgaagaattgagttgg
aattttgatggggattgcattgaatctgtagatcgattttggcaagatag
ccatttttacagtgttgaccctgccaacccatgagcatgggagatctatc
catcttctgagatcttcttaatttctttcttcagagacttgaagttctta
tcatacagatctttcacttccctagtagagtcacaccaaggtattttata
ttatttgt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgatcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggtaattctttgaa
tagtcttcttgtttccccttggttgatttcaccccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttccttttttctagagct
tttagatgtgtgtcaagctgctagtatgtgctctctcccgtttctttatg
gagcactagagctatggagtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-089D12.b_45_562 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||| ||||||||||||||||||| ||||| |||||||||||||||| ||
seq2  GTGG-AAAAAGACAGCATTTTCAAAAAATGTTGCTGGCACAACTGGTGGT  99

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  TATCATGTAGAAGAATGCGAATTGATACATTCCTATCTCCTTGTACTAAG  149

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAATGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  199

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||| ||||||||||||||||||| |||||  ||| ||||||||
seq2  ACTTATAGAGAAGAAAGTGGGGAAAAGCCTCGAAGAGTTGGGCACAGGGG  249

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| |||||||||||||||||||||||||||||| |||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATGGAGAATT  299

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      |||||||||||||||| ||||||||||||||||   ||||||||||| ||
seq2  GACAAATGGGACCTCAAGAAACTGCAAAGCTTCCATAAGGCAAAAGATAC  349

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCT  399

seq1  ATCCTAAATCAGATAGGGGACTAATATCCA----ATATATATCAAGAACT  445
      || |||||||||||||||||||||||||||    |||||||| |||||||
seq2  ATACTAAATCAGATAGGGGACTAATATCCAATATATATATATAAAGAACT  449

seq1  CAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  495
      |||||||||||| || |||||||||||||||||| |||||| ||||||||
seq2  CAAGAAGGTGGACTCGAGAAAATCAAATAACCCCCTTAAAAGATGGGGCT  499

seq1  CAGAGCTAAACAAAGAATT  514
      |||||||||||||||||||
seq2  CAGAGCTAAACAAAGAATT  518

seq1: chr7_68331361_68331888
seq2: B6Ng01-089D12.g_69_596 (reverse)

seq1  ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAAT  50

seq1  AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT  100

seq1  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTC  150

seq1  ACAAGATAGAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACT  200

seq1  ATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT  250

seq1  CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTC  300

seq1  TCGCTAACCGAATCCAAGATCACATTAAAGCAATCATCCATCCTGACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAACCGAATCCAAGATCACATTAAAGCAATCATCCATCCTGACCAA  350

seq1  GTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCAT  400

seq1  CAATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCA  450

seq1  TCTCGTTGGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTGGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG  500

seq1  ATAAAAGTTCTGGAAAGATCAGGAATTC  528
      ||||||||||||||||||||||||||||
seq2  ATAAAAGTTCTGGAAAGATCAGGAATTC  528