BAC Information

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BAC

Clone NameB6Ng01-089H02
Chromosome3 (Build37)
Map Location 29,425,274 - 29,489,524
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089H02.bB6Ng01-089H02.g
ACCDH902018DH902019
length2971,165
definitionDH902018|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H02, 5' end.DH902019|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,425,274 - 29,425,570)(29,488,378 - 29,489,524)
sequence
cattagagatcaaataagctgacttgacatcatatgttttacacaaggaa
actggtaactacacatgcaaatcaatgattagagaagattcaagtcccag
aatgcaaggagcaggaactccaagccagttatctggttattcataacata
gttccttagactataaataaccatcacatttaaaggcctgattgatcact
ggaaaacgcattaaacctgcagccaagagaactgggcaagttgcatttca
ttaccattgtctttatgaaaagtgagttgagcaggggaggggggagg
gaattcccccactcactgctaacaccatcacagtagcatttgggtgtaaa
gcaggccatctcacagactctgagcctcttttcctccgatgctaaatttg
agtttgtatcttcttctacaacctagtattttcaatactcaactattgtt
ctctaaggtgctggagagtgtgaagtcagagaccaaggcggcactcactg
gtcagtatctactgaggttccactatttgtatcctcatggaaggctgcag
tgagactccttcagaatgacattaattacaattactaatgctctacccag
attgcctactcacatcccccaaattcccagctcctaatacaataatctca
gaggttattatctccacacagaaatttgagacatgtacacattcagaaca
caacctctcagatgtacaaaaaatatgtgcaagaagctatggatcatcaa
aacaaatttagatgtacagtgactacccacctattattgtatttaatcct
aagagagagagagagagagagagagagagagagagagagagagacagaga
gagacagagagagacagagagagacagagagagacagggagagagacaga
gacagagagagagaaagagagagtttatctgaatcatcactttttctcac
aggctccattctgagaaactgaactatttatagataaggaactagatcaa
actacataatctgcatataagataaccttgtagtaaagttgttaacattt
ttagtctgaaatgaggcaaaagatactgccccaacacatattcttcccag
agtacctccccctcaaatcccgagtgtcatgatacatattcataaatgag
gaatgttaaactaacatgttacgttttttagttacacagaaataaaactc
tctcacgggtcagcattttctacattgaatcagtactttgttgggaaatt
gatgggaagtagacaacataataaacaacataatagctaaaactcattgg
gtcgggagccatgattactagacttctgttgaatgccagtatgaggttta
ttgttcttttattttaaaggttatctttatacggggaatggtacacaatg
gaactatgaagtctagcttaggccaacatgggaaaaatgattggttctct
tatattatagctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29425274_29425570
seq2: B6Ng01-089H02.b_51_347

seq1  CATTAGAGATCAAATAAGCTGACTTGACATCATATGTTTTACACAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGATCAAATAAGCTGACTTGACATCATATGTTTTACACAAGGAA  50

seq1  ACTGGTAACTACACATGCAAATCAATGATTAGAGAAGATTCAAGTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAACTACACATGCAAATCAATGATTAGAGAAGATTCAAGTCCCAG  100

seq1  AATGCAAGGAGCAGGAACTCCAAGCCAGTTATCTGGTTATTCATAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGGAGCAGGAACTCCAAGCCAGTTATCTGGTTATTCATAACATA  150

seq1  GTTCCTTAGACTATAAATAACCATCACATTTAAAGGCCTGATTGATCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAGACTATAAATAACCATCACATTTAAAGGCCTGATTGATCACT  200

seq1  GGAAAACGCATTAAACCTGCAGCCAAGAGAACTGGGCAAGTTGCATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACGCATTAAACCTGCAGCCAAGAGAACTGGGCAAGTTGCATTTCA  250

seq1  TTACCATTGTCTTTATGAAAAGTGAGTTGAGCAGGGGAGGGGGGAGG  297
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTGTCTTTATGAAAAGTGAGTTGAGCAGGGGAGGGGGGAGG  297

seq1: chr3_29488378_29489524
seq2: B6Ng01-089H02.g_70_1234 (reverse)

seq1  AAAAGC-CTAATATAA-AGAA-CAATCAATTTTCCTATGTT-GCCT-AGC  45
      ||||||  |||||||| |||| |||||| |||||| ||||| |||| |||
seq2  AAAAGCTATAATATAAGAGAACCAATCATTTTTCCCATGTTGGCCTAAGC  50

seq1  T-GACTTCATAGTT-CATTGTGTAACAATCACCGTAT-AAGATAAACTTT  92
      | |||||||||||| ||||||||| || || |||||| ||||||| ||||
seq2  TAGACTTCATAGTTCCATTGTGTACCATTCCCCGTATAAAGATAACCTTT  100

seq1  AAAATAAA--GACAATAAA-CTCATAACTGGCATTCAACAGAAGTCTAGT  139
      ||||||||   |||||||| ||||| ||||||||||||||||||||||||
seq2  AAAATAAAAGAACAATAAACCTCAT-ACTGGCATTCAACAGAAGTCTAGT  149

seq1  AAATCATGGCT-CCGA-CCAATGAGTTTTAGCTATTATG-TGTTTATTAT  186
       |||||||||| |||| |||||||||||||||||||||| ||||||||||
seq2  -AATCATGGCTCCCGACCCAATGAGTTTTAGCTATTATGTTGTTTATTAT  198

seq1  G-TGTCTACT--CCATC-ATTTCCCAACAAAGTACTGATTCAATGTAG-A  231
      | ||||||||  ||||| |||||||||||||||||||||||||||||| |
seq2  GTTGTCTACTTCCCATCAATTTCCCAACAAAGTACTGATTCAATGTAGAA  248

seq1  AATGCTGA-CCGTGAGAGAGTTTTAATTCTGTGTAACTAAAAAACGTAAC  280
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AATGCTGACCCGTGAGAGAGTTTTATTTCTGTGTAACTAAAAAACGTAAC  298

seq1  ATGTTAGTTTAACATTCCTCATTTATGAATATGTATCATGACACTCGGGA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTTTAACATTCCTCATTTATGAATATGTATCATGACACTCGGGA  348

seq1  TTTGAGGGGGAGGTACTCTGGGAAGAATATGTGTTGGGGCAGTATCTTTT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGGGAGGTACTCTGGGAAGAATATGTGTTGGGGCAGTATCTTTT  398

seq1  GCCTCATTTCAGACTAAAAATGTTAACAACTTTACTACAAGGTTATCTTA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTCAGACTAAAAATGTTAACAACTTTACTACAAGGTTATCTTA  448

seq1  TATGCAGATTATGTAGTTTGATCTAGTTCCTTATCTATAAATAGTTCAGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATTATGTAGTTTGATCTAGTTCCTTATCTATAAATAGTTCAGT  498

seq1  TTCTCAGAATGGAGCCTGTGAGAAAAAGTGATGATTCAGATAAACTCTCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAATGGAGCCTGTGAGAAAAAGTGATGATTCAGATAAACTCTCT  548

seq1  CTTTCTCTCTCTCTGTCTCTGTCTCTCTCCCTGTCTCTCTCTGTCTCTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTCTGTCTCTGTCTCTCTCCCTGTCTCTCTCTGTCTCTCT  598

seq1  CTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  648

seq1  CTCTCTCTCTCTCTCTTAGGATTAAATACAATAATAGGTGGGTAGTCACT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTTAGGATTAAATACAATAATAGGTGGGTAGTCACT  698

seq1  GTACATCTAAATTTGTTTTGATGATCCATAGCTTCTTGCACATATTTTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTAAATTTGTTTTGATGATCCATAGCTTCTTGCACATATTTTTT  748

seq1  GTACATCTGAGAGGTTGTGTTCTGAATGTGTACATGTCTCAAATTTCTGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTGAGAGGTTGTGTTCTGAATGTGTACATGTCTCAAATTTCTGT  798

seq1  GTGGAGATAATAACCTCTGAGATTATTGTATTAGGAGCTGGGAATTTGGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATAATAACCTCTGAGATTATTGTATTAGGAGCTGGGAATTTGGG  848

seq1  GGATGTGAGTAGGCAATCTGGGTAGAGCATTAGTAATTGTAATTAATGTC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGAGTAGGCAATCTGGGTAGAGCATTAGTAATTGTAATTAATGTC  898

seq1  ATTCTGAAGGAGTCTCACTGCAGCCTTCCATGAGGATACAAATAGTGGAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGGAGTCTCACTGCAGCCTTCCATGAGGATACAAATAGTGGAA  948

seq1  CCTCAGTAGATACTGACCAGTGAGTGCCGCCTTGGTCTCTGACTTCACAC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTAGATACTGACCAGTGAGTGCCGCCTTGGTCTCTGACTTCACAC  998

seq1  TCTCCAGCACCTTAGAGAACAATAGTTGAGTATTGAAAATACTAGGTTGT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCACCTTAGAGAACAATAGTTGAGTATTGAAAATACTAGGTTGT  1048

seq1  AGAAGAAGATACAAACTCAAATTTAGCATCGGAGGAAAAGAGGCTCAGAG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGATACAAACTCAAATTTAGCATCGGAGGAAAAGAGGCTCAGAG  1098

seq1  TCTGTGAGATGGCCTGCTTTACACCCAAATGCTACTGTGATGGTGTTAGC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGATGGCCTGCTTTACACCCAAATGCTACTGTGATGGTGTTAGC  1148

seq1  AGTGAGTGGGGGAATTC  1147
      |||||||||||||||||
seq2  AGTGAGTGGGGGAATTC  1165