BAC Information

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BAC

Clone NameB6Ng01-089K22
Chromosome3 (Build37)
Map Location 88,212,363 - 88,461,754
singlet/doubletdoublet
Overlap genePmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Upstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1
Downstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K22.bB6Ng01-089K22.g
ACCDH902198DH902199
length1,126816
definitionDH902198|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K22, 5' end.DH902199|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,460,629 - 88,461,754)(88,212,363 - 88,213,176)
sequence
gaattccaggatattcagggctacacagagaaaccctttttcaaagaagc
aaacaaacaaaaaatcagtcaggcagtggtagcacacacctttaattcca
gctcttgggaggcagaggcaggcagatctctataaatttgaggccagcct
ggtctagaccaggttccaggacagtcaagactatacagagaaaccctgtc
tcaataaacaaacaaacaagcaaaaccaaaaccaaccaaccaaaaacaaa
aaagaaagatgaataaaaaatttgtgtagatatgtgtatatatcacatgt
gtgttggtgcctgtagaggccagaagacagtgttgtaactcccccacagc
tggagttacaggtagctgtgagccctctttctgtgggtgttagggactga
acttgggttctatggaagatgcagcaatcactcttaaatgttaaaccatc
tctccagccccgccctcttcatttttctaatcaagagaaaataaatccaa
tacatcaaaattgtttaagtgtttttgaatatatgatgtgtgtgtttgtg
tgcacttatgcatttgtgcagagttcaatggagaatgttgggtgatagtc
ttcactagccaccttaagatggtcttcttgttcacccataggtgacccat
gagtttcccaggtccaactatgtagtggtttaaataagtatttgcccgta
ggctcagatatttaaacactgggagttcagttagtgaccctaactgtgct
gtttggggaggttggaaacctttgacaggtggagccttgttagaagaatg
tctccaggtgacaggcgtagagtgtttctggtcttgcctcacttcctgct
ctcttagtgccaagctcttggttactgtgcctgctgccctgcctccattc
ttccccaccatggtggactctagccttcaggaaccataagccgaaagaaa
cttccttaattaagttgccttggccatggcattttctcagagcaacagaa
aagttagtgagaaattttggttctttaaaaaaccactgacggccgggcat
ggtggtggcattcctttatcctccacactcggggaggcaagggcaggcgg
atttctgagtttgaggacgctggtct
gaattctcaccacgaccaattacctgaacctgcagagtgggtagggagtt
tctatggctcatacataaaactactctttctgtgtagtactgtttcctga
atgccaaccagctttgctatttctgagcctggaggtagagccccaggcct
cccagcagctccatcactgagccctacctaccactgagtcccatcgccct
cacctccttgcctttctttagtttaaaatgccagcaactgaggcacaatt
gatgttcgctctttccttgggcttaacataactatataaatcacaccctg
cctagagcatcccaggccatagcactggatcaggatatggtaagacctta
gcccctcagcctcatgggacccactcctctgtaacaagctgctggctgca
ctgtgtcctggtgggagacctggcttctctctgaatagtactaactggcc
tttaccctgggctccactaataccaccaacccagtctcttctggcaggtt
caaatgtcacaagacacagaaaaggaatcccttgcttgctgcagctaaag
agaaagactgtttcagaaggtccaggagactgccaggaccaaaaaaaaaa
agattttcgcttttggagagacaaggcaggggagtgcagatagcagggcc
atgtgcgactgcatctttatattgtgaaacctaagattggcacttctggc
agttgggccttagccaggccaacgaaaaggacagcagggcaagaatttga
ggtccacctgaagccagcatgtccagtcttcctctagtcacttgtggaag
tcactagagctctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88460629_88461754
seq2: B6Ng01-089K22.b_47_1172 (reverse)

seq1  AGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCT-CCCGA  49
      |||||||   | |||||||||||||||||||||||||  ||||| |||||
seq2  AGACCAG--CGTCCTCAAACTCAGAAATCCGCCTGCCCTTGCCTCCCCGA  48

seq1  GTGCTGGGATTAAAGGCATG-CGCCACCATGCCCGGCCGTCATGTGG-TT  97
      |||  | |  |||||| ||| | ||||||||||||||||||| |||| ||
seq2  GTGTGGAGGATAAAGGAATGCCACCACCATGCCCGGCCGTCA-GTGGTTT  97

seq1  TTTAAAGAAACCAAAATTCTCACTACACTTTTCTGTTGCTCTGAGAAAAT  147
      ||||||||| | ||| ||||||||| ||||||||||||||||||||||||
seq2  TTTAAAGAACCAAAATTTCTCACTA-ACTTTTCTGTTGCTCTGAGAAAAT  146

seq1  GCCATGGCCAAGGCAACTTAATTAAGGAAGTTTCTTTCGGCTTATGGTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCCAAGGCAACTTAATTAAGGAAGTTTCTTTCGGCTTATGGTTC  196

seq1  CTGAAGGCTAGAGTCCACCATGGTGGGGAAGAATGGAGGCAGGGCAGCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCTAGAGTCCACCATGGTGGGGAAGAATGGAGGCAGGGCAGCAG  246

seq1  GCACAGTAA-CAAGAGCTTGGCACTAAGAGAGCAGGAAGTGAGGCAAGAC  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAACCAAGAGCTTGGCACTAAGAGAGCAGGAAGTGAGGCAAGAC  296

seq1  CAGAAACACTCTACGCCTGTCACCTGGAGACATTCTTCTAACAAGGCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACTCTACGCCTGTCACCTGGAGACATTCTTCTAACAAGGCTCC  346

seq1  ACCTGTCAAAGGTTTCCAACCTCCCCAAACAGCACAGTTAGGGTCACTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAAAGGTTTCCAACCTCCCCAAACAGCACAGTTAGGGTCACTAA  396

seq1  CTGAACTCCCAGTGTTTAAATATCTGAGCCTACGGGCAAATACTTATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCCCAGTGTTTAAATATCTGAGCCTACGGGCAAATACTTATTTA  446

seq1  AACCACTACATAGTTGGACCTGGGAAACTCATGGGTCACCTATGGGTGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTACATAGTTGGACCTGGGAAACTCATGGGTCACCTATGGGTGAA  496

seq1  CAAGAAGACCATCTTAAGGTGGCTAGTGAAGACTATCACCCAACATTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACCATCTTAAGGTGGCTAGTGAAGACTATCACCCAACATTCTC  546

seq1  CATTGAACTCTGCACAAATGCATAAGTGCACACAAACACACACATCATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTCTGCACAAATGCATAAGTGCACACAAACACACACATCATAT  596

seq1  ATTCAAAAACACTTAAACAATTTTGATGTATTGGATTTATTTTCTCTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAACACTTAAACAATTTTGATGTATTGGATTTATTTTCTCTTGA  646

seq1  TTAGAAAAATGAAGAGGGCGGGGCTGGAGAGATGGTTTAACATTTAAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAATGAAGAGGGCGGGGCTGGAGAGATGGTTTAACATTTAAGAG  696

seq1  TGATTGCTGCATCTTCCATAGAACCCAAGTTCAGTCCCTAACACCCACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGCATCTTCCATAGAACCCAAGTTCAGTCCCTAACACCCACAG  746

seq1  AAAGAGGGCTCACAGCTACCTGTAACTCCAGCTGTGGGGGAGTTACAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGCTCACAGCTACCTGTAACTCCAGCTGTGGGGGAGTTACAACA  796

seq1  CTGTCTTCTGGCCTCTACAGGCACCAACACACATGTGATATATACACATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTGGCCTCTACAGGCACCAACACACATGTGATATATACACATA  846

seq1  TCTACACAAATTTTTTATTCATCTTTCTTTTTTGTTTTTGGTTGGTTGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAAATTTTTTATTCATCTTTCTTTTTTGTTTTTGGTTGGTTGGT  896

seq1  TTTGGTTTTGCTTGTTTGTTTGTTTATTGAGACAGGGTTTCTCTGTATAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGCTTGTTTGTTTGTTTATTGAGACAGGGTTTCTCTGTATAG  946

seq1  TCTTGACTGTCCTGGAACCTGGTCTAGACCAGGCTGGCCTCAAATTTATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGTCCTGGAACCTGGTCTAGACCAGGCTGGCCTCAAATTTATA  996

seq1  GAGATCTGCCTGCCTCTGCCTCCCAAGAGCTGGAATTAAAGGTGTGTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTGCCTCTGCCTCCCAAGAGCTGGAATTAAAGGTGTGTGCT  1046

seq1  ACCACTGCCTGACTGATTTTTTGTTTGTTTGCTTCTTTGAAAAAGGGTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGACTGATTTTTTGTTTGTTTGCTTCTTTGAAAAAGGGTTT  1096

seq1  CTCTGTGTAGCCCTGAATATCCTGGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGAATATCCTGGAATTC  1126

seq1: chr3_88212363_88213176
seq2: B6Ng01-089K22.g_68_883

seq1  GAATTCTCACCACGACCAATTACCTGAACCTGCAGAGTGGGTAGGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCACGACCAATTACCTGAACCTGCAGAGTGGGTAGGGAGTT  50

seq1  TCTATGGCTCATACATAAAACTACTCTTTCTGTGTAGTACTGTTTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGCTCATACATAAAACTACTCTTTCTGTGTAGTACTGTTTCCTGA  100

seq1  ATGCCAACCAGCTTTGCTATTTCTGAGCCTGGAGGTAGAGCCCCAGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACCAGCTTTGCTATTTCTGAGCCTGGAGGTAGAGCCCCAGGCCT  150

seq1  CCCAGCAGCTCCATCACTGAGCCCTACCTACCACTGAGTCCCATCGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCTCCATCACTGAGCCCTACCTACCACTGAGTCCCATCGCCCT  200

seq1  CACCTCCTTGCCTTTCTTTAGTTTAAAATGCCAGCAACTGAGGCACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTTGCCTTTCTTTAGTTTAAAATGCCAGCAACTGAGGCACAATT  250

seq1  GATGTTCGCTCTTTCCTTGGGCTTAACATAACTATATAAATCACACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCGCTCTTTCCTTGGGCTTAACATAACTATATAAATCACACCCTG  300

seq1  CCTAGAGCATCCCAGGCCATAGCACTGGATCAGGATATGGTAAGACCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCATCCCAGGCCATAGCACTGGATCAGGATATGGTAAGACCTTA  350

seq1  GCCCCTCAGCCTCATGGGACCCACTCCTCTGTAACAAGCTGCTGGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCAGCCTCATGGGACCCACTCCTCTGTAACAAGCTGCTGGCTGCA  400

seq1  CTGTGTCCTGGTGGGAGACCTGGCTTCTCTCTGAATAGTACTAACTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTGGTGGGAGACCTGGCTTCTCTCTGAATAGTACTAACTGGCC  450

seq1  TTTACCCTGGGCTCCACTAATACCACCAACCCAGTCTCTTCTGGCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGGGCTCCACTAATACCACCAACCCAGTCTCTTCTGGCAGGTT  500

seq1  CAAATGTCACAAGACACAGAAAAGGAATCCCTTGCTTGCTGCAGCTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCACAAGACACAGAAAAGGAATCCCTTGCTTGCTGCAGCTAAAG  550

seq1  AGAAAGACTGTTTCAGAAGGTCCAGGAGACTGCCAGGACCAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACTGTTTCAGAAGGTCCAGGAGACTGCCAGGACCAAAAAAAAAA  600

seq1  AGA-TTTCGCTTTTGGAGAGACAAGGCAGGGGAGTGCAGATAGCAGGGCC  649
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCGCTTTTGGAGAGACAAGGCAGGGGAGTGCAGATAGCAGGGCC  650

seq1  ATGTGCGACTGCATCTTTATATTGTGAAACCTAAGATTGGCACTTCTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGACTGCATCTTTATATTGTGAAACCTAAGATTGGCACTTCTGGC  700

seq1  AGTTGGGCCTTAGCCAGGCCAACGAAAAGGACAGCAGGGCAAGAATTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGCCTTAGCCAGGCCAACGAAAAGGACAGCAGGGCAAGAATTTGA  750

seq1  GGTCCACCTGAAGCCAGCATGTCCAGTCTTCCTCTAGTCAC-TGTGGAAG  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTCCACCTGAAGCCAGCATGTCCAGTCTTCCTCTAGTCACTTGTGGAAG  800

seq1  TCACTAGAGCTCTGCT  814
      ||||||||||||||||
seq2  TCACTAGAGCTCTGCT  816