BAC Information

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BAC

Clone NameB6Ng01-089N01
Chromosome3 (Build37)
Map Location 46,572,909 - 46,691,904
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N01.bB6Ng01-089N01.g
ACCDH902294DH902295
length9711,057
definitionDH902294|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N01, 5' end.DH902295|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,690,933 - 46,691,904)(46,572,909 - 46,573,985)
sequence
gaattctatcatgtctttagcccaggtctgtgtgttcattttcttgacta
gaatttgttaaaatatggttgtgttgaagatgtcagaaccagtagctagt
aatgaaactttgtttcaagcttatggggatattttgtttgaaattagtaa
attatcactaattttcacttatgaaaattactcccaaagtaagtactttt
attcaccacctgactggggtagatgatagtttgtctgtcatgttttattc
agccaaacttagtggaggataagcaactctgaggtgcaacctaatgacat
cttaaaatggtattattgcaatcaaagtgggtgtcatttgtgtgattgaa
ggtccataattgtctcattttacctatcaaagttctctctacttttgcct
aatattttgatttgatgattctcttttacataaatgaaattatatttcaa
ttattaattctttattttctgcctaattacttctttgtattcatttattt
agcatattttattttaatatgaatattaatgtacaaaatgtcaggttctc
ttagatattgggaatgtaccagtgaatttaaaaaaaaagtcttctttgtg
taatacttacagtgatctgagataaaacagtataaaataagttactctac
tgtggatgaggcttaaagttgaatttctttcaaaggtgcacagttgatta
aacaatagtactagaggacattatgggcatactatgatgaacataataat
tgattcagtttagagacttacatactatttttaaacctttttctatcttc
aaatactacttgaaactctgagactatatatttgtcttttttcagaataa
accatttattttatcatgctcactcttttttaatttcatgtaaaacaatt
tttatcatggaattagtacaaacctgatatatatatgtgtgtgtctgtgt
gtttgtgtgtgtgtgtgtgtg
ttagatttgattttcagatcaggccttggaaatcagcaactgcaatgaat
accctatctctatcatcagctcacattgcatggagactgatagactagat
aaagactgacagggagaagagagcaaaacgacggagatgaatactaagag
taatgtacttggatataaactattcctcctaaaataataagaatagatag
agggaatgaagctatcttgctctacctggattcaaacgctcaatcatacc
cagctattaggcacacatcccaactttaaggctgcttttccatttacata
ccactttgtaaatggtcaaaggccacatttttaaaaatggatacaatata
accttcacttttctaattcgtatgcattttagttcttttgcttatgaaag
ccttagaggagtataccacatgtgtcatataaatagatcagcatgccgct
tttgagaacaatgttatgagttttctttctattctgtgctcttactatag
tgataaacagctcaccactttatttttaaaaaaaaggaatttctcttttt
aatgttaaaaaagaaacaggaattgaagtaagtggactttctttggcatt
agtatttgctctcagtttctatgaagtggtttcatgcatcacagggttag
ttggtgtttccctgagattttggctgcttggtagccaaacaaggtttaag
atgggttctttggaccaaagcagctctggctcagatggatcacgggatac
aaatgttaacatctgtagaggctataaatttaacacaagccaggtaaggg
caagtgatttagcattagtcgttatgcagggtaacaaatctaaaattgtt
tctatggtcagtaactccatgttccatagtctcagaggaactcccactat
tggaggtgtgggtgtgacatcattagagtagtgtgcattgttggtgggat
tgttcatcatcttcttctgtgttgcagatcagatgtagactctctgtctt
ctagcaccatgtctgctgcacactgctatgtttccatgacaaaaatgact
aacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46690933_46691904
seq2: B6Ng01-089N01.b_47_1017 (reverse)

seq1  CACACACACACACACACAAACACACAGACACACACATATATATATCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAAACACACAGACACACACATATATATATCAGGT  50

seq1  TTGTACTAATTCCATGATAAAAATTGTTTTACATGAAAATTAAAAAAGAG  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTACTAATTCCATGATAAAAATTGTTTTACATG-AAATTAAAAAAGAG  99

seq1  TGAGCATGATAAAATAAATGGTTTATTCTGAAAAAAGACAAATATATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGATAAAATAAATGGTTTATTCTGAAAAAAGACAAATATATAGT  149

seq1  CTCAGAGTTTCAAGTAGTATTTGAAGATAGAAAAAGGTTTAAAAATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTTTCAAGTAGTATTTGAAGATAGAAAAAGGTTTAAAAATAGTA  199

seq1  TGTAAGTCTCTAAACTGAATCAATTATTATGTTCATCATAGTATGCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCTCTAAACTGAATCAATTATTATGTTCATCATAGTATGCCCAT  249

seq1  AATGTCCTCTAGTACTATTGTTTAATCAACTGTGCACCTTTGAAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTCTAGTACTATTGTTTAATCAACTGTGCACCTTTGAAAGAAAT  299

seq1  TCAACTTTAAGCCTCATCCACAGTAGAGTAACTTATTTTATACTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTAAGCCTCATCCACAGTAGAGTAACTTATTTTATACTGTTTTA  349

seq1  TCTCAGATCACTGTAAGTATTACACAAAGAAGACTTTTTTTTTAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATCACTGTAAGTATTACACAAAGAAGACTTTTTTTTTAAATTCA  399

seq1  CTGGTACATTCCCAATATCTAAGAGAACCTGACATTTTGTACATTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACATTCCCAATATCTAAGAGAACCTGACATTTTGTACATTAATAT  449

seq1  TCATATTAAAATAAAATATGCTAAATAAATGAATACAAAGAAGTAATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAAAATAAAATATGCTAAATAAATGAATACAAAGAAGTAATTAG  499

seq1  GCAGAAAATAAAGAATTAATAATTGAAATATAATTTCATTTATGTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATAAAGAATTAATAATTGAAATATAATTTCATTTATGTAAAAG  549

seq1  AGAATCATCAAATCAAAATATTAGGCAAAAGTAGAGAGAACTTTGATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATCAAATCAAAATATTAGGCAAAAGTAGAGAGAACTTTGATAGG  599

seq1  TAAAATGAGACAATTATGGACCTTCAATCACACAAATGACACCCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGACAATTATGGACCTTCAATCACACAAATGACACCCACTTTG  649

seq1  ATTGCAATAATACCATTTTAAGATGTCATTAGGTTGCACCTCAGAGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATAATACCATTTTAAGATGTCATTAGGTTGCACCTCAGAGTTGC  699

seq1  TTATCCTCCACTAAGTTTGGCTGAATAAAACATGACAGACAAACTATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCACTAAGTTTGGCTGAATAAAACATGACAGACAAACTATCAT  749

seq1  CTACCCCAGTCAGGTGGTGAATAAAAGTACTTACTTTGGGAGTAATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCAGTCAGGTGGTGAATAAAAGTACTTACTTTGGGAGTAATTTTC  799

seq1  ATAAGTGAAAATTAGTGATAATTTACTAATTTCAAACAAAATATCCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAAAATTAGTGATAATTTACTAATTTCAAACAAAATATCCCCAT  849

seq1  AAGCTTGAAACAAAGTTTCATTACTAGCTACTGGTTCTGACATCTTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGAAACAAAGTTTCATTACTAGCTACTGGTTCTGACATCTTCAAC  899

seq1  ACAACCATATTTTAACAAATTCTAGTCAAGAAAATGAACACACAGACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATATTTTAACAAATTCTAGTCAAGAAAATGAACACACAGACCTG  949

seq1  GGCTAAAGACATGATAGAATTC  972
      ||||||||||||||||||||||
seq2  GGCTAAAGACATGATAGAATTC  971

seq1: chr3_46572909_46573985
seq2: B6Ng01-089N01.g_80_1136

seq1  TTAGATTTGATTTTCAGATCAGGCCTTGGAAATCAGCAACTGCAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGATTTTCAGATCAGGCCTTGGAAATCAGCAACTGCAATGAAT  50

seq1  ACCCTATCTCTATCATCAGCTCACATTGCATGGAGACTGATAGACTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCTCTATCATCAGCTCACATTGCATGGAGACTGATAGACTAGAT  100

seq1  AAAGACTGACAGGGAGAAGAGAGCAAAACGACGGAGATGAATACTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGACAGGGAGAAGAGAGCAAAACGACGGAGATGAATACTAAGAG  150

seq1  TAATGTACTTGGATATAAACTATTCCTCCTAAAATAATAAGAATAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACTTGGATATAAACTATTCCTCCTAAAATAATAAGAATAGATAG  200

seq1  AGGGAATGAAGCTATCTTGCTCTACCTGGATTCAAACGCTCAATCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAAGCTATCTTGCTCTACCTGGATTCAAACGCTCAATCATACC  250

seq1  CAGCTATTAGGCACACATCCCAACTTTAAGGCTGCTTTTCCATTTACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAGGCACACATCCCAACTTTAAGGCTGCTTTTCCATTTACATA  300

seq1  CCACTTTGTAAATGGTCAAAGGCCACATTTTTAAAAATGGATACAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTGTAAATGGTCAAAGGCCACATTTTTAAAAATGGATACAATATA  350

seq1  ACCTTCACTTTTCTAATTCGTATGCATTTTAGTTCTTTTGCTTATGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACTTTTCTAATTCGTATGCATTTTAGTTCTTTTGCTTATGAAAG  400

seq1  CCTTAGAGGAGTATACCACATGTGTCATATAAATAGATCAGCATGCCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGGAGTATACCACATGTGTCATATAAATAGATCAGCATGCCGCT  450

seq1  TTTGAGAACAATGTTATGAGTTTTCTTTCTATTCTGTGCTCTTACTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACAATGTTATGAGTTTTCTTTCTATTCTGTGCTCTTACTATAG  500

seq1  TGATAAACAGCTCACCACTTTATTTTTAAAAAAAAGGAATTTCTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACAGCTCACCACTTTATTTTTAAAAAAAAGGAATTTCTCTTTTT  550

seq1  AATGTTAAAAAAGAAACAGGAATTGAAGTAAGTGGACTTTCTTTGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAAAAAGAAACAGGAATTGAAGTAAGTGGACTTTCTTTGGCATT  600

seq1  AGTATTTGCTCTCAGTTTCTATGAAGTGGTTTCATGCATCACAGGGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTCTCAGTTTCTATGAAGTGGTTTCATGCATCACAGGGTTAG  650

seq1  TTGGTGTTTCCCTGAGATTTTGGCTGCTTGGTAGCCAAACAAGGTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTCCCTGAGATTTTGGCTGCTTGGTAGCCAAACAAGGTTTAAG  700

seq1  ATGGGTTCTTTGGACCAAAGCAGCTCTGGCTCAGATGGATCAGGGGATAC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGGGTTCTTTGGACCAAAGCAGCTCTGGCTCAGATGGATCACGGGATAC  750

seq1  AAATGTTAACATCTGTAGAGGCTATAAATTTAACACAAGCCAGGTAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAACATCTGTAGAGGCTATAAATTTAACACAAGCCAGGTAAGGG  800

seq1  CAAGTGATTTAGCATTAGTCGTTATGCAGGGTAACAAATCTAAAATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATTTAGCATTAGTCGTTATGCAGGGTAACAAATCTAAAATTGTT  850

seq1  TCTATGGTCAGTAACTCCATGTTCCATAGTCTCAGGAGGAACTCCCACTA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTATGGTCAGTAACTCCATGTTCCATAGTCTCA-GAGGAACTCCCACTA  899

seq1  TTGGAAGGTGTGGGTGTGACATCATTAGAGTAGGTGTTGCATTGTTGGTG  950
      |||| ||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TTGG-AGGTGTGGGTGTGACATCATTAGAGTA-GTG-TGCATTGTTGGTG  946

seq1  GGATTGTTCATCATCCTCTTCCTGGTGT-TTGCAGATCAAGATGTAAGAC  999
      ||||||||||||||| |||||    ||| ||||||||| |||||| ||||
seq2  GGATTGTTCATCATCTTCTTC----TGTGTTGCAGATC-AGATGT-AGAC  990

seq1  TCTCTGTTCCTTCTCAGGCACCATGTCTGCCTGCACACTGCTATGTTTTC  1049
      |||||||  |||||   |||||||||||| ||||||||||||||||||  
seq2  TCTCTGT--CTTCT--AGCACCATGTCTG-CTGCACACTGCTATGTTT--  1033

seq1  CACAATGACAAAAATGGACTAAACTTCT  1077
        | ||||||||||| |||| |||||||
seq2  --CCATGACAAAAAT-GACT-AACTTCT  1057