BAC Information

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BAC

Clone NameB6Ng01-089N21
Chromosome3 (Build37)
Map Location 16,276,056 - 16,419,532
singlet/doubletdoublet
Overlap geneLOC100040034
Upstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N21.bB6Ng01-089N21.g
ACCDH902331DH902332
length8891,166
definitionDH902331|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N21, 5' end.DH902332|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,276,056 - 16,276,873)(16,418,337 - 16,419,532)
sequence
gaattctttgtttagctctataccccatttttaatttttttttctggagt
aaattttcttgagttctttatatatattggatattattcccctatctgat
ttaggattagtaaggatcctctcccaatcagttggtggcattggtcttat
tgacagtgtcttttgccttacagaagcttggcaatgttattaggtcccat
ttatcaatattcaatcttacagcacaagccattgctgttctgttcaggaa
tttttcttttgtgctcatatcttcaaggcttttcaccactttcccctcta
taagtttcagtttctctagttttatgtggagttccttgagcctcttagac
ttgagctttgtaaaaggagatatccccttgatgtccatttgttgtcgaat
tgttttgtctagaacttcaagtactattttgaataggtagggagaaagtg
ggcagccttctctagtccctgattttagtgggattgtttcgggtttctct
ccatttagtttgatgttggctactggtttgctgtatattgcttttattat
gtttaggaattcagtttctttagagaacctatccagttggccatgattgt
ttgatgcccactggctgaataagatcaacaatggatgaggccattttgct
ttcttagcagaggctggcaccagggacttgttctgtgtgccagagattgt
tagtatttctccactgacttcttcactaacagaagtttccctctgggcta
ttttacatatatatatatatatatatatatatatatatatatatatatat
ttttattatgcgtgtgctatacctccaaagctgccctgtaatttccagac
aatgggatgtgataatttacatagtttgtattggaaggt
gaattctagagacctgaatgacccttaaagagataggaaacgaaaaagat
tcaaggaaaagaaagaacattaaaatcatacaaaggacagtttgagaata
ttaactcataggctcatatccagtagaaataggccaactatttatgtgca
ttaaaatattcatgaacataactcctgagttgatatgatcatagttttca
atcatgccaccaaattgtagattataagatattattctttcgtgttaatt
ttattgtgtggagtgtttagataagatggtggtacatgcttaagatctaa
gacacattttgagttattttgccattttggtgatagaacttatgccataa
ttgaaacagtatagtctcccaattatagctaaattaatattggcaagttg
ttagtgttgttcctgattttgactaacaacaatctatttctcaatttcat
cttgactcacatcattgataaatatataaatctgaagggcagtatcataa
acagggtatctaagataaattataatgaaaatataagaaagctttatata
attcacatattgaatactatatttcatggctgcaataggcagtgaataat
ttcagaaaataatatactttccaaattactccagtctcaaaaaaaatcaa
tattttcatgtttgattttttgagtttataattatatcattttcccattc
cttttcttcctcaaaatactcccttatacccctcattgctcttgatttct
ttcaaattcatggtcttgtattccattatttgttgtttcttgcaaatata
tatatatatatatccctaaatataaattttggggtttgtagaatgttact
tttttgttcattttcaggttgtccattggtattggcttaccaatttgtga
tacacataatgttctctcatatcttgttccatgtgaaacatgggcacata
ttgtagtctgaagtcattatatgcaaaaaattgaattttcatctaatttc
ctttatattaattgttattaattactgttggtatttgaacccctctagaa
ttaatactaaacccttttacctccaaagtgttcccacctcaatcgtctcc
aatccccgtgtctcacgagagtgttcccaccacaaaccacacctaacata
actctaaatccatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16276056_16276873
seq2: B6Ng01-089N21.b_110_928

seq1  TCTTTATATATATTGGATATTATTCCCCTATCTGATTTAGGATTAGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATATATTGGATATTATTCCCCTATCTGATTTAGGATTAGTAAG  50

seq1  GATCCTCTCCCAATCAGTTGGTGGCATTGGTCTTATTGACAGTGTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCCCAATCAGTTGGTGGCATTGGTCTTATTGACAGTGTCTTTT  100

seq1  GCCTTACAGAAGCTTGGCAATGTTATTAGGTCCCATTTATCAATATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAGAAGCTTGGCAATGTTATTAGGTCCCATTTATCAATATTCAA  150

seq1  TCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCTTTTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCTTTTGTGC  200

seq1  TCATATCTTCAAGGCTTTTCACCACTTTCCCCTCTATAAGTTTCAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTCAAGGCTTTTCACCACTTTCCCCTCTATAAGTTTCAGTTTC  250

seq1  TCTAGTTTTATGTGGAGTTCCTTGAGCCTCTTAGACTTGAGCTTTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTATGTGGAGTTCCTTGAGCCTCTTAGACTTGAGCTTTGTAAA  300

seq1  AGGAGATATCCCCTTGATGTCCATTTGTTGTCGAATTGTTTTGTCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATCCCCTTGATGTCCATTTGTTGTCGAATTGTTTTGTCTAGAA  350

seq1  CTTCAAGTACTATTTTGAATAGGTAGGGAGAAAGTGGGCAGCCTTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTACTATTTTGAATAGGTAGGGAGAAAGTGGGCAGCCTTCTCTA  400

seq1  GTCCCTGATTTTAGTGGGATTGTTTCGGGTTTCTCTCCATTTAGTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGATTTTAGTGGGATTGTTTCGGGTTTCTCTCCATTTAGTTTGAT  450

seq1  GTTGGCTACTGGTTTGCTGTATATTGCTTTTATTATGTTTAGGAATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTACTGGTTTGCTGTATATTGCTTTTATTATGTTTAGGAATTCAG  500

seq1  TTTCTTTAGAGAACCTATCCAGTTGGCCATGATTGTTTGATGCCCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGAGAACCTATCCAGTTGGCCATGATTGTTTGATGCCCACTGG  550

seq1  CTGAATAAGATCAACAATGGATGAGGCCATTTTGCTTTCTTAGCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAGATCAACAATGGATGAGGCCATTTTGCTTTCTTAGCAGAGGC  600

seq1  TGGCACCAGGGACTTGTTCTGTGTGCCAGAGATTGTTAGTATTTCTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCAGGGACTTGTTCTGTGTGCCAGAGATTGTTAGTATTTCTCCAC  650

seq1  TGACTTCTTCACTAACAGAAGTTT-CCTCTGGGCTATTTTACATATATAT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACTTCTTCACTAACAGAAGTTTCCCTCTGGGCTATTTTACATATATAT  700

seq1  ATATATATATATATATATATATATATATATATATATTTTTTTTTTCAGTG  749
      |||||||||||||||||||||||||||||||||||||||| || |  |||
seq2  ATATATATATATATATATATATATATATATATATATTTTTATTATGCGTG  750

seq1  TGCTTTACCT-CAAAGCAGGCACTGTAA-TTCCAGACAATGGGATGTGAT  797
      |||| ||||| ||||||  || |||||| |||||||||||||||||||||
seq2  TGCTATACCTCCAAAGC-TGCCCTGTAATTTCCAGACAATGGGATGTGAT  799

seq1  ATGTTACAATAGTTTGTATTG  818
      |  |||| |||||||||||||
seq2  AATTTAC-ATAGTTTGTATTG  819

seq1: chr3_16418337_16419532
seq2: B6Ng01-089N21.g_72_1237 (reverse)

seq1  CCCATGGAGTTTAGAGTTATGTTTGAGTGGGTGGTTTGTGGTGGGGACAT  50
      |||||||| |||||||||||||| |   | ||||||||||||||| ||| 
seq2  CCCATGGA-TTTAGAGTTATGTTAG---GTGTGGTTTGTGGTGGGAACAC  46

seq1  CTTCGTGGAGACAGGGGCATGGGAAGAAGGTATTGAGTGTGGAACA-TTT  99
        |||| |||||| ||| || || ||| |  ||||||   |||||| |||
seq2  TCTCGT-GAGACACGGGGATTGG-AGACG--ATTGAGGTGGGAACACTTT  92

seq1  GGAGGGTAAAGGGGTATTAGTAATAAATTCTAGAGTGTCTAAAATAAACA  149
      ||| |||||| |||| ||||| || |||||||||| |  | ||||  || 
seq2  GGA-GGTAAAAGGGT-TTAGT-ATTAATTCTAGAGGGGTTCAAAT--ACC  137

seq1  AACAAGTAAATAAATAAACAAATAAATAATAAAAAGAAAATAAGAATAGA  199
      ||| ||||| |||       || || ||||| |||| |||| ||   |  
seq2  AAC-AGTAATTAA------TAACAATTAATATAAAGGAAATTAG---ATG  177

seq1  AAAATTCAATATTTTTGCATATTAATGGACTTCAAGACTACAAATATGTG  249
      |||||||||| |||||||||| |||| |||||| ||||||| ||||||||
seq2  AAAATTCAAT-TTTTTGCATA-TAAT-GACTTC-AGACTAC-AATATGTG  222

seq1  CCCATGTTTCACATGGAACAAGATTATGAGAGAACATTATGGTGTATCAC  299
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CCCATGTTTCACATGGAACAAGA-TATGAGAGAACATTAT-GTGTATCAC  270

seq1  AAATTGGTAAGCCAATACCAATGGACAACCCTGAAAATGAACAAAAAAGT  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATTGGTAAGCCAATACCAATGGACAA-CCTGAAAATGAACAAAAAAGT  319

seq1  AACATTCTACAAACCCCAAAATTTATATTTAGGGATATATATATATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTACAAACCCCAAAATTTATATTTAGGGATATATATATATATAT  369

seq1  ATTTGCAAGAAACAACAAATAATGGAATACAAGACCATGAATTTGAAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAGAAACAACAAATAATGGAATACAAGACCATGAATTTGAAAGA  419

seq1  AATCAAGAGCAATGAGGGGTATAAGGGAGTATTTTGAGGAAGAAAAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAGCAATGAGGGGTATAAGGGAGTATTTTGAGGAAGAAAAGGAA  469

seq1  TGGGAAAATGATATAATTATAAACTCAAAAAATCAAACATGAAAATATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATGATATAATTATAAACTCAAAAAATCAAACATGAAAATATTG  519

seq1  ATTTTTTTTGAGACTGGAGTAATTTGGAAAGTATATTATTTTCTGAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTGAGACTGGAGTAATTTGGAAAGTATATTATTTTCTGAAATT  569

seq1  ATTCACTGCCTATTGCAGCCATGAAATATAGTATTCAATATGTGAATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGCCTATTGCAGCCATGAAATATAGTATTCAATATGTGAATTAT  619

seq1  ATAAAGCTTTCTTATATTTTCATTATAATTTATCTTAGATACCCTGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTTCTTATATTTTCATTATAATTTATCTTAGATACCCTGTTTA  669

seq1  TGATACTGCCCTTCAGATTTATATATTTATCAATGATGTGAGTCAAGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGCCCTTCAGATTTATATATTTATCAATGATGTGAGTCAAGATG  719

seq1  AAATTGAGAAATAGATTGTTGTTAGTCAAAATCAGGAACAACACTAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGAAATAGATTGTTGTTAGTCAAAATCAGGAACAACACTAACAA  769

seq1  CTTGCCAATATTAATTTAGCTATAATTGGGAGACTATACTGTTTCAATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATATTAATTTAGCTATAATTGGGAGACTATACTGTTTCAATTA  819

seq1  TGGCATAAGTTCTATCACCAAAATGGCAAAATAACTCAAAATGTGTCTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAGTTCTATCACCAAAATGGCAAAATAACTCAAAATGTGTCTTA  869

seq1  GATCTTAAGCATGTACCACCATCTTATCTAAACACTCCACACAATAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAGCATGTACCACCATCTTATCTAAACACTCCACACAATAAAAT  919

seq1  TAACACGAAAGAATAATATCTTATAATCTACAATTTGGTGGCATGATTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGAAAGAATAATATCTTATAATCTACAATTTGGTGGCATGATTGA  969

seq1  AAACTATGATCATATCAACTCAGGAGTTATGTTCATGAATATTTTAATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGATCATATCAACTCAGGAGTTATGTTCATGAATATTTTAATGC  1019

seq1  ACATAAATAGTTGGCCTATTTCTACTGGATATGAGCCTATGAGTTAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAGTTGGCCTATTTCTACTGGATATGAGCCTATGAGTTAATAT  1069

seq1  TCTCAAACTGTCCTTTGTATGATTTTAATGTTCTTTCTTTTCCTTGAATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTGTCCTTTGTATGATTTTAATGTTCTTTCTTTTCCTTGAATC  1119

seq1  TTTTTCGTTTCCTATCTCTTTAAGGGTCATTCAGGTCTCTAGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGTTTCCTATCTCTTTAAGGGTCATTCAGGTCTCTAGAATTC  1166