BAC Information

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BAC

Clone NameB6Ng01-089N22
Chromosome3 (Build37)
Map Location 125,781,162 - 125,782,213
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N22.bB6Ng01-089N22.g
ACCDH902333DH902334
length1,2551,057
definitionDH902333|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N22, 5' end.DH902334|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcggctctatga
taacccttgccacacttagagcaaagagtgagagtccccccctttttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcaattaaaac
atgtcctctgattatttctgcccatggagcggttttgggattgaaggatg
gcagccgctaaacctgcattgctgagaggtcccccaagctcccgacaaac
cctgagccagtcttgtaaacctttgttctttcttggggctatggctgctc
ggcactcctgtgtggcttgctcatagattagctgttctaccagaggcgcg
gcttgctctgaatctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggattcctgaggtccctggacaacttttgttaatt
gaccagtggtttcacctgctcgggagagcgccttccaggccctaatagcc
gtggaagaaatctgggcataagctccccaatggtagtttgtttgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagttaaagcagcagcgtttgctcgggcctgcgcttgtgcagtttca
tgccaaagagctctccattccatatatttgcccatactagggagagcggc
ttttgcaatcatttgccagtcggcaggagttagtgccatgccggcgagcc
tgtctaactgcaccaaggtaaaattagcattgattccatatttacggacc
gactcggcaagctctttaatttgcacatattctaccggagcgtggacacg
cccaccctcggctccttcaaagaccggaaatgcctgttgtattttccttt
gttcctcctttggaatgaacgagtctgcgcattgcctctctgtccattgc
ctctctgcgcaggctgatgcactacgcaggcggggggctcagcatagggc
ggaccttgaaacgactgccctgaaggcaatcagcaaactggcttcgcagc
cgcttttggctcctaactgattagctagcacttacctggcctggtacctt
ttttctcataatgaagctggcttcttcctctccagcctgttttcttcgag
gagaaattctctactttctggtaattccagttccaagaagcttgtccccg
gagccattccgcgagtgacaagaccttgcttttctcatagaagaacactc
gcgct
gaattcatggagcttatgtttcaggggctgaatcattctaggcttaggta
attagatagaggctagaagctgaagctttcaaagaatgggtttgcagaag
attagattgtatggaggcttgaagcttttaagcctagcccgaggaatagt
cagactcagccctagccacgtattcagaaagcttgggtacagctcttgtt
gcatcccttcttcagaagaagtaaaggcaacaattacagcctgtggtttt
aatattgtcaacatataagttctcagctctgcagctaatctcaatgttag
taacttttctgcttttattttttgttttgtttcttattttatttgtctgt
ctgtttttgtgagaggaaatgcatacatactttgcccaactaccagtctc
atactggtatatctgtgacccatattcctgtgggccctggtgaggcccta
gctctgtgtgacatcttgtcttgcctttggtgaaacacaaggggttcaac
cttgagagaacactttatttcttctatcagaagggaatccccagagaaat
gggtttcccctgttctcccccagtgctttaatattgtgaagagatcaaaa
taatagctaaaacacaatatatacttcttactttccagccacccagcctc
acaggaaattccctttgatctattgcatttgtttacagaaaggagagcac
cgtcatgtccaaatcagaggaaaagtgttattttcataaaaattcccaca
atattatgctccttgcatggatgggttcctggttaggctattgagaaaat
gatgggccaaaagtgggagaaaattcctgaacataggacataattttctt
tttagctatggggtcttattaattaatttttgatttactcattaatttta
atttaggatgtatatgtttatctagatgtgttttcataaatgtgtattaa
aaattagtgcgttctaataaaaatactggatacctttaagagttgaattg
aatttatctaaacattttttactctgtagtacttctttgccaaattcatt
aacaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125781162_125782213
seq2: B6Ng01-089N22.g_71_1126

seq1  GAATTCATGGAGCTTATGTTTCAGGGGCTGAATCATTCTAGGCTTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAGCTTATGTTTCAGGGGCTGAATCATTCTAGGCTTAGGTA  50

seq1  ATTAGATAGAGGCTAGAAGCTGAAGCTTTCAAAGAATGGGTTTGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAGAGGCTAGAAGCTGAAGCTTTCAAAGAATGGGTTTGCAGAAG  100

seq1  ATTAGATTGTATGGAGGCTTGAAGCTTTTAAGCCTAGCCCGAGGAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTGTATGGAGGCTTGAAGCTTTTAAGCCTAGCCCGAGGAATAGT  150

seq1  CAGACTCAGCCCTAGCCACGTATTCAGAAAGCTTGGGTACAGCTCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGCCCTAGCCACGTATTCAGAAAGCTTGGGTACAGCTCTTGTT  200

seq1  GCATCCCTTCTTCAGAAGAAGTAAAGGCAACAATTACAGCCTGTGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTTCTTCAGAAGAAGTAAAGGCAACAATTACAGCCTGTGGTTTT  250

seq1  AATATTGTCAACATATAAGTTCTCAGCTCTGCAGCTAATCTCAATGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTCAACATATAAGTTCTCAGCTCTGCAGCTAATCTCAATGTTAG  300

seq1  TAACTTTTCTGCTTTTATTTTTTGTTTTGTTTCTTATTTTATTTGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCTGCTTTTATTTTTTGTTTTGTTTCTTATTTTATTTGTCTGT  350

seq1  CTGTTTTTGTGAGAGGAAATGCATACATACTTTGCCCAACTACCAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGTGAGAGGAAATGCATACATACTTTGCCCAACTACCAGTCTC  400

seq1  ATACTGGTATATCTGTGACCCATATTCCTGTGGGCCCTGGTGAGGCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTATATCTGTGACCCATATTCCTGTGGGCCCTGGTGAGGCCCTA  450

seq1  GCTCTGTGTGACATCTTGTCTTGCCTTTGGTGAAACACAAGGGGTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTGACATCTTGTCTTGCCTTTGGTGAAACACAAGGGGTTCAAC  500

seq1  CTTGAGAGAACACTTTATTTCTTCTATCAGAAGGGAATCCCCAGAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGAACACTTTATTTCTTCTATCAGAAGGGAATCCCCAGAGAAAT  550

seq1  GGGTTTCCCCTGTTCTCCCCCAGTGCTTTAATATTGTGAAGAGATCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCCCTGTTCTCCCCCAGTGCTTTAATATTGTGAAGAGATCAAAA  600

seq1  TAATAGCTAAAACACAATATATACTTCTTACTTTCCAGCCACCCAGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTAAAACACAATATATACTTCTTACTTTCCAGCCACCCAGCCTC  650

seq1  ACAGGAAATTCCCTTTGATCTATTGCATTTGTTTACAGAAAGGAGAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAATTCCCTTTGATCTATTGCATTTGTTTACAGAAAGGAGAGCAC  700

seq1  CGTCATGTCCAAATCAGAGGAAAAGTGTTATTTTCATAAAAATTCCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATGTCCAAATCAGAGGAAAAGTGTTATTTTCATAAAAATTCCCACA  750

seq1  ATATTATGCTCCTTGCATGGATGG--TCCTGGTTAGGCTATTGAGAAAAT  798
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATATTATGCTCCTTGCATGGATGGGTTCCTGGTTAGGCTATTGAGAAAAT  800

seq1  GAT-GGCCAAAAGTGGGAG-AAATTCCTGAACATAGGACAT-ATTTTCTT  845
      ||| ||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GATGGGCCAAAAGTGGGAGAAAATTCCTGAACATAGGACATAATTTTCTT  850

seq1  TTTAGCTAT-GGGTCTTATTAATTAA-TTTTGATTTACTCATTAATTTTA  893
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TTTAGCTATGGGGTCTTATTAATTAATTTTTGATTTACTCATTAATTTTA  900

seq1  ATTTAAGAATGTATATTGTATTATTCTAGATGTGTTTTCATAAATGTGTA  943
      |||| || ||||||| ||| ||| ||||||||||||||||||||||||||
seq2  ATTT-AGGATGTATA-TGT-TTA-TCTAGATGTGTTTTCATAAATGTGTA  946

seq1  TTAAAAATTAGTGTGTTCTAAATAAAAATACTGGATA-CTTTTAGAGTTG  992
      ||||||||||||| ||||| ||||||||||||||||| |||| |||||||
seq2  TTAAAAATTAGTGCGTTCT-AATAAAAATACTGGATACCTTTAAGAGTTG  995

seq1  AATTGAATTTTATCTAAAACATTTTTA-TCTGTAGTAC-TCTTTGCCAAG  1040
      ||||||| ||||||||||   |||||| |||||||||| |||||||||| 
seq2  AATTGAA-TTTATCTAAACATTTTTTACTCTGTAGTACTTCTTTGCCAAA  1044

seq1  TACATTAACAAT  1052
      | ||||||||||
seq2  TTCATTAACAAT  1056