BAC Information

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BAC

Clone NameB6Ng01-089O13
Chromosome3 (Build37)
Map Location 52,392,654 - 52,587,549
singlet/doubletdoublet
Overlap geneLOC100039762, LOC100039832
Upstream geneMgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089O13.bB6Ng01-089O13.g
ACCDH902359DH902360
length1,1021,195
definitionDH902359|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O13, 5' end.DH902360|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,586,460 - 52,587,549)(52,392,654 - 52,393,852)
sequence
gaattccacatcaccaacagcatccgtatgtagtcatcctgaacacaagc
atagaaacactgtgagccaactgcaggctccacctttacaaataccttat
gtttggctcagcaatgactttcccccgggaaccctttgagacatgagtcc
cctccacttccccttccacgaaactcactgcatttttgcactttgcatgg
acgtcctgctcacagatcacataggtctagtccccagtaagcagggaaag
ctctccttggtctttggatgccctgtagcccagtgctttgattctatgct
gttgtgtgaattcattccaggacagttctccttacaaagtacagtagtgc
taaactgacatcaccctctaaggtggcatccaagcaaaactctttacaga
gtgaagagaaagcctacaaaataagatcaagtacttgaaaaccttatcag
gaactaatatccaaatggtatgtaagaatttgaaaaactcactacaagac
agtaataactcaatttgtataccatgcagccatcggaaatgataagacaa
agaagatgggataaaatggagtggccatctttctttctaaatgctagtcc
atttttttttttttttttgtatataaatcccctatgtttcctataacata
cggacgtgtttacatacaaaaggagtgctatgttttaaaatcttcatttt
tgttcccctacttgaaggcacaaacattcttggattcaggaccacttaaa
gcaaatataaatttagagaaaagcctttaagcacatattcatgagtcctc
tgccgaaggactggtgtgcattgctgagcacttcaaagctgtgattttag
ctgtgcacgatccaggaataaaatgtaagatgctctgtgagccattcaaa
tcgtttgccaagggcttccctttcagtctgctatggttttctttgctacg
tagcaactttttactttcatgcaactcaatttttcattcttgggattatt
tcctatgaacatggaatgttcttcagaaatgttttgctcaggtcaatgcc
ttgaagtggcattcctagaagtagatgtttctttcgtggcatttgtctgt
tg
gaattcttgggcttagggtaagtcaaaagtatgagaccacaaccaataga
atgtaggtggactgtgagggacccactgtaaatctcattctagggggtct
cctagagctggagaggtgagatgtgacgtctgacccttgaaggtctagct
cagaagaggttccatcttgccacattctaaggggccttgggcacctgtct
gacactatctcttcttgtctgtgctgcagctgttgcctgaaggagactga
ggtgagaccaggaacccatctctgggaagtgaggaagcatcaggaaatgg
aattgtgggaagtgaagctctgagcctctctcatcgtccacatcctgtga
gtggacaaatcacaggttcaaaagcaaactcatgaagaattgaaacacgt
gggagggtgaggcaggaggataatggtgaatttgaagccacacaatgaga
cttttttctcaataaacaaaaccagccaaccaaccaaataaaattctaaa
aaccaaataggtaaggggctcaagagaaggctcagggtaaagtgcttgcc
ctgcaaaccagaaggactgagtttagtcctcagaatccaaacaaagaatg
tcttgtgcctgtaaacccagcacttcccggggagatgagaggcagatacc
gaacaactgcctgaaagctcactggccagcttgctgcaagaaacacaggc
tttcctgactcataaacaaggggaaggaaagaacagacaactctccaaag
ttgccctctgacccccacaaacacgttgcggcgtgtgcttgcccccaacc
tatcaaatatgttttgaaaatccagaatgggtctagagagatgactcagc
agttagcagcacttgatagcttaactgaacccaggttcagttcccagcac
ccacacggtggatcacaaccctccttaactccactctctctaacctcaca
tgtagcagacatgcatgtggtgcacatatgtacatgtagtcagatattta
tattcattcagaaaaacattctttaaaaaaaaaagttcattagaattcaa
tttctgaaaggcagacctcttgtacagtgccctgggccactgaaacagac
cctcgagctagtattcattactgaaatgggaaagggattttgtaccaagc
caggtggtatatgccgctgatctgcagtagtcaacactatcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52586460_52587549
seq2: B6Ng01-089O13.b_48_1149 (reverse)

seq1  CAACAGAAAA-------GAA--AACAATCTACTTCTAGGAATG-CACTTC  40
      ||||||| ||       |||  ||  ||||||||||||||||| ||||||
seq2  CAACAGACAAATGCCACGAAAGAAACATCTACTTCTAGGAATGCCACTTC  50

seq1  AAGGCATTGACCTGGGCAAAACATTTCTGAAGAACATTCCAATGTCATAG  90
      |||||||||||||| ||||||||||||||||||||||||||   ||||||
seq2  AAGGCATTGACCTGAGCAAAACATTTCTGAAGAACATTCCATGTTCATAG  100

seq1  GAAATAATCCCAAGAATGAAAAAATTGAGTTGCATGAAAGTAAAAAGTTG  140
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAATAATCCCAAGAATG-AAAAATTGAGTTGCATGAAAGTAAAAAGTTG  149

seq1  CTACGTAGCAAAGAAAACCATTAGCAGACTG-AAGGGAAG-CCTTGGCAA  188
      |||||||||||||||||||| |||||||||| |||||||| |||||||||
seq2  CTACGTAGCAAAGAAAACCA-TAGCAGACTGAAAGGGAAGCCCTTGGCAA  198

seq1  ACGATTTGAATGGCTCACAGAGCATCTTACATTTTATTCCTGGATCGTGC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTGAATGGCTCACAGAGCATCTTACATTTTATTCCTGGATCGTGC  248

seq1  ACAGCTAAAATCACAGCTTTGAAGTGCTCAGCAATGCACACCAGTCCTTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAAATCACAGCTTTGAAGTGCTCAGCAATGCACACCAGTCCTTC  298

seq1  GGCAGAGGACTCATGAATATGTGCTT-AAGGC-TTTCTCTAAATTTATAT  336
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GGCAGAGGACTCATGAATATGTGCTTAAAGGCTTTTCTCTAAATTTATAT  348

seq1  TTGCTTTAAGTGGTCCTGAATCCAAGAATGTTTGTGCCTTCAAGTAGGGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAAGTGGTCCTGAATCCAAGAATGTTTGTGCCTTCAAGTAGGGG  398

seq1  AACAAAAATGAAGATTTTAAAACATAGCACTCCTTTTGTATGTAAACACG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATGAAGATTTTAAAACATAGCACTCCTTTTGTATGTAAACACG  448

seq1  TCCGTATGTTATAGGAAACATAGGGGATTTATATACAAAAAAAAAAAAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATGTTATAGGAAACATAGGGGATTTATATACAAAAAAAAAAAAAA  498

seq1  AAATGGACTAGCATTTAGAAAGAAAGATGGCCACTCCATTTTATCCCATC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACTAGCATTTAGAAAGAAAGATGGCCACTCCATTTTATCCCATC  548

seq1  TTCTTTGTCTTATCATTTCCGATGGCTGCATGGTATACAAATTGAGTTAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCTTATCATTTCCGATGGCTGCATGGTATACAAATTGAGTTAT  598

seq1  TACTGTCTTGTAGTGAGTTTTTCAAATTCTTACATACCATTTGGATATTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTTGTAGTGAGTTTTTCAAATTCTTACATACCATTTGGATATTA  648

seq1  GTTCCTGATAAGGTTTTCAAGTACTTGATCTTATTTTGTAGGCTTTCTCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGATAAGGTTTTCAAGTACTTGATCTTATTTTGTAGGCTTTCTCT  698

seq1  TCACTCTGTAAAGAGTTTTGCTTGGATGCCACCTTAGAGGGTGATGTCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTAAAGAGTTTTGCTTGGATGCCACCTTAGAGGGTGATGTCAG  748

seq1  TTTAGCACTACTGTACTTTGTAAGGAGAACTGTCCTGGAATGAATTCACA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCACTACTGTACTTTGTAAGGAGAACTGTCCTGGAATGAATTCACA  798

seq1  CAACAGCATAGAATCAAAGCACTGGGCTACAGGGCATCCAAAGACCAAGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCATAGAATCAAAGCACTGGGCTACAGGGCATCCAAAGACCAAGG  848

seq1  AGAGCTTTCCCTGCTTACTGGGGACTAGACCTATGTGATCTGTGAGCAGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTCCCTGCTTACTGGGGACTAGACCTATGTGATCTGTGAGCAGG  898

seq1  ACGTCCATGCAAAGTGCAAAAATGCAGTGAGTTTCGTGGAAGGGGAAGTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCATGCAAAGTGCAAAAATGCAGTGAGTTTCGTGGAAGGGGAAGTG  948

seq1  GAGGGGACTCATGTCTCAAAGGGTTCCCGGGGGAAAGTCATTGCTGAGCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACTCATGTCTCAAAGGGTTCCCGGGGGAAAGTCATTGCTGAGCC  998

seq1  AAACATAAGGTATTTGTAAAGGTGGAGCCTGCAGTTGGCTCACAGTGTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGGTATTTGTAAAGGTGGAGCCTGCAGTTGGCTCACAGTGTTT  1048

seq1  CTATGCTTGTGTTCAGGATGACTACATACGGATGCTGTTGGTGATGTGGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTGTGTTCAGGATGACTACATACGGATGCTGTTGGTGATGTGGA  1098

seq1  ATTC  1090
      ||||
seq2  ATTC  1102

seq1: chr3_52392654_52393852
seq2: B6Ng01-089O13.g_69_1263

seq1  GAATTCTTGGGCTTAGGGTAAGTCAAAAGTATGAGACCACAACCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCTTAGGGTAAGTCAAAAGTATGAGACCACAACCAATAGA  50

seq1  ATGTAGGTGGACTGTGAGGGACCCACTGTAAATCTCATTCTAGGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTGGACTGTGAGGGACCCACTGTAAATCTCATTCTAGGGGGTCT  100

seq1  CCTAGAGCTGGAGAGGTGAGATGTGACGTCTGACCCTTGAAGGTCTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCTGGAGAGGTGAGATGTGACGTCTGACCCTTGAAGGTCTAGCT  150

seq1  CAGAAGAGGTTCCATCTTGCCACATTCTAAGGGGCCTTGGGCACCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGTTCCATCTTGCCACATTCTAAGGGGCCTTGGGCACCTGTCT  200

seq1  GACACTATCTCTTCTTGTCTGTGCTGCAGCTGTTGCCTGAAGGAGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATCTCTTCTTGTCTGTGCTGCAGCTGTTGCCTGAAGGAGACTGA  250

seq1  GGTGAGACCAGGAACCCATCTCTGGGAAGTGAGGAAGCATCAGGAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGACCAGGAACCCATCTCTGGGAAGTGAGGAAGCATCAGGAAATGG  300

seq1  AATTGTGGGAAGTGAAGCTCTGAGCCTCTCTCATCGTCCACATCCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGGAAGTGAAGCTCTGAGCCTCTCTCATCGTCCACATCCTGTGA  350

seq1  GTGGACAAATCACAGGTTCAAAAGCAAACTCATGAAGAATTGAAACACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAATCACAGGTTCAAAAGCAAACTCATGAAGAATTGAAACACGT  400

seq1  GGGAGGGTGAGGCAGGAGGATAATGGTGAATTTGAAGCCACACAATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTGAGGCAGGAGGATAATGGTGAATTTGAAGCCACACAATGAGA  450

seq1  CTTTTTTCTCAATAAACAAAACCAGCCAACCAACCAAATAAAATTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTCAATAAACAAAACCAGCCAACCAACCAAATAAAATTCTAAA  500

seq1  AACCAAATAGGTAAGGGGCTCAAGAGAAGGCTCAGGGTAAAGTGCTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATAGGTAAGGGGCTCAAGAGAAGGCTCAGGGTAAAGTGCTTGCC  550

seq1  CTGCAAACCAGAAGGACTGAGTTTAGTCCTCAGAATCCAAACAAAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCAGAAGGACTGAGTTTAGTCCTCAGAATCCAAACAAAGAATG  600

seq1  TCTTGTGCCTGTAAACCCAGCACTTCCCGGGGAGATGAGAGGCAGATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCCTGTAAACCCAGCACTTCCCGGGGAGATGAGAGGCAGATACC  650

seq1  GAACAACTGCCTGAAAGCTCACTGGCCAGCTTGCTGCAAGAAACACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTGCCTGAAAGCTCACTGGCCAGCTTGCTGCAAGAAACACAGGC  700

seq1  TTTCCTGACTCATAAACAAGGGGAAGGAAAGAACAGACAACTCTCCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACTCATAAACAAGGGGAAGGAAAGAACAGACAACTCTCCAAAG  750

seq1  TTGCCCTCTGACCCCCACAAACACGTTGCGGCGTGTGCTTGCCCCCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCTGACCCCCACAAACACGTTGCGGCGTGTGCTTGCCCCCAACC  800

seq1  TATCAAATATGTTTTGAAAATCCAGAATGGGTCTAGAGAGATGACTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATATGTTTTGAAAATCCAGAATGGGTCTAGAGAGATGACTCAGC  850

seq1  AGTTAGCAGCACTTGATAGCTTAACTGAACCCAGGTTCAGTTCCAAGCAC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTAGCAGCACTTGATAGCTTAACTGAACCCAGGTTCAGTTCCCAGCAC  900

seq1  CCACACGGTGGATCACAACCCTCCTTAACTCCACTCTCTCTAACCTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGGTGGATCACAACCCTCCTTAACTCCACTCTCTCTAACCTCACA  950

seq1  TGTAGCAGACATGCATGTGGTGCACATATGTAACATGTAGGCAAGATATT  1000
      ||||||||||||||||||||||||||||||| |||||||| | |||||||
seq2  TGTAGCAGACATGCATGTGGTGCACATATGT-ACATGTAGTC-AGATATT  998

seq1  CATATCCA-TCAGAAAAAACATCTTTAAAAAAAAAAGTTCAATAGAA-TC  1048
       |||| || |||||||||   |||||||||||||||||||| ||||| ||
seq2  TATATTCATTCAGAAAAACATTCTTTAAAAAAAAAAGTTCATTAGAATTC  1048

seq1  CATTTCTGAAA-GCAGACCTC-TGTACAAGTGCCCT-GGCCACAG-AACA  1094
       |||||||||| ||||||||| ||||| |||||||| |||||| | ||||
seq2  AATTTCTGAAAGGCAGACCTCTTGTAC-AGTGCCCTGGGCCACTGAAACA  1097

seq1  GACCCTCAGAGGCTAAGTA-TCAGTAC-GAAATGGGAGAAAGGAGTTTTT  1142
      ||||||| || ||| |||| ||| ||| |||||||  |||||| | ||||
seq2  GACCCTC-GA-GCT-AGTATTCATTACTGAAATGG--GAAAGG-GATTTT  1141

seq1  GACACAAGCCAGGTTGAATAGACAGCAGATTCTGCAAGGTAGTCAACACT  1192
      |   |||||||||| | |||  | || || ||||||  ||||||||||||
seq2  GTACCAAGCCAGGTGGTATATGCCGCTGA-TCTGCA--GTAGTCAACACT  1188

seq1  AGCAGGA  1199
      | |||||
seq2  ATCAGGA  1195