BAC Information

Click to search

BAC

Clone NameB6Ng01-090B13
Chromosome3 (Build37)
Map Location 41,059,120 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B13.bB6Ng01-090B13.g
ACCDH902488DH902489
length9841,160
definitionDH902488|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B13, 5' end.DH902489|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctcagagccccattttttaatggggttattcgatt
ttctggagcccaccttcttgagttctttatatatattagatattagtccc
ctatccgatttaggatatgtaaagatcctttctcaatctgttggtggtct
ttttgtcttattgacagtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgaacttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccaaatcttcgaggctttcccctac
tttctcctctataagtttcagtgtctctggctttatgtgaagttccttga
tccacttagatttgatcttagtacaaggagataggaatggatcgattcga
attcttctacatgataacaaccagttgtgccagcaccctttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggtttatttctgggtcttcaattctattccattgg
tctatttgcctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtacagctttaggtaatgtattttcttaaggagctctggaattc
aatttacagaggctccttttaattttgtttaagtgtattcttttaggtat
gtaaaaggcaaaagtaaaagaacaagtagcaacttactgacaggttcctt
tcctagagaaagaccattttcagatttgaacgtgatactttctgttctta
cctgtcgaggaggaaagacatcattctgaaaccacttctatgcaggttct
tactacattcatgcagactttgccctactagcagttatttcttaagtttt
cccttctaaaagtatcatattaatagtatgtttaagtatttcattttttc
ttttccatagaggtatataatatattatatcatt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacacgatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagaagaaagtagccagagctaaaggatctgcaccctatag
tgaacacatatgagctaacagtaccccggagctctgactctagctgcata
ttaatcaaagatgctagtcgcatcactggaaagaggcaatggactgcact
ttatggccagtacagaaaattccaggccaaaaggggatgggtggccaggg
aatgtggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059120_41059737
seq2: B6Ng01-090B13.b_51_669 (reverse)

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  50

seq1  TATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAAC  100
      ||||||||||| |||  ||||||||||||||||||||||||| |||||| 
seq2  TATAGTGACAGGCAAATAGACCAATGGAATAGAATTGAAGACCCAGAAAT  100

seq1  GAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  150
       || |||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCA  150

seq1  TCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCAGTGGAAAAAAGACAGCATTTTCAACAAAGGGTGCTGGCACAACTGG  200

seq1  TTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTAC  250
      |||||||||||||||||||| ||||| |||||| ||||||||||||||||
seq2  TTGTTATCATGTAGAAGAATTCGAATCGATCCATTCCTATCTCCTTGTAC  250

seq1  TAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACAC  300
      |||| ||||||||||||||||||||||||  |||||||| ||||||||||
seq2  TAAGATCAAATCTAAGTGGATCAAGGAACTTCACATAAAGCCAGAGACAC  300

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACA  350
      |||||||||||||||||||||| ||| ||||||| |||||| |||  |||
seq2  TGAAACTTATAGAGGAGAAAGTAGGGGAAAGCCTCGAAGATTTGGGTACA  350

seq1  GGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAG  400
      ||||||||||||||| |||||||||||||||||||||||||||| | |||
seq2  GGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGTTCGAG  400

seq1  AATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAG  450
      ||| || |||||||||||||| ||| |||||||||||||||| |||||||
seq2  AATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAG  450

seq1  ACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTT  499
      |||| |||||||||||||||||  ||||||||||||| ||||||||||||
seq2  ACACTGTCAATAAGACAAAAAGACCACCAACAGATTGAGAAAGGATCTTT  500

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACT  549
      || ||||||||||| ||||||||||||||||| ||||||||| |||||||
seq2  ACATATCCTAAATCGGATAGGGGACTAATATCTAATATATATAAAGAACT  550

seq1  CAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  599
      |||||||||||  ||||||||||| |||||||||||||||||||||||||
seq2  CAAGAAGGTGGGCTCCAGAAAATCGAATAACCCCATTAAAAAATGGGGCT  600

seq1  CAGAGCTAAACAAAGAATT  618
      | ||||| |||||||||||
seq2  CTGAGCTGAACAAAGAATT  619