BAC Information

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BAC

Clone NameB6Ng01-090B23
Chromosome3 (Build37)
Map Location 132,378,591 - 132,572,529
singlet/doubletdoublet
Overlap geneA630047E20Rik, LOC668858, Npnt
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B23.bB6Ng01-090B23.g
ACCDH902508DH902509
length1,042564
definitionDH902508|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B23, 5' end.DH902509|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,378,591 - 132,379,656)(132,572,251 - 132,572,529)
sequence
gaattcccaaaactactgatcatgtgccaagtgaaaaaccattgccttct
ggccccaaatcagatgtatggtctcttgggataattttatttgagctttg
tgtggtatgtataaagaaatattaaactaataaaataatttgtgtgatca
ttagcatttgctttttagagaggaagtttacacagtaataaaatattttg
ttgtacaaattgactagatataaatagactattttatcagagctcatagt
tatatttcagtctataacgtttgaagggtacagtgttgaacgaattcaat
aaaaggaaagtttcgtttttctatgagttttatgtcacttggttatgtcc
ttagtttgggcatccagtgcaagtatgacaggctacatttaagtctaaat
agtctgtataaatcaacacttagaattttatagacaatattaagatacaa
gtgaatgtcataccagcaactagcaaatggaactttttgtgtagtaggaa
tatttttttaaaatgagtggaaagctgtatcaaaatcatactggaaggaa
gtgtttactctgtcactaagaatgtggcagagccatgctgccatgagacg
ttcccactgctgcagtgtgtgggagagggctgtggtactgatgagaaaat
gagaaaaaaacataagcagtaatatccacagtaagaaagaaacagctaat
agaggaattatagcattaaaactttaaaataaaaccacattttctaaaac
ataaggtaattaagctcattaagcaattatataaactatcaagaaaacaa
agttttaatgaaatatatgcaattattaaaacaagaatgtaataaattct
aggaaactggaaaaactagaagtagaaatccttctcaaagcatttgtacg
caaggataaagagattgcaatattaagttaaaagaaagaagagtacccag
atgtctacatctgtatatggaaatatcaaagtagaaaacaagtcctcttt
gagcacaggtctttaatggaaaaataaactcataacacaaaa
atctggtctgttcaaaaatattcctcagaccatttttataagatgattta
agaattatcaaaaaactgttttaagtggaaatgaatataacatcaggaaa
aattattattatttttataaatagggtctcatatatcccaggctagcctt
gaacatgatatatatatacatatacatatatatatatatatatatatata
tatatatatatgtatatgtatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatagcggta
cctacttatgtgtctctaaaaagatgacggtctggcgggcgcgatgtata
cacacatgtatatatagagagatcgagacggcatatatatatatatatat
atatatatatagatatatatatatatatatatatatatatatgtatatat
atatattatatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132378591_132379656
seq2: B6Ng01-090B23.b_45_1086

seq1  GAATTCCCAAAACTACTGATCATGTGCCAAGTGAAAAACCATTGCCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAACTACTGATCATGTGCCAAGTGAAAAACCATTGCCTTCT  50

seq1  GGCCCCAAATCAGATGTATGGTCTCTTGGGATAATTTTATTTGAGCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAATCAGATGTATGGTCTCTTGGGATAATTTTATTTGAGCTTTG  100

seq1  TGTGGTATGTATAAAGAAATATTAAACTAATAAAATAATTTGTGTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGTATAAAGAAATATTAAACTAATAAAATAATTTGTGTGATCA  150

seq1  TTAGCATTTGCTTTTTAGAGAGGAAGTTTACACAGTAATAAAATATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTGCTTTTTAGAGAGGAAGTTTACACAGTAATAAAATATTTTG  200

seq1  TTGTACAAATTGACTAGATATAAATAGACTATTTTATCAGAGCTCATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAATTGACTAGATATAAATAGACTATTTTATCAGAGCTCATAGT  250

seq1  TATATTTCAGTCTATAACGTTTGAAGGGTACAGTGTTGAACGAATTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAGTCTATAACGTTTGAAGGGTACAGTGTTGAACGAATTCAAT  300

seq1  AAAAGGAAAGTTTCGTTTTTCTATGAGTTTTATGTCACTTGGTTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGTTTCGTTTTTCTATGAGTTTTATGTCACTTGGTTATGTCC  350

seq1  TTAGTTTGGGCATCCAGTGCAAGTATGACAGGCTACATTTAAGTCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGGGCATCCAGTGCAAGTATGACAGGCTACATTTAAGTCTAAAT  400

seq1  AGTCTGTATAAATCAACACTTAGAATTTTATAGACAATATTAAGATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATAAATCAACACTTAGAATTTTATAGACAATATTAAGATACAA  450

seq1  GTGAATGTCATACCAGCAACTAGCAAATGGAACTTTTTGTGTAGTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTCATACCAGCAACTAGCAAATGGAACTTTTTGTGTAGTAGGAA  500

seq1  TATTTTTTTAAAATGAGTGGAAAGCTGTATCAAAATCATACTGGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAAAATGAGTGGAAAGCTGTATCAAAATCATACTGGAAGGAA  550

seq1  GTGTTTACTCTGTCACTAAGAATGTGGCAGAGCCATGCTGCCATGAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACTCTGTCACTAAGAATGTGGCAGAGCCATGCTGCCATGAGACG  600

seq1  TTCCCACTGCTGCAGTGTGTGGGAGAGGGCTGTGGTACTGATGAGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGCTGCAGTGTGTGGGAGAGGGCTGTGGTACTGATGAGAAAAT  650

seq1  GAGAAAAAAACATAAGCAGTAATATCCACAGTAAGAAAGAAACAGCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAACATAAGCAGTAATATCCACAGTAAGAAAGAAACAGCTAAT  700

seq1  AGAGGAATTATAGCATTAAAACTTTAAAATAAAACCACATTTTCTAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATTATAGCATTAAAACTTTAAAATAAAACCACATTTTCTAAAAC  750

seq1  ATAAGGTAATTAAGCTCATTAAGCAATTATATAAACTATCAAGAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTAATTAAGCTCATTAAGCAATTATATAAACTATCAAGAAAACAA  800

seq1  AGTTTTAATGAAATATATGCAATTATTAAAACAAAGAATGTAATAAATTC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTTTTAATGAAATATATGCAATTATTAAAAC-AAGAATGTAATAAATTC  849

seq1  TAGGAAACTGGAAAAACTAGAAGTAGAAATCCTCCCAAAAGCATTTGTAC  900
      ||||||||||||||||||||||||||||||||| |  |||||||||||||
seq2  TAGGAAACTGGAAAAACTAGAAGTAGAAATCCTTCTCAAAGCATTTGTAC  899

seq1  GCAAGGATAAAGAGATTGCAAATATTAAAGTTAAAAGGAAAGGAAGAAGT  950
      ||||||||||||||||||| |||||| ||||||||||  || |||| |||
seq2  GCAAGGATAAAGAGATTGC-AATATT-AAGTTAAAAG--AAAGAAG-AGT  944

seq1  ACCCAGATGTTCTAACATCTGTATAATGGAAATATCAAAAGTAGAAAACA  1000
      ||||||||| ||| |||||||||| ||||||||||| |||||||||||| 
seq2  ACCCAGATG-TCT-ACATCTGTAT-ATGGAAATATC-AAAGTAGAAAAC-  989

seq1  AAGCCCTCCTTTTGGAAGCACAGGGTCTTTTAAATGGAAAAAATAAAAAC  1050
      ||| ||||  ||||  |||||| |||||||  |||||||||   | ||||
seq2  AAGTCCTC--TTTG--AGCACA-GGTCTTT--AATGGAAAA---ATAAAC  1029

seq1  TCATAAACCAACAAAA  1066
      ||||||    ||||||
seq2  TCATAA---CACAAAA  1042

seq1: chr3_132572251_132572529
seq2: B6Ng01-090B23.g_65_633 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATATATAATATATATATATACATATATATATATATATATATATATATATA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCTATATATATATATATATATATATATATATGCCGTCTCGATCTCTCTAT  100

seq1  --------------------------------------------------  0
                                                        
seq2  ATATACATGTGTGTATACATCGCGCCCGCCAGACCGTCATCTTTTTAGAG  150

seq1  --------------------------------------------------  0
                                                        
seq2  ACACATAAGTAGGTACCGCTATATATATATATATATATATATATATATAT  200

seq1  --------------------------------------------------  0
                                                        
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  250

seq1  ----------------------------------------ATATATATAT  10
                                              ||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  300

seq1  ATATATATATACATATACATATATATATATATATATATATATATACATAT  60
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATACATAT  350

seq1  ACATATATATATATATATATATATATATATATATATATGTATATGTATAT  110
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATATATATATATATATATATATATATGTATATGTATAT  400

seq1  ATATATCATGTTCAAGGCTAGCCTGGGATATATGAGACCCTATTTATAAA  160
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATGTTCAAGGCTAGCCTGGGATATATGAGACCCTATTTATAAA  450

seq1  AATAATAATAATTTTTCCTGATGTTATATTCATTTCCACTTAAAACAGTT  210
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATTTTTCCTGATGTTATATTCATTTCCACTTAAAACAGTT  500

seq1  TTTTGATAATTCTTAAATCATCTTATAAAAATGGTCTGAGGAATATTTTT  260
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAATTCTTAAATCATCTTATAAAAATGGTCTGAGGAATATTTTT  550

seq1  GAACAGACCAGATGAATTC  279
      |||||||||||||||||||
seq2  GAACAGACCAGATGAATTC  569