BAC Information

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BAC

Clone NameB6Ng01-090D05
Chromosome3 (Build37)3 (Build37)
Map Location 100,734,055 - 100,734,172113,898,699 - 113,899,601
singlet/doubletsingletsinglet
Overlap geneTrim45
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1
Downstream geneTtf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D05.bB6Ng01-090D05.g
ACCDH902566DH902567
length459904
definitionDH902566|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D05, 5' end.DH902567|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,734,055 - 100,734,172)(113,898,699 - 113,899,601)
sequence
aaattatttagacaaatatttaaagccatctgttgtcattacttgcccat
cttttctagatcaaagccaattgtctagaaaaaaattcatgctaacatta
aaaatgttcttttgctggagccatgggtccccccatgtgtacactttggt
tagtggtttagtccctgagagctttgggggttctgattggttgatttgtt
gttcttcctatgggtttgcaaaccccttcagttccttcagtccttgccct
aacttctccattgagattcctgtgctcagtccaatgtttggctgctcgga
aatgtagcagaggattgctatatcgggcatcactgggaggggaaccactt
ggtcatgtggaagctaaatgacccagggtaggggaatgctagggcactaa
ggcagaagtgggtgggtgggtgggggagcaccctcatagagtcagggtag
ggggtaggg
gaattcctgtattagagtgaggcgtttaattttgattgggcatgttaatt
aaggtaaatacaaggagcttttgatgctgaactttaatggtttgatagct
ggatcttggcagttagcctcaggagaaagtgggcaataagcaaatagacc
ttgatggctagtttgaggaatatgatgtaaatttttagcaacatagaagg
aatggggagaagggtaaaaagacaaaacttgctggctgcatgtgttggta
actggataaatggtgtcagatctttaattgacctgaagcaggacattact
atttatctactctcattatcataaaaattgagccctgggtgaatttgagt
cagttccaggtctgcactagtatttagaaaatatttccctttgatgtagt
gaacgcctaactacagattctgagtctggtagcaaaatgttttccctaag
tatctccctaaaatttaccagggttattttttttctttttatgttatatt
ttccaataagtattctgacctttcgacagatgaaatagaagacagttatt
agagatttcctttagctaatgttaaaaataaaaccatcagacataccagc
tgattaaagtctgcaaaatttgtatttctaatgcttaagcaaatgtttga
gtataagaaagctgaacaattcaaattctatttagaaaattgcagttgta
agcatcaagaaggaccaacatggatctactaattttcatatctactgggt
tcactggataataacactatgtgaataatagtgaaatatagatatagata
cagatatagatatagatatagatatagatatagatataggtatagattta
gatatagatataatctttttaatgactctagtacctgaaaagtgtttttt
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100734055_100734172
seq2: B6Ng01-090D05.b_167_283 (reverse)

seq1  TGAAGGGGTTTGCAACCCCATAGGAAGAACA--ATATCCATCAA-CAGAC  47
      ||||||||||||||| |||||||||||||||  | ||| | ||| |||| 
seq2  TGAAGGGGTTTGCAAACCCATAGGAAGAACAACAAATCAACCAATCAGAA  50

seq1  CCCCCAGAACTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAG  97
      |||||| | ||| ||||||||||||||| |||||||| ||||||||    
seq2  CCCCCAAAGCTCTCAGGGACTAAACCACTAACCAAAGTGTACACAT----  96

seq1  GGAGGGACCCATGGCTCCAGC  118
      || ||||||||||||||||||
seq2  GGGGGGACCCATGGCTCCAGC  117

seq1: chr3_113898699_113899601
seq2: B6Ng01-090D05.g_69_972

seq1  GAATTCCTGTATTAGAGTGAGGCGTTTAATTTTGATTGGGCATGTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATTAGAGTGAGGCGTTTAATTTTGATTGGGCATGTTAATT  50

seq1  AAGGTAAATACAAGGAGCTTTTGATGCTGAACTTTAATGGTTTGATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATACAAGGAGCTTTTGATGCTGAACTTTAATGGTTTGATAGCT  100

seq1  GGATCTTGGCAGTTAGCCTCAGGAGAAAGTGGGCAATAAGCAAATAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGGCAGTTAGCCTCAGGAGAAAGTGGGCAATAAGCAAATAGACC  150

seq1  TTGATGGCTAGTTTGAGGAATATGATGTAAATTTTTAGCAACATAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCTAGTTTGAGGAATATGATGTAAATTTTTAGCAACATAGAAGG  200

seq1  AATGGGGAGAAGGGTAAAAAGACAAAACTTGCTGGCTGCATGTGTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAGAAGGGTAAAAAGACAAAACTTGCTGGCTGCATGTGTTGGTA  250

seq1  ACTGGATAAATGGTGTCAGATCTTTAATTGACCTGAAGCAGGACATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAAATGGTGTCAGATCTTTAATTGACCTGAAGCAGGACATTACT  300

seq1  ATTTATCTACTCTCATTATCATAAAAATTGAGCCCTGGGTGAATTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTACTCTCATTATCATAAAAATTGAGCCCTGGGTGAATTTGAGT  350

seq1  CAGTTCCAGGTCTGCACTAGTATTTAGAAAATATTTCCCTTTGATGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGGTCTGCACTAGTATTTAGAAAATATTTCCCTTTGATGTAGT  400

seq1  GAACGCCTAACTACAGATTCTGAGTCTGGTAGCAAAATGTTTTCCCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCCTAACTACAGATTCTGAGTCTGGTAGCAAAATGTTTTCCCTAAG  450

seq1  TATCTCCCTAAAATTTACCAGGGTTATTTTTTTTCTTTTTATGTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCTAAAATTTACCAGGGTTATTTTTTTTCTTTTTATGTTATATT  500

seq1  TTCCAATAAGTATTCTGACCTTTCGACAGATGAAATAGAAGACAGTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAAGTATTCTGACCTTTCGACAGATGAAATAGAAGACAGTTATT  550

seq1  AGAGATTTCCTTTAGCTAATGTTAAAAATAAAACCATCAGACATACCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCCTTTAGCTAATGTTAAAAATAAAACCATCAGACATACCAGC  600

seq1  TGATTAAAGTCTGCAAAATTTGTATTTCTAATGCTTAAGCAAATG-TTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATTAAAGTCTGCAAAATTTGTATTTCTAATGCTTAAGCAAATGTTTGA  650

seq1  GTATAAGAAAGCTGAACAATTCAAATTCTATTTAGAAAATTGCAGTTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAAAGCTGAACAATTCAAATTCTATTTAGAAAATTGCAGTTGTA  700

seq1  AGCATCAAGAAGGACCAACATGGATCTACTAA-TTTCATATCTACTGGGT  748
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCATCAAGAAGGACCAACATGGATCTACTAATTTTCATATCTACTGGGT  750

seq1  TCACTGGATAATAACACTATGTGAATAATAGTGAAATATAGATATAGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGATAATAACACTATGTGAATAATAGTGAAATATAGATATAGATA  800

seq1  CAGATATAGATATAGATATAGATATAGATATAGATATAGGTATAGATATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGATATAGATATAGATATAGATATAGATATAGATATAGGTATAGATTTA  850

seq1  GATATAGATATAATCTTTTTAAATGACTCTAGTACCTGAAAAGTGTTTCT  898
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GATATAGATATAATCTTTTT-AATGACTCTAGTACCTGAAAAGTGTTTTT  899

seq1  TTTTT  903
      |||||
seq2  TTTTT  904