BAC Information

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BAC

Clone NameB6Ng01-090D09
Chromosome3 (Build37)
Map Location 38,892,114 - 39,052,964
singlet/doubletdoublet
Overlap geneFat4
Upstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D09.bB6Ng01-090D09.g
ACCDH902574DH902575
length1,1611,143
definitionDH902574|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D09, 5' end.DH902575|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,892,114 - 38,893,277)(39,051,816 - 39,052,964)
sequence
gaattccaatacatcattccaagctgcacagactgaattagaaggaaaag
taatttgccttcttaaattgaatgtgggtgacacactcagaaagaagcgg
cagatggaaatgcctcaaaaacctgaggtggtaacacacagtgtggtgag
acacgcaccccaaactctagattccctagggcttcaaagctggaaaaact
gttctattcatagtctcattcaccaaaatccattctttagatttcaatat
atttttagattcatagatatataggtagatagatgatagatagataagta
gatgatagataaacagatgatagataatagaaaaatagatgaaagaaaga
tatataagtgaaagatagatgcattgtattgcatatgttatatatatgca
agagctgtgtgtgtgtggtcacacagcaacttgtaaactatcctgtgtgt
gtgtgtgtgtgtgtgtacttatatataattactaaattatacttatatat
aattactaaatattttataattatagatctctttatctggattatttcac
acagacatttggaagagaaatgttaaagacataaattttactttatattt
taagatgggagatatccctttcacagaaatagtaaaaaaaactcttcaag
acaaatctatatacatatttttatatttgaaaatatggtgtaagtttgaa
tacaaatgcaaaactcattgtctaatatctatacattttcacctacattt
aaacttttgtatttttgtgtattagttacaatataacaggaaaaggccca
tagaaacacactgtatgtatgatttacctttgcttttttattaagcttca
ttactccttgcttgtagaaataatatacagtgtaatttctaactaatcca
tgagcattactgtttatttgtataaataatatgcaacacaaattcataaa
taataaataatgtagaatataagtcatggcatattaaaggttacctatac
attataatactttatgtgtatatctcagtttttctccttaactttgttag
agtaaaacatcttagttattttgattgacagtcatccctgcctgtacgta
atgacagatacctggtgtaggcacttgcaaactcttcctagcccatttta
ttcttcaaaaa
gaattcttactgtagaaccacaaaatactagagctaaaagacctaagacc
atactgacacatagagcatattagaccagtgggaccttgaatataaggca
aaatgggtcaccattcatcaggagactatattagtaagatttaatggggt
agttaagatgcaaccaggacttatgaatattcccacacctgtctgtcagc
ccaggatttggaatgaagagataggaggaaggtagtgagcaaggaaagaa
agtaatgaagaaacaaacaaacaaacaacaacaacaaagagcaaagaatg
aagagagacacgatgtgcagggaagaaaaacagactcttaaacaagacat
ttctgaggtccaacaaaagcaaacctccaaagggattttggaagtctctt
gatgagataaaagaagtcagcttatatgtaaccttctagattacagtttg
cttgtgataaaactttgaacagctctctaccaggaaatagtgaagaagtt
agccgtattgcaaaacttcacagacatgtattgagaatgatatggtgatg
cccactataacacagcagcaggagagcagaagtatcaagttcaagaccag
cctgagctatgttcactcctgttcagtccccagttaagcccaacatacat
taagtatggaacagatctatggattttaaagatgaaaaagaaaaggaaag
agaacttaccaaggctgtgtttaacttggcaaagagttaggaaaaaacat
ccaatttcctccaagccagtaaatggctggctgtgccaaagaggcccgac
tgatccatctctttctcttttttgtggtcccagctctaggttcaagagta
ccggatgctcagaaaccaagggagggacgtaaaggtgtctgtatctgtga
aggattgtgcctctgtggttgaactgttcggtgaagatcctttgccattt
gcctagatttatgcaaaagcctctgctgttatcttgtcacttctagcttt
ctatgttctataaacttgctcgaatgattgggaaatcagtgtgattcatc
tgtctaaactttgcagtgtgtcaatacttttcaaatatatctcttctgca
ttgtggcaggactgcaagacaaacccaagtgtttcagtgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38892114_38893277
seq2: B6Ng01-090D09.b_50_1210

seq1  GAATTCCAATACATCATTCCAAGCTGCACAGACTGAATTAGAAGGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATACATCATTCCAAGCTGCACAGACTGAATTAGAAGGAAAAG  50

seq1  TAATTTGCCTTCTTAAATTGAATGTGGGTGACACACTCAGAAAGAAGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCCTTCTTAAATTGAATGTGGGTGACACACTCAGAAAGAAGCGG  100

seq1  CAGATGGAAATGCCTCAAAAACCTGAGGTGGTAACACACAGTGTGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAAATGCCTCAAAAACCTGAGGTGGTAACACACAGTGTGGTGAG  150

seq1  ACACGCACCCCAAACTCTAGATTCCCTAGGGCTTCAAAGCTGGAAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACCCCAAACTCTAGATTCCCTAGGGCTTCAAAGCTGGAAAAACT  200

seq1  GTTCTATTCATAGTCTCATTCACCAAAATCCATTCTTTAGATTTCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTCATAGTCTCATTCACCAAAATCCATTCTTTAGATTTCAATAT  250

seq1  ATTTTTAGATTCATAGATATATAGGTAGATAGATGATAGATAGATAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGATTCATAGATATATAGGTAGATAGATGATAGATAGATAAGTA  300

seq1  GATGATAGATAAACAGATGATAGATAATAGAAAAATAGATGAAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGATAAACAGATGATAGATAATAGAAAAATAGATGAAAGAAAGA  350

seq1  TATATAAGTGAAAGATAGATGCATTGTATTGCATATGTTATATATATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTGAAAGATAGATGCATTGTATTGCATATGTTATATATATGCA  400

seq1  AGAGCTGTGTGTGTGTGGTCACACAGCAACTTGTAAACTATCCTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGTGTGTGTGGTCACACAGCAACTTGTAAACTATCCTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTACTTATATATAATTACTAAATTATACTTATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTACTTATATATAATTACTAAATTATACTTATATAT  500

seq1  AATTACTAAATATTTTATAATTATAGATCTCTTTATCTGGATTATTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAAATATTTTATAATTATAGATCTCTTTATCTGGATTATTTCAC  550

seq1  ACAGACATTTGGAAGAGAAATGTTAAAGACATAAATTTTACTTTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTTGGAAGAGAAATGTTAAAGACATAAATTTTACTTTATATTT  600

seq1  TAAGATGGGAGATATCCCTTTCACAGAAATAGTAAAAAAAACTCTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGGAGATATCCCTTTCACAGAAATAGTAAAAAAAACTCTTCAAG  650

seq1  ACAAATCTATATACATATTTTTATATTTGAAAATATGGTGTAAGTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTATATACATATTTTTATATTTGAAAATATGGTGTAAGTTTGAA  700

seq1  TACAAATGCAAAACTCATTGTCTAATATCTATACA-TTTCACCTACATTT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACAAATGCAAAACTCATTGTCTAATATCTATACATTTTCACCTACATTT  750

seq1  AAAC-TTTGTATTTTTGTGTATTAGTTACAATATAACAGGAAAAGGCCCA  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGTATTTTTGTGTATTAGTTACAATATAACAGGAAAAGGCCCA  800

seq1  TAGAAACACACTGTATGTATGATTTACCTTTGC-TTTTTATTAAGCTTCA  847
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGAAACACACTGTATGTATGATTTACCTTTGCTTTTTTATTAAGCTTCA  850

seq1  TTACTCCTTGCTTGTAGAAATAATATACAGTGTAATTTCTAACTAATCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTTGCTTGTAGAAATAATATACAGTGTAATTTCTAACTAATCCA  900

seq1  TGAGCATTACTGTTTATTTGTATAAATAATATGCAACACAAATTCATAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTACTGTTTATTTGTATAAATAATATGCAACACAAATTCATAAA  950

seq1  ATATAAATAATGTAG-ATATAAGTCAATGGCATATTAAAGGTTACCTATA  996
        ||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TAATAAATAATGTAGAATATAAGTC-ATGGCATATTAAAGGTTACCTATA  999

seq1  CATTATATTAC-TTATGTGTATATCCTCCAGTTTTTTCTCCTTAACTTTG  1045
      ||||||| ||| |||||||||||||   ||| ||||||||||||||||||
seq2  CATTATAATACTTTATGTGTATATC--TCAG-TTTTTCTCCTTAACTTTG  1046

seq1  GTTTAAGAGTAAAACCAGTCCTAGTCA-TTTGATTGACTGTCATCCCTGC  1094
         | ||||||||||   || |||| | |||||||||| |||||||||||
seq2  ---TTAGAGTAAAAC--ATCTTAGTTATTTTGATTGACAGTCATCCCTGC  1091

seq1  CTGGACAGAAAAATGACAAGATAACCTGTGTAGGCAC-TGCAAACTC-TC  1142
      ||| ||     |||||| ||||| |  |||||||||| ||||||||| ||
seq2  CTGTAC---GTAATGAC-AGATACCTGGTGTAGGCACTTGCAAACTCTTC  1137

seq1  CTAGGCCATTTTAT--CTCAAAAA  1164
      |||| |||||||||   |||||||
seq2  CTAGCCCATTTTATTCTTCAAAAA  1161

seq1: chr3_39051816_39052964
seq2: B6Ng01-090D09.g_71_1213 (reverse)

seq1  TATGCACTGAAACACTGGGGTCTGTCCTGCAGGGTCCTGGCCACAGTGCA  50
      |||||||||||||||| |||| |||| ||||  ||||| |||||| ||||
seq2  TATGCACTGAAACACTTGGGTTTGTCTTGCA--GTCCT-GCCACAATGCA  47

seq1  GAAAGGAGAATATATTTTGAAAAGGTATGACAACCACTGCAAAGTTTTAG  100
      |||  ||| ||||| |||||||||   |||||  |||||||||| |||||
seq2  GAA--GAG-ATATA-TTTGAAAAGTATTGACA--CACTGCAAAG-TTTAG  90

seq1  ACAGATGAATCACACTGATTTCCCAATCCATTCGAGCAAGTTTATAGAAA  150
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  ACAGATGAATCACACTGATTTCCCAAT-CATTCGAGCAAGTTTATAG-AA  138

seq1  CATAGAAAGCTTAGAAGTGACAAGATAACAGCAGAGGCTTTTGCATAAAT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAGC-TAGAAGTGACAAGATAACAGCAGAGGCTTTTGCATAAAT  187

seq1  CTAGGC-AATGGCAAAGGATC-TCACCGAACAGTTCAACCACAGAGGCAC  248
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAGGCAAATGGCAAAGGATCTTCACCGAACAGTTCAACCACAGAGGCAC  237

seq1  -ATCCTTCACAGATACAGACACC-TTACGT-CCTTCCTTGGTTTCTGAGC  295
       |||||||||||||||||||||| |||||| ||| |||||||||||||||
seq2  AATCCTTCACAGATACAGACACCTTTACGTCCCTCCCTTGGTTTCTGAGC  287

seq1  AT-CGGTACTCTTGAACCTAGAGCTGGGACCACAAAAAGGAGAAAGAGAT  344
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCGGTACTCTTGAACCTAGAGCTGGGACCACAAAAAAGAGAAAGAGAT  337

seq1  GGATCAGTCGGGCCTCTTTGGCACAGCCAGCCATTTACTGGCTTGGAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGTCGGGCCTCTTTGGCACAGCCAGCCATTTACTGGCTTGGAGGA  387

seq1  AATTGGATGTTTTTTCCTAACTCTTTGCCAAGTT-AACACAGCCTTGGTA  443
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTGGATGTTTTTTCCTAACTCTTTGCCAAGTTAAACACAGCCTTGGTA  437

seq1  AGTTCTCTTTCCTTTTCTTTTTCATCTTTAAAATCCATAGATCTGTTCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTTTCCTTTTCTTTTTCATCTTTAAAATCCATAGATCTGTTCCA  487

seq1  TACTTAATGTATGTTGGGCTTAACTGGGGACTGAACAGGAGTGAACATAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATGTATGTTGGGCTTAACTGGGGACTGAACAGGAGTGAACATAG  537

seq1  CTCAGGCTGGTCTTGAACTTGATACTTCTGCTCTCCTGCTGCTGTGTTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGGTCTTGAACTTGATACTTCTGCTCTCCTGCTGCTGTGTTAT  587

seq1  AGTGGGCATCACCATATCATTCTCAATACATGTCTGTGAAGTTTTGCAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCATCACCATATCATTCTCAATACATGTCTGTGAAGTTTTGCAAT  637

seq1  ACGGCTAACTTCTTCACTATTTCCTGGTAGAGAGCTGTTCAAAGTTTTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTAACTTCTTCACTATTTCCTGGTAGAGAGCTGTTCAAAGTTTTAT  687

seq1  CACAAGCAAACTGTAATCTAGAAGGTTACATATAAGCTGACTTCTTTTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAAACTGTAATCTAGAAGGTTACATATAAGCTGACTTCTTTTAT  737

seq1  CTCATCAAGAGACTTCCAAAATCCCTTTGGAGGTTTGCTTTTGTTGGACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAGAGACTTCCAAAATCCCTTTGGAGGTTTGCTTTTGTTGGACC  787

seq1  TCAGAAATGTCTTGTTTAAGAGTCTGTTTTTCTTCCCTGCACATCGTGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGTCTTGTTTAAGAGTCTGTTTTTCTTCCCTGCACATCGTGTC  837

seq1  TCTCTTCATTCTTTGCTCTTTGTTGTTGTTGTTTGTTTGTTTGTTTCTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATTCTTTGCTCTTTGTTGTTGTTGTTTGTTTGTTTGTTTCTTC  887

seq1  ATTACTTTCTTTCCTTGCTCACTACCTTCCTCCTATCTCTTCATTCCAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTCTTTCCTTGCTCACTACCTTCCTCCTATCTCTTCATTCCAAA  937

seq1  TCCTGGGCTGACAGACAGGTGTGGGAATATTCATAAGTCCTGGTTGCATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTGACAGACAGGTGTGGGAATATTCATAAGTCCTGGTTGCATC  987

seq1  TTAACTACCCCATTAAATCTTACTAATATAGTCTCCTGATGAATGGTGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACCCCATTAAATCTTACTAATATAGTCTCCTGATGAATGGTGAC  1037

seq1  CCATTTTGCCTTATATTCAAGGTCCCACTGGTCTAATATGCTCTATGTGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCCTTATATTCAAGGTCCCACTGGTCTAATATGCTCTATGTGT  1087

seq1  CAGTATGGTCTTAGGTCTTTTAGCTCTAGTATTTTGTGGTTCTACAGTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGTCTTAGGTCTTTTAGCTCTAGTATTTTGTGGTTCTACAGTAA  1137

seq1  GAATTC  1149
      ||||||
seq2  GAATTC  1143