BAC Information

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BAC

Clone NameB6Ng01-090D20
Chromosome3 (Build37)
Map Location 77,398,592 - 77,529,956
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D20.bB6Ng01-090D20.g
ACCDH902596DH902597
length587908
definitionDH902596|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D20, 5' end.DH902597|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,529,408 - 77,529,956)(77,398,592 - 77,399,426)
sequence
atatagcatcatgtccagttaacgtttctataggatttatggacatggaa
acaaatgggtgtctgaatattgagccttcttttagtctctttccttctgg
aagtttgccttgtataactttgatgtgatagtatttgctttgcattatta
tattttcttttagaagagaaagaaagaaagaaagaaagaaagagagagag
agagagagagagagagagagagagagagagagagacagagagagagagag
aaagaaagaaagaaagaaagaaagaaagaaaggaaggaagaaaggaagaa
agaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaatagatgaaaagctagccaatagcccaaaagttaag
ttaacaactgaactggtacttatacttcttgagagaggtatacgttgttt
tttgtttgtttgtttgttgtttttgtttttgtttgttattaataaagcaa
ccactactggttagaccctgtgttaggaagagttgaacaatatataaatg
aattccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcatgcagaaattttatttcagccttccatgaagtctccacacctt
ttattgttaattttccaattaattatagatttatttatgcctcttgtaga
ccaagctgtcagtggatatacagttgttatctcaatctgttctctagccc
tttcatataaatggtgttatacattcatttttactgaaaatagtattttt
catacaatgcatttgatcacggtatctcctacatcatgtcctcccagatc
ttttctatcttcccatacagctaactccataacgatctctatttcattcg
aaagtacagacacacacacaaaacatatacataacacacacacacagaca
tacacacagagacacacacagtcacatgcacatgaacaccacaaaaaata
caacattggaagacataatttacaaacaatagaggagtaaagttttaaaa
aaggcccaaataaagcaatatgaagtaaaaataaataaataaataaataa
ataaataaatacaaccttcaaaaatatcattgacttggttttgttgtcag
tctgtgattaggcatggaacctgcccttttttcactaagattcccttgaa
gaaatcaaaattttcttttgtgagtggttatcaattggaggtagtttctt
ggttagggattggaggtcttgtctacttatatatacctcagtaccaacaa
cccatcctggcttggtcctgtgcaggctgtgtgcatactcccacagtctt
tttgagatcatacatgtgtcattcctatgggttggcaaaacatgcttttt
ccagtaacacacattccctcctcctcatatctttctgccttgtcttcctc
atagtttcaggaaccctgagaagagagtttgatgaagacactaactcaga
ctgagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77529408_77529956
seq2: B6Ng01-090D20.b_90_638 (reverse)

seq1  ACACACACACACACACACACACACACACACTGGAATTCATTTATATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACTGGAATTCATTTATATATTG  50

seq1  TTCAACTCTTCCTAACACAGGGTCTAACCAGTAGTGGTTGCTTTATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCTTCCTAACACAGGGTCTAACCAGTAGTGGTTGCTTTATTAAT  100

seq1  AACAAACAAAAACAAAAACAACAAACAAACAAACAAAAAACAACGTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAACAAAAACAACAAACAAACAAACAAAAAACAACGTATAC  150

seq1  CTCTCTCAAGAAGTATAAGTACCAGTTCAGTTGTTAACTTAACTTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAGAAGTATAAGTACCAGTTCAGTTGTTAACTTAACTTTTGGG  200

seq1  CTATTGGCTAGCTTTTCATCTATTCTTTCTTTCTTTCTTTCTTTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCTAGCTTTTCATCTATTCTTTCTTTCTTTCTTTCTTTCTTTCT  250

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTCCTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTCCTTTCTT  300

seq1  CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC  350

seq1  TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  400

seq1  TTTCTTTCTTTCTTTCTTTCTCTTCTAAAAGAAAATATAATAATGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTCTTCTAAAAGAAAATATAATAATGCAAAG  450

seq1  CAAATACTATCACATCAAAGTTATACAAGGCAAACTTCCAGAAGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTATCACATCAAAGTTATACAAGGCAAACTTCCAGAAGGAAAGA  500

seq1  GACTAAAAGAAGGCTCAATATTCAGACACCCATTTGTTTCCATGTCCAT  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAGAAGGCTCAATATTCAGACACCCATTTGTTTCCATGTCCAT  549

seq1: chr3_77398592_77399426
seq2: B6Ng01-090D20.g_67_901

seq1  GAATTCATGCAGAAATTTTATTTCAGCCTTCCATGAAGTCTCCACACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGAAATTTTATTTCAGCCTTCCATGAAGTCTCCACACCTT  50

seq1  TTATTGTTAATTTTCCAATTAATTATAGATTTATTTATGCCTCTTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTAATTTTCCAATTAATTATAGATTTATTTATGCCTCTTGTAGA  100

seq1  CCAAGCTGTCAGTGGATATACAGTTGTTATCTCAATCTGTTCTCTAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTCAGTGGATATACAGTTGTTATCTCAATCTGTTCTCTAGCCC  150

seq1  TTTCATATAAATGGTGTTATACATTCATTTTTACTGAAAATAGTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAAATGGTGTTATACATTCATTTTTACTGAAAATAGTATTTTT  200

seq1  CATACAATGCATTTGATCACGGTATCTCCTACATCATGTCCTCCCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATGCATTTGATCACGGTATCTCCTACATCATGTCCTCCCAGATC  250

seq1  TTTTCTATCTTCCCATACAGCTAACTCCATAACGATCTCTATTTCATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCTTCCCATACAGCTAACTCCATAACGATCTCTATTTCATTCG  300

seq1  AAAGTACAGACACACACACAAAACATATACATAACACACACACACAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGACACACACACAAAACATATACATAACACACACACACAGACA  350

seq1  TACACACAGAGACACACACAGTCACATGCACATGAACACCACAAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGAGACACACACAGTCACATGCACATGAACACCACAAAAAATA  400

seq1  CAACATTGGAAGACATAATTTACAAACAATAGAGGAGTAAAGTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGGAAGACATAATTTACAAACAATAGAGGAGTAAAGTTTTAAAA  450

seq1  AAGGCCCAAATAAAGCAATATGAAGTAAAAATAAATAAATAAATAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCAAATAAAGCAATATGAAGTAAAAATAAATAAATAAATAAATAA  500

seq1  ATAAATAAATACAACCTTCAAAAATATCATTGACTTGGTTTTGTTGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATACAACCTTCAAAAATATCATTGACTTGGTTTTGTTGTCAG  550

seq1  TCTGTGATTAGGCATGGAACCTGCCCTTTTTTCACTAAGATTCCCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTAGGCATGGAACCTGCCCTTTTTTCACTAAGATTCCCTTGAA  600

seq1  GAAATCAAAATTTTCTTTTGTGAGTGGTTATCAATTGGAGGTAGTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAATTTTCTTTTGTGAGTGGTTATCAATTGGAGGTAGTTTCTT  650

seq1  GGTTAGGGATTGGAGGTCTTGTCTACTTATATATACCTCAGTACCAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGATTGGAGGTCTTGTCTACTTATATATACCTCAGTACCAACAA  700

seq1  CCCATCCTGGCTTGGTCCTGTGCAGGCTGTGTGCATACTCCCACAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGGCTTGGTCCTGTGCAGGCTGTGTGCATACTCCCACAGTCTT  750

seq1  TTTGAGATCATACATGTGTCATTCCTATGGGTTGGCAAAACATGCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATCATACATGTGTCATTCCTATGGGTTGGCAAAACATGCTTTTT  800

seq1  CCAGTAACACACATTCCCTCCTCCTCATATCTTTC  835
      |||||||||||||||||||||||||||||||||||
seq2  CCAGTAACACACATTCCCTCCTCCTCATATCTTTC  835