BAC Information

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BAC

Clone NameB6Ng01-090E16
Chromosome3 (Build37)
Map Location 24,040,673 - 24,041,755
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E16.bB6Ng01-090E16.g
ACCDH902636DH902637
length1,2401,068
definitionDH902636|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E16, 5' end.DH902637|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataatgaaaagctgagaagcacctaaaaaatgt
tcaatgtcttcaatcatcagggaaatgcagatcaaaacaactctgagatt
caacctcataccagtcagaatgactaagatgaaaactcaggtgacagcag
atgctggtgaggatgtggagaaagaggaacactcctctattgctggtagg
attgcaagctggtacaaccactctggaaatcagtttggcaattcctcaga
aaattggacatagtactactggaagatccagcaataccactcctgggcat
atacccagaagatgatctaacatggaataaggatacatgctccactatgt
cataacagccctatttataatagccagaaactggaaataacccagatgtc
cctctacaggggaatggaaacaaacaaacaaacaaaatgtgctacattta
cacaatggagtattactcaactattaaaaacaaagaatttatgaaacatt
tagacaaatggatggatatgggggatatcatcctgagtgaggtaacccaa
tcacaaaagaacacatgtgatatgtactcactaataagtggatattagct
cagaagctcagaatacccaagatacaatttgcaaaacacatgaaactcaa
gaagaaggaagacaatgtgtggatacttctttccttcttagaaaggagaa
caaaatccccatggaaggagttacagagacaaagttcagagcctagactg
aagaaatgaccatccagagactgtcccaccaggggattcagcccataaac
aaccaccaaacacagacactattgcagatgccatcaagtgtttgctcaca
ggatactaatatagctgtctcctcagagttcctgccagtgcctgacaata
cagaagtggatgctcatagccattcattggacagagcacagggtccctaa
tgaaggagctagaaaacgtactcaaggagatgaaaggggtttgcatccca
taggcggacacagtatgactaaccagtaccccagagctgcctgggactga
tcacagtcaagaatccatggtgagactattgctctagctgcatatgtagc
agagatggcttatcagtcatcatgtgagagaaacctgtttcctgtgatgt
ttctttgctcagtatagagaatgcagggtcagaagccagagaataggtgg
tgtgtgagatgactatgagatgaaggatgagtgcaactat
gaattccaaggttcaccatggattatatttttttcttttacagagaaaaa
cacatatacaaataacaacatttaagccaaataagaagcactatttgaga
attaacaggaacatgtttttaagttttgcaaataaatccagtgtaactaa
ctataccttcagaaagtattgataagcagctcttcagaaccgctatttac
tgcagacttttgaggttattgttggaaccacacaactcataggtttagta
gatatttttataggctcttggatatgatccataaatttcttaagtatctg
aggatttttggcttgtgcatgatgacaagaatgatatttttaaaataaaa
caaagcaaaacagatttgattagacaccaccagtcattaaccacaattat
tcctgacatgttctcatatggaagagacaatttctgaatccaatagtatc
aaactcatagttgaagttcttaatgattcaattcaatatttattgagcat
gtattacatgtgaggtataatgttttctgttatgaactaaatgaacaaaa
aaccattttccttagccttgagacacatattggcagaagaaatgttctat
gcaccacaaagcagattgggataaacactgtataggattttctaataaaa
tgagtttagaaaacaaagagatgattctctgcaatgacctgcaataacca
taaaattaaattattttctgtaaattatacttactaaggcaagatataat
actgaatcattttagaactgttaccacaactgggtatatattaaccgttt
tatgtttaccatatattatttaaaaattaaattacaagatctcttatttc
ccaaattctagctattacaactttatttctaagatatagaaaaacatttt
ctccatcatgggttggctttatatgctcaaggttttttgtttgtttgttt
gtttgtttgaggagcagaataagctatgatgtccactgtaattattccaa
tgttttagactaaatatgtttcaaatcttttttccatagctgaggtaata
ataaaaatcctactaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24040673_24041755
seq2: B6Ng01-090E16.g_71_1138

seq1  GAATTCCAAGGTTCACCATGGATTATATTTTTTTCTTTTACAGAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTTCACCATGGATTATATTTTTTTCTTTTACAGAGAAAAA  50

seq1  CACATATACAAATAACAACATTTAAGCCAAATAAGAAGCACTATTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACAAATAACAACATTTAAGCCAAATAAGAAGCACTATTTGAGA  100

seq1  ATTAACAGGAACATGTTTTTAAGTTTTGCAAATAAATCCAGTGTAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGGAACATGTTTTTAAGTTTTGCAAATAAATCCAGTGTAACTAA  150

seq1  CTATACCTTCAGAAAGTATTGATAAGCAGCTCTTCAGAACCGCTATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTTCAGAAAGTATTGATAAGCAGCTCTTCAGAACCGCTATTTAC  200

seq1  TGCAGACTTTTGAGGTTATTGTTGGAACCACACAACTCATAGGTTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTTTGAGGTTATTGTTGGAACCACACAACTCATAGGTTTAGTA  250

seq1  GATATTTTTATAGGCTCTTGGATATGATCCATAAATTTCTTAAGTATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTATAGGCTCTTGGATATGATCCATAAATTTCTTAAGTATCTG  300

seq1  AGGATTTTTGGCTTGTGCATGATGACAAGAATGATATTTTTAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTGGCTTGTGCATGATGACAAGAATGATATTTTTAAAATAAAA  350

seq1  CAAAGCAAAACAGATTTGATTAGACACCACCAGTCATTAACCACAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAACAGATTTGATTAGACACCACCAGTCATTAACCACAATTAT  400

seq1  TCCTGACATGTTCTCATATGGAAGAGACAATTTCTGAATCCAATAGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATGTTCTCATATGGAAGAGACAATTTCTGAATCCAATAGTATC  450

seq1  AAACTCATAGTTGAAGTTCTTAATGATTCAATTCAATATTTATTGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATAGTTGAAGTTCTTAATGATTCAATTCAATATTTATTGAGCAT  500

seq1  GTATTACATGTGAGGTATAATGTTTTCTGTTATGAACTAAATGAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACATGTGAGGTATAATGTTTTCTGTTATGAACTAAATGAACAAAA  550

seq1  AACCATTTTCCTTAGCCTTGAGACACATATTGGCAGAAGAAATGTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTCCTTAGCCTTGAGACACATATTGGCAGAAGAAATGTTCTAT  600

seq1  GCACCACAAAGCAGATTGGGATAAACACTGTATAGGATTTTCTAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAAAGCAGATTGGGATAAACACTGTATAGGATTTTCTAATAAAA  650

seq1  TGAGTTTAGAAAACAAAGAGATGATTCTCTGCAATGACCTGCAATAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAGAAAACAAAGAGATGATTCTCTGCAATGACCTGCAATAACCA  700

seq1  TAAAATTAAATTATTTTCTGTAAATTATACTTACTAAGGCAAGATATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAATTATTTTCTGTAAATTATACTTACTAAGGCAAGATATAAT  750

seq1  ACTGAATCATTTTAGAACTGTTACCACAACTGGGTATATATTAACCGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCATTTTAGAACTGTTACCACAACTGGGTATATATTAACCGTTT  800

seq1  TATGTTTACCATATACTAATTTAAAAATTAAATTACAAGATCTCTTTATT  850
      ||||||||||||||| | |||||||||||||||||||||||||| |||||
seq2  TATGTTTACCATATA-TTATTTAAAAATTAAATTACAAGATCTC-TTATT  848

seq1  TCCCAAAATTCTAGCTAATTACAACTTTATTTCTAAGGATATAGAAAAAC  900
      |||| ||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TCCC-AAATTCTAGCT-ATTACAACTTTATTTCTAA-GATATAGAAAAAC  895

seq1  ATTTTCTCCATCATTGGTTTGGCTTTATTATGCTCAAGGTTTTTTGTTTG  950
      ||||||||||||| ||| ||||||||| ||||||||||||||||||||||
seq2  ATTTTCTCCATCA-TGGGTTGGCTTTA-TATGCTCAAGGTTTTTTGTTTG  943

seq1  TTTGTTTGTTTGTTTGAGGAGCAGAATAAGCTAATGATGTCCACTGTAAT  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGTTTGTTTGTTTGAGGAGCAGAATAAGCT-ATGATGTCCACTGTAAT  992

seq1  TATTCCAATGTATTTAGACTAAATAATGTTTTCAAATACTTTTTATCATA  1050
      ||||||||||| |||||||||||| ||| |||||||| ||||||  ||| 
seq2  TATTCCAATGT-TTTAGACTAAAT-ATG-TTTCAAAT-CTTTTTTCCAT-  1037

seq1  AGCTTGAGTAAATAATAAAAAATCCTACTAATA  1083
      ||| ||||  |||||| ||||||||||||||||
seq2  AGC-TGAGGTAATAAT-AAAAATCCTACTAATA  1068