BAC Information

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BAC

Clone NameB6Ng01-090G05
Chromosome3 (Build37)
Map Location 91,555,567 - 91,556,655
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G05.bB6Ng01-090G05.g
ACCDH902700DH902701
length1,1841,090
definitionDH902700|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G05, 5' end.DH902701|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagcccccttttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccgtgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggattgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctccctggtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaacagaggttcttt
tatttttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatttt
ctgagatcttcttaatttctttcttcatagacttgaagtttttatcaaac
agattttttactcctttagttagagtccccgccgagatattttatattat
ttggtgactattgagaagggtgttgtttcccttaatttctttcctagcct
gttaattcttgtgtagagaaaggccatggactgttgagtaaattttaatc
cagctacttcaccggagctggtttacaggttagaagttctctggtggact
ttagggcactataactatcaaatcacctcaaagtgaatttgactccctcc
ttccatgaaccctggaactcctttggtgtgaatg
gaattcaatgggccctaggtttccatagtaacgtaagatacctctccctc
aactctggtgaacaaaaacctgtccttttctgctatgctatttctcagca
tcttgtgttgagttaaacaagctgatggaacaacagaagcctgtggtctg
agtatttctcttgcttggctggagatacctgtattctgtctaaaatctga
caacccatacgatcttggtcaaataatctttcacagaactagtgcttaaa
acaaaattaaaaaaaaaacgactagtaattccctgggacataaaatggct
ctattcatttccctctggttcatatagatttaacaaagtccaagcctttt
cttggtcatcaataagtaagtgcctagtacctaaattttacctaatctgt
ttttgctaaaatcatatgttgatccccacaaattataggacttcaaccat
tgaataggaaagtgttcagaacggtaaatcttactaaacaccaagccatt
tttgacctattaaaaaatagtttttcccctgacatcactggtgtcaatta
tgtttacctacctcattttgcctacatgtagtacctggccttcacccaaa
ggtattttttcatttctgctgcttctcattttctaatatgctaaaaaaag
cttttaaatggttaaggacattttagaatatgtctggtgcaggtgtgttc
ttaactcctatagtaaatacacgggtagtcttagaacctgcaaaaaaaga
atcatcaaatcaagacagtatgtttagcaacattatatttctcaagttcc
tctacaatgagccaggattgcaacaacacactataccttccttgtgagag
aaatagaaacacagtcacagatagactaattccactatcctggggataaa
tgaaacttattccaaattcttagaatatatggggtgttattagctataag
tgttcttttgaagcaatgggagcactttttataactcagatgttgttctg
agttaaagccattgtgcaattaagtaatgggggaagttcatgttaaataa
ctgaaattcagtagttctctaaatgcaattccacttacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91555567_91556655
seq2: B6Ng01-090G05.g_68_1157

seq1  GAATTCAATGGGCCCTAGGTTTCCATAGTAACGTAAGATACCTCTCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGCCCTAGGTTTCCATAGTAACGTAAGATACCTCTCCCTC  50

seq1  AACTCTGGTGAACAAAAACCTGTCCTTTTCTGCTATGCTATTTCTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTGAACAAAAACCTGTCCTTTTCTGCTATGCTATTTCTCAGCA  100

seq1  TCTTGTGTTGAGTTAAACAAGCTGATGGAACAACAGAAGCCTGTGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTTGAGTTAAACAAGCTGATGGAACAACAGAAGCCTGTGGTCTG  150

seq1  AGTATTTCTCTTGCTTGGCTGGAGATACCTGTATTCTGTCTAAAATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCTCTTGCTTGGCTGGAGATACCTGTATTCTGTCTAAAATCTGA  200

seq1  CAACCCATACGATCTTGGTCAAATAATCTTTCACAGAACTAGTGCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATACGATCTTGGTCAAATAATCTTTCACAGAACTAGTGCTTAAA  250

seq1  ACAAAATTAAAAAAAAAACGACTAGTAATTCCCTGGGACATAAAATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAAAAAAAAAACGACTAGTAATTCCCTGGGACATAAAATGGCT  300

seq1  CTATTCATTTCCCTCTGGTTCATATAGATTTAACAAAGTCCAAGCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTTCCCTCTGGTTCATATAGATTTAACAAAGTCCAAGCCTTTT  350

seq1  CTTGGTCATCAATAAGTAAGTGCCTAGTACCTAAATTTTACCTAATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATCAATAAGTAAGTGCCTAGTACCTAAATTTTACCTAATCTGT  400

seq1  TTTTGCTAAAATCATATGTTGATCCCCACAAATTATAGGACTTCAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAAAATCATATGTTGATCCCCACAAATTATAGGACTTCAACCAT  450

seq1  TGAATAGGAAAGTGTTCAGAACGGTAAATCTTACTAAACACCAAGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGAAAGTGTTCAGAACGGTAAATCTTACTAAACACCAAGCCATT  500

seq1  TTTGACCTATTAAAAAATAGTTTTTCCCCTGACATCACTGGTGTCAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTATTAAAAAATAGTTTTTCCCCTGACATCACTGGTGTCAATTA  550

seq1  TGTTTACCTACCTCATTTTGCCTACATGTAGTACCTGGCCTTCACCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTACCTCATTTTGCCTACATGTAGTACCTGGCCTTCACCCAAA  600

seq1  GGTATTTTTTCATTTCTGCTGCTTCTCATTTTCTAATATGCTAAAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTTCATTTCTGCTGCTTCTCATTTTCTAATATGCTAAAAAAAG  650

seq1  CTTTTAAATGGTTAAGGACATTTTAGAATATGTCTGGTGCAGGTGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATGGTTAAGGACATTTTAGAATATGTCTGGTGCAGGTGTGTTC  700

seq1  TTAACTCCTATAGTAAATACACGGGTAGTCTTAGAACCTGCAAAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTATAGTAAATACACGGGTAGTCTTAGAACCTGCAAAAAAAGA  750

seq1  ATCATCAAATCAAGACAGTATGTTTAGCAACATTATATTTCTCAAGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAATCAAGACAGTATGTTTAGCAACATTATATTTCTCAAGTTCC  800

seq1  TCTACAATGAGCCAGGATTGCAACAACACACTATACCTTCCCTGTGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTACAATGAGCCAGGATTGCAACAACACACTATACCTTCCTTGTGAGAG  850

seq1  AAATAGAAACACAGTCACAGATAGACTAATCCCACTTATCCTGTGATTAA  900
      |||||||||||||||||||||||||||||| |||| ||||||| |  |||
seq2  AAATAGAAACACAGTCACAGATAGACTAATTCCAC-TATCCTGGGGATAA  899

seq1  ATGAAACTTATTCCAAATTCTTAGAATATTATGGGTGTTA-TAGCTATAA  949
      |||||||||||||||||||||||||||||   |||||||| |||||||||
seq2  ATGAAACTTATTCCAAATTCTTAGAATATATGGGGTGTTATTAGCTATAA  949

seq1  GTGTTC-TTTGAAGCAAT-GGAGCAC-TTTTAT-ACTCAGATGTTGTTCT  995
      |||||| ||||||||||| ||||||| |||||| ||||||||||||||||
seq2  GTGTTCTTTTGAAGCAATGGGAGCACTTTTTATAACTCAGATGTTGTTCT  999

seq1  GAGTTAAAGCCATGTTGCATATAAGTAAT-GGGGAAGTTCATGTTAAATA  1044
      |||||||||||||  ||||  |||||||| ||||||||||||||||||||
seq2  GAGTTAAAGCCATTGTGCAATTAAGTAATGGGGGAAGTTCATGTTAAATA  1049

seq1  ACTGAAATATCAAGTAGTTCTCTAAATGCCATTTCCCACTTACAA  1089
      |||||||| || ||||||||||||||||| |||  ||||||||||
seq2  ACTGAAAT-TC-AGTAGTTCTCTAAATGCAATT--CCACTTACAA  1090