BAC Information

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BAC

Clone NameB6Ng01-090G08
Chromosome3 (Build37)
Map Location 92,735,773 - 92,881,326
singlet/doubletdoublet
Overlap geneLce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a
Downstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G08.bB6Ng01-090G08.g
ACCDH902706DH902707
length1,250737
definitionDH902706|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G08, 5' end.DH902707|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,880,064 - 92,881,326)(92,735,773 - 92,736,509)
sequence
gaattcactgcctcctgagaccctgctccagagtcatccagatcaagagc
tagatggactaaaactgactcctctgaaggcaaacacctctggaatctgt
tgcttgtaattttaaaaatccaggctagcttgggctaggctctggaatca
gtagccaccctttcttccttgcccaatgaggaaaatggcctctggccctg
gttccctctgctggcttgctaagccagccaagaccatccttccagagaat
gcctggagctactgctcttgttctacaggtcatccaccctaccaaccccc
aacccggggtgagtctgtataccacatatgacccctccatggtttcaccc
tctctcttgcccacataaatatttgcaaatgaaaaacaccacatagcctt
aatatttaataccagccagatttgtattggtaaatcgccaaccccaatat
gcccatgcaaagaacacacaactcaattatactatttaaaagctgcatac
ctaaattgggcagatataccactacactaccctattccccagctatgaga
tcccttgctacttgtgactcctccaggtcacatggttctgctctttcatc
ttctcttcctccatcttcctctttctctgtccctccttctcatcttcctt
tttcctccttcctctctctttcctaaaacttgtagccctgcctttccctt
ccattgcccagtttttatgtgactgcttaaaatgggggagcaggttcaca
tggagtcacctgagtatgagaccccgctcctcatcggggtaggattagca
tcaaaatacaaataacaccaagacaatccacaaaagaaatcaataaacag
aatcaatttttgtattcatatcatattttgtaagatatggttttgtctaa
tgagctggtttgggcattgccttagggtttattactgtgaacagacatct
tgactaaggcaactcttataaggacatttaattggagctggcttataggt
tcagagttcagacattatcatcaaggttggagcatggcaacctccagtag
gcatgtagagagggagctgagaagtttgcctctttcattttgaagtcttt
ctgaagactggcatcaaggagagctaggatagagggcctttttttggtat
tttttcccgatgccaagagcagatgtttatttctggcaactccaggaaac
cttactagttctaggccaagtgcagaggaccctgaatggctactacaagc

gaattccatacacatcagctttcctcatcttcctacagtttttgcctcag
aaaggaaacaacccattagcatcagttaatgttagaatgaaaggaaccaa
acctaatgtttaaattattacataagttttaatagccataaataatgaga
catctttactatgatgatttttattcacaatataattaattataagatat
aagtaactgtgtatatcacccatcacctgctttttatgggctaattctaa
gccataaatatttctttctgtaagaaaacacacatatatgatgtgatatt
ttaacaatcaaaatatttaaattgtatgtgaattactaaagttggtaact
atagcccaaaatacattttactcaagtataatatcacatcatgtaagatt
tcagcttacatgaatttacaaatatcaagcagaggcatcttcatatgtgt
aatgcaattattattctatttaaatttgataacctgcacctgtttttctg
tgttcagaaagtccatttcattgttagaagccatgaggttactcaaggat
tgtcaccatacaaggcctaacactcccccatcacttccaggtgccccact
gatagagctcaggggacagcagcaaattacaactgaaggtcatgttcctt
gggcagcatgaaatttgtggaaaacaatattttatgatttaagctttgga
ttttgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92880064_92881326
seq2: B6Ng01-090G08.b_46_1295 (reverse)

seq1  GCTTGTAGTAGCCATTCAGAGTCACCTTCTTGCCACTT-GCCTCGAGGGA  49
      ||||||||||||||||||| |||     ||   ||||| |||| ||   |
seq2  GCTTGTAGTAGCCATTCAGGGTC-----CTCTGCACTTGGCCTAGA---A  42

seq1  CTGATTGAGGGTGTTCCCGATGTGCCAGAAAATAAACATCTTGCT-TTTG  98
      ||  |  | ||| | |  ||  |||||| ||||||||||| |||| || |
seq2  CTAGT--AAGGTTTCCTGGAGTTGCCAG-AAATAAACATC-TGCTCTTGG  88

seq1  CATCAGAAAAAAATAACAAAAAAAAAAGACCCTC-ATCCTAGCTC-CCTG  146
      |||| | |||||||| |   |||||||| ||||| |||||||||| ||| 
seq2  CATCGGGAAAAAATACC---AAAAAAAGGCCCTCTATCCTAGCTCTCCTT  135

seq1  GATGCCAGTCTTCTAGAAGACTTC-AGATG-AAGATGCAAAACTCTCAGC  194
      |||||||||||||   |||||||| | ||| |||| |||||  |||||||
seq2  GATGCCAGTCTTCAGAAAGACTTCAAAATGAAAGAGGCAAACTTCTCAGC  185

seq1  TCCTCTTCTACCATGCCTACTTGGAGGTTGCCATGCTCCAACCTTGATGA  244
      |||   |||| ||||||||| |||||||||||||||||||||||||||||
seq2  TCCCTCTCTA-CATGCCTAC-TGGAGGTTGCCATGCTCCAACCTTGATGA  233

seq1  TAATTGTCTGAACTTCTGAACCTATAAGCCAGCTCCAATTAAATGTCCTT  294
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAA-TGTCTGAAC-TCTGAACCTATAAGCCAGCTCCAATTAAATGTCCTT  281

seq1  ATAAGAGTTGCCTTAGTCAAGATGTCTGTTCACAGTAATAAAACCCTAAG  344
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAGAGTTGCCTTAGTCAAGATGTCTGTTCACAGTAAT-AAACCCTAAG  330

seq1  GCAATGGCCAAACCAGCTCATTAGACAAAACCATATCTTACAAAATATGA  394
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCCAAACCAGCTCATTAGACAAAACCATATCTTACAAAATATGA  380

seq1  TATGAATACAAAAATTGATTCTGTTTATTGATTTCTTTTGTGGATTGTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACAAAAATTGATTCTGTTTATTGATTTCTTTTGTGGATTGTCT  430

seq1  TGGTGTTATTTGTATTTTGATGCTAATCCTACCCCGATGAGGAGCGGGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTATTTGTATTTTGATGCTAATCCTACCCCGATGAGGAGCGGGGT  480

seq1  CTCATACTCAGGTGACTCCATGTGAACCTGCT-CCCCATTTTAAGCAGTC  543
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATACTCAGGTGACTCCATGTGAACCTGCTCCCCCATTTTAAGCAGTC  530

seq1  ACATAAAAACTGGGCAATGGAAGGGAAAGGCAGGGCTACAAGTTTTAGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAACTGGGCAATGGAAGGGAAAGGCAGGGCTACAAGTTTTAGGA  580

seq1  AAGAGAGAGGAAGGAGGAAAAAGGAAGATGAGAAGGAGGGACAGAGAAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGGAAGGAGGAAAAAGGAAGATGAGAAGGAGGGACAGAGAAAG  630

seq1  AGGAAGATGGAGGAAGAGAAGATGAAAGAGCAGAACCATGTGACCTGGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGGAGGAAGAGAAGATGAAAGAGCAGAACCATGTGACCTGGAG  680

seq1  GAGTCACAAGTAGCAAGGGATCTCATAGCTGGGGAATAGGGTAGTGTAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAAGTAGCAAGGGATCTCATAGCTGGGGAATAGGGTAGTGTAGT  730

seq1  GGTATATCTGCCCAATTTAGGTATGCAGCTTTTAAATAGTATAATTGAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATCTGCCCAATTTAGGTATGCAGCTTTTAAATAGTATAATTGAGT  780

seq1  TGTGTGTTCTTTGCATGGGCATATTGGGGTTGGCGATTTACCAATACAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCTTTGCATGGGCATATTGGGGTTGGCGATTTACCAATACAAA  830

seq1  TCTGGCTGGTATTAAATATTAAGGCTATGTGGTGTTTTTCATTTGCAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGTATTAAATATTAAGGCTATGTGGTGTTTTTCATTTGCAAAT  880

seq1  ATTTATGTGGGCAAGAGAGAGGGTGAAACCATGGAGGGGTCATATGTGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGGGCAAGAGAGAGGGTGAAACCATGGAGGGGTCATATGTGGT  930

seq1  ATACAGACTCACCCCGGGTTGGGGGTTGGTAGGGTGGATGACCTGTAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACTCACCCCGGGTTGGGGGTTGGTAGGGTGGATGACCTGTAGAA  980

seq1  CAAGAGCAGTAGCTCCAGGCATTCTCTGGAAGGATGGTCTTGGCTGGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGTAGCTCCAGGCATTCTCTGGAAGGATGGTCTTGGCTGGCTT  1030

seq1  AGCAAGCCAGCAGAGGGAACCAGGGCCAGAGGCCATTTTCCTCATTGGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGCAGAGGGAACCAGGGCCAGAGGCCATTTTCCTCATTGGGC  1080

seq1  AAGGAAGAAAGGGTGGCTACTGATTCCAGAGCCTAGCCCAAGCTAGCCTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGGGTGGCTACTGATTCCAGAGCCTAGCCCAAGCTAGCCTG  1130

seq1  GATTTTTAAAATTACAAGCAACAGATTCCAGAGGTGTTTGCCTTCAGAGG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAAATTACAAGCAACAGATTCCAGAGGTGTTTGCCTTCAGAGG  1180

seq1  AGTCAGTTTTAGTCCATCTAGCTCTTGATCTGGATGACTCTGGAGCAGGG  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTTAGTCCATCTAGCTCTTGATCTGGATGACTCTGGAGCAGGG  1230

seq1  TCTCAGGAGGCAGTGAATTC  1263
      ||||||||||||||||||||
seq2  TCTCAGGAGGCAGTGAATTC  1250

seq1: chr3_92735773_92736509
seq2: B6Ng01-090G08.g_70_806

seq1  GAATTCCATACACATCAGCTTTCCTCATCTTCCTACAGTTTTTGCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACACATCAGCTTTCCTCATCTTCCTACAGTTTTTGCCTCAG  50

seq1  AAAGGAAACAACCCATTAGCATCAGTTAATGTTAGAATGAAAGGAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACAACCCATTAGCATCAGTTAATGTTAGAATGAAAGGAACCAA  100

seq1  ACCTAATGTTTAAATTATTACATAAGTTTTAATAGCCATAAATAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATGTTTAAATTATTACATAAGTTTTAATAGCCATAAATAATGAGA  150

seq1  CATCTTTACTATGATGATTTTTATTCACAATATAATTAATTATAAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACTATGATGATTTTTATTCACAATATAATTAATTATAAGATAT  200

seq1  AAGTAACTGTGTATATCACCCATCACCTGCTTTTTATGGGCTAATTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTGTGTATATCACCCATCACCTGCTTTTTATGGGCTAATTCTAA  250

seq1  GCCATAAATATTTCTTTCTGTAAGAAAACACACATATATGATGTGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAATATTTCTTTCTGTAAGAAAACACACATATATGATGTGATATT  300

seq1  TTAACAATCAAAATATTTAAATTGTATGTGAATTACTAAAGTTGGTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATCAAAATATTTAAATTGTATGTGAATTACTAAAGTTGGTAACT  350

seq1  ATAGCCCAAAATACATTTTACTCAAGTATAATATCACATCATGTAAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAAAATACATTTTACTCAAGTATAATATCACATCATGTAAGATT  400

seq1  TCAGCTTACATGAATTTACAAATATCAAGCAGAGGCATCTTCATATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTACATGAATTTACAAATATCAAGCAGAGGCATCTTCATATGTGT  450

seq1  AATGCAATTATTATTCTATTTAAATTTGATAACCTGCACCTGTTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATTATTATTCTATTTAAATTTGATAACCTGCACCTGTTTTTCTG  500

seq1  TGTTCAGAAAGTCCATTTCATTGTTAGAAGCCATGAGGTTACTCAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAAGTCCATTTCATTGTTAGAAGCCATGAGGTTACTCAAGGAT  550

seq1  TGTCACCATACAAGGCCTAACACTCCCCCATCACTTCCAGGTGCCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATACAAGGCCTAACACTCCCCCATCACTTCCAGGTGCCCCACT  600

seq1  GATAGAGCTCAGGGGACAGCAGCAAATTACAACTGAAGGTCATGTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGCTCAGGGGACAGCAGCAAATTACAACTGAAGGTCATGTTCCTT  650

seq1  GGGCAGCATGAAATTTGTGGAAAACAATATTTTATGATTTAAGCTTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCATGAAATTTGTGGAAAACAATATTTTATGATTTAAGCTTTGGA  700

seq1  TTTTGTGGGTTTGTGTGTGTGTGTGTGTGTGTGTGTG  737
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGTTTGTGTGTGTGTGTGTGTGTGTGTGTG  737