BAC Information

Click to search

BAC

Clone NameB6Ng01-090K18
Chromosome3 (Build37)
Map Location 7,070,628 - 7,276,194
singlet/doubletdoublet
Overlap geneEG667801
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090K18.bB6Ng01-090K18.g
ACCDH902909DH902910
length924834
definitionDH902909|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K18, 5' end.DH902910|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,070,628 - 7,071,539)(7,275,362 - 7,276,194)
sequence
gaattcatcttctcaacaaaagcaaataacatgaaatgtttcacattgaa
tcagacagctaattgtcatttaaaaacatattaatcttctattttattgt
gtgcaaagctttttttttcctttttctattttttctctcttactctcatg
gtacaatgcaataaatctaaccatgatgaatagatcttccaaaatgaaac
tggcctagaccaaggggaacacatgcatccaaatgtttctaatatacata
caaacaatgtgcttacaaattaatgcagtattcagtgttgtagcatgtat
ggcaggagagacaccccaagagccaaaaggtttcagaaagtaaggaggtt
gctaatgagaatgtgttaaagggacagaaacctatttgaggtagtttcca
acacaaaagccaatgattaaaaactagaattaaatattcagcattaaaat
ataaaacaagctgggcgtggtagcacatgcctttaatcccagcacttggg
aggcagaggaaggtgaatttctttctttttttttaattaggtattttcct
catttacatttccaatgctatcccaaaagtcccccataccctcaccccca
ctcccctacccacccactcccacttcttagccctggttttcccttgtact
ggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggc
cgcctaggccatcttttgatacatatgcagctagagtcaagagctccagg
gtactggttagttcataatgttgttccacctatagggttgcagatccctt
tagctccttgggtattttctctaactcatccattgggggcccttgtgatc
catccaatagttgacagtgagcatccactttctgtgtttgctaggccccg
gcatagtctcactagagacagcta

gaattcagtcagttacaaaataaaacaaggacaagaacatgggaaagaca
cctactcagaggaagtgagattgacagggaggggggggatcactgataaa
ggtgaaggtgtgggtgatctgcatgcattgcacactgcataaaattatca
aaggataattcatggtaaacttcttagaacaactaacatgttatattatt
tttgtagaatgaaaatactttatatcaactattggtgttccaaacaaata
tgtgatgcttataccatattccattaatgcactgaacctttttgtatgag
aatgataagataaggttgtatatatctacaacagttatactgaaacattc
atatcttctgtatctgataattttatatccacctattccaatcatgtggt
aagacaaatctttgtaagagtttttacatgttgaagtataaaaaacacag
ggactagagagatggctcagcggttaagagcactggctgctcttctgaag
gtcctgagttcaaatcctagcaaccacatggtggctcacaaccacctgta
acgagatctggcacccgcttttggagtgtctgaagacagctacagtgtac
ttacatataaaaaaacaaataaataaaatctttaaaaaattataaaacac
agagccgtagcctttgtaataaatttttttctttctcttatagataaata
atttacagattgtttgcactaatttattagttctagatgccattttttga
gttttaaaatctttttagatgcatcttagaaataggtggcatatgatgat
ttaacggttatttttcttttaaagggaccaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7070628_7071539
seq2: B6Ng01-090K18.b_48_961

seq1  GAATTCATCTTCTCAACAAAAGCAAATAACATGAAATGTTTCACATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCTCAACAAAAGCAAATAACATGAAATGTTTCACATTGAA  50

seq1  TCAGACAGCTAATTGTCATTTAAAAACATATTAATCTTCTATTTTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCTAATTGTCATTTAAAAACATATTAATCTTCTATTTTATTGT  100

seq1  GTGCAAAGCTTTTTTTTTCCTTTTTCTATTTTTTCTCTCTTACTCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGCTTTTTTTTTCCTTTTTCTATTTTTTCTCTCTTACTCTCATG  150

seq1  GTACAATGCAATAAATCTAACCATGATGAATAGATCTTCCAAAATGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGCAATAAATCTAACCATGATGAATAGATCTTCCAAAATGAAAC  200

seq1  TGGCCTAGACCAAGGGGAACACATGCATCCAAATGTTTCTAATATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGACCAAGGGGAACACATGCATCCAAATGTTTCTAATATACATA  250

seq1  CAAACAATGTGCTTACAAATTAATGCAGTATTCAGTGTTGTAGCATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATGTGCTTACAAATTAATGCAGTATTCAGTGTTGTAGCATGTAT  300

seq1  GGCAGGAGAGACACCCCAAGAGCCAAAAGGTTTCAGAAAGTAAGGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGAGACACCCCAAGAGCCAAAAGGTTTCAGAAAGTAAGGAGGTT  350

seq1  GCTAATGAGAATGTGTTAAAGGGACAGAAACCTATTTGAGGTAGTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAGAATGTGTTAAAGGGACAGAAACCTATTTGAGGTAGTTTCCA  400

seq1  ACACAAAAGCCAATGATTAAAAACTAGAATTAAATATTCAGCATTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGCCAATGATTAAAAACTAGAATTAAATATTCAGCATTAAAAT  450

seq1  ATAAAACAAGCTGGGCGTGGTAGCACATGCCTTTAATCCCAGCACTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAGCTGGGCGTGGTAGCACATGCCTTTAATCCCAGCACTTGGG  500

seq1  AGGCAGAGGAAGGTGAATTTCTTTCTTTTTTTTTAATTAGGTATTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGAAGGTGAATTTCTTTCTTTTTTTTTAATTAGGTATTTTCCT  550

seq1  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCACCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCACCCCCA  600

seq1  CTCCCCTACCCACCCACTCCCACTTCTTAGCCCTGGTTTTCCCTTGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACCCACTCCCACTTCTTAGCCCTGGTTTTCCCTTGTACT  650

seq1  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  700

seq1  CGCCTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGG  750

seq1  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  800

seq1  TAGCTCCTTGGGTATTTTCTCTAACTCATCCATTGGGGGCCC-TGTGATC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGCTCCTTGGGTATTTTCTCTAACTCATCCATTGGGGGCCCTTGTGATC  850

seq1  CATCCAATAGTTGACAGTGAGCATCCAC-TTCTGTGTTTGCTAGGCCCCG  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCCAATAGTTGACAGTGAGCATCCACTTTCTGTGTTTGCTAGGCCCCG  900

seq1  GCATAGTCTCACTA  912
      ||||||||||||||
seq2  GCATAGTCTCACTA  914


seq1: chr3_7275362_7276194
seq2: B6Ng01-090K18.g_69_902 (reverse)

seq1  AGCTTGGTCCATTTAAAAAGAAAAATAACAGTTTAATCATCATATGCCAC  50
      |||||||||| ||| |||||||||||||| ||| ||||||||||||||||
seq2  AGCTTGGTCCCTTT-AAAAGAAAAATAACCGTTAAATCATCATATGCCAC  49

seq1  CTA-TTCTAAGATGCATCTTATAAAGATTTTAAAACTCAAAAAATGGCAT  99
      ||| |||||||||||||| || ||||||||||||||||||||||||||||
seq2  CTATTTCTAAGATGCATC-TAAAAAGATTTTAAAACTCAAAAAATGGCAT  98

seq1  CTTAGAACTAATAAATTAGTGCAAACAATCTGTAAATTATTTATCTATAA  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TAGAACTAATAAATTAGTGCAAACAATCTGTAAATTATTTATCTATAA  147

seq1  GAGAAAG-AAAAAATTTATTACAAAGGCTACGGCTCTGTGTTTTATAATT  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAAAAATTTATTACAAAGGCTACGGCTCTGTGTTTTATAATT  197

seq1  TTTTAAAGA-TTTATTTATTTG-TTTTTTATATGTAAGTACACTGTAGCT  246
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TTTTAAAGATTTTATTTATTTGTTTTTTTATATGTAAGTACACTGTAGCT  247

seq1  GTCTTCAGACACTCCAAAAGCGGGTGCCAGATCTCGTTACAGGTGGTTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGACACTCCAAAAGCGGGTGCCAGATCTCGTTACAGGTGGTTGT  297

seq1  GAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTTCAGAAGAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTTCAGAAGAGCA  347

seq1  GCCAGTGCTCTTAACCGCTGAGCCATCTCTCTAGTCCCTGTGTTTTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCTCTTAACCGCTGAGCCATCTCTCTAGTCCCTGTGTTTTTTAT  397

seq1  ACTTCAACATGTAAAAACTCTTACAAAGATTTGTCTTACCACATGATTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACATGTAAAAACTCTTACAAAGATTTGTCTTACCACATGATTGG  447

seq1  AATAGGTGGATATAAAATTATCAGATACAGAAGATATGAATGTTTCAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGGATATAAAATTATCAGATACAGAAGATATGAATGTTTCAGTA  497

seq1  TAACTGTTGTAGATATATACAACCTTATCTTATCATTCTCATACAAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTGTAGATATATACAACCTTATCTTATCATTCTCATACAAAAAG  547

seq1  GTTCAGTGCATTAATGGAATATGGTATAAGCATCACATATTTGTTTGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGCATTAATGGAATATGGTATAAGCATCACATATTTGTTTGGAA  597

seq1  CACCAATAGTTGATATAAAGTATTTTCATTCTACAAAAATAATATAACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAGTTGATATAAAGTATTTTCATTCTACAAAAATAATATAACAT  647

seq1  GTTAGTTGTTCTAAGAAGTTTACCATGAATTATCCTTTGATAATTTTATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGTTCTAAGAAGTTTACCATGAATTATCCTTTGATAATTTTATG  697

seq1  CAGTGTGCAATGCATGCAGATCACCCACACCTTCACCTTTATCAGTGATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCAATGCATGCAGATCACCCACACCTTCACCTTTATCAGTGATC  747

seq1  CCCCCCCTCCCTGTCAATCTCACTTCCTCTGAGTAGGTGTCTTTCCCATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTCCCTGTCAATCTCACTTCCTCTGAGTAGGTGTCTTTCCCATG  797

seq1  TTCTTGTCCTTGTTTTATTTTGTAACTGACTGAATTC  833
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCCTTGTTTTATTTTGTAACTGACTGAATTC  834


| Home | SequenceCutter | Blast | Download |