BAC Information

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BAC

Clone NameB6Ng01-091I14
Chromosome3 (Build37)2 (Build37)
Map Location 79,442,369 - 79,442,911171,221,826 - 171,222,644
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091I14.bB6Ng01-091I14.g
ACCDH903533DH903534
length1,089818
definitionDH903533|Mus musculus domesticus DNA, BAC clone: B6Ng01-091I14, 5' end.DH903534|Mus musculus domesticus DNA, BAC clone: B6Ng01-091I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,369 - 79,442,911)(171,221,826 - 171,222,644)
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatgtatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacgatgtcttttgccttgcagaagctttgcagtttca
tgagatcccatttgtcaatcctcgatcttaaagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagagaagaatgggtcaattccc
atatttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagttttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactt
ttatacttgagaagagcttttgctatcctaggtttttttgttattccaga
tgaatttgcagattgttctttctaattcgttgaaggaattgagttggaat
tttgatggggattgcattgaatctgtagattgcttttggcaagatagcca
tttttacaatgttgatcctgccaatccatgagcatggggagatctttcca
tcttctgagatcttcttttaatttcttttcttcagggacttgaagttttt
atcatacagatctttcacttccttaggtagagtcacgccaagatatttta
atattatttgtgactattgagaggtgttgtttctcttaattctttctcag
cctgtttatctttggtgataggaaaggccattgacttggttgagttaatt
ttgatccagctacttcactcaaagctggttattcagggt
gaattctttgtcactgttgcataaagtttcacatctacaaaatagtaact
gcaggaaagcatgccatttagaaatgtgcatgccttgtgtggtagtgggc
cgtacattcaggtgcatgtgcacatgtgtgtgctgtatgtggaggtcaga
ggttagtatcagcggtgctctttgatccatttctgctttatttttctgag
tctgggtgtctcaatgaatcgactgaacaggactgacagaaagctcagag
atcctcttgtccctgtttgcctggttctggttctgggtctataggcacac
cactacccgtggtttatttttacttgggtgttgggatccgaactcaagct
cccatgtttgtacagccaatacttactaacagtcatctctctaggcacag
acatgtgcttcttagtttaattgattactcgggaaattctgttggtaata
tctcaaatgtcatttgctggagtttcttcatcatgagcccctttgatgga
gaaaggagtccctacctcctatgtcagaaacatgcatagctgtgtgcctc
tactgctctcagatgctcctctgtgccttgtgagtttggcttaaacaatc
gaaggatcacattgagcagtgattgaaagctacaggacctttggggtcag
ttgaaaggaaattgtaggtccagtggggccagcagccatatgtggctctg
ctcagaatgctcatctgaatgctcatctctcttcttaagagaactgctct
gaggtcaatccatgctcatcaataaatgcctacacatggatgatatgggg
gtgatgtgatgtgtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442369_79442911
seq2: B6Ng01-091I14.b_590_1138 (reverse)

seq1  AACCTG-ATAAACAGCTTCG-GTGAAGTAGCTGGATATAAAATTAACTCA  48
      | |||| |||| |||||| | |||||||||||||||  ||||||||||||
seq2  ACCCTGAATAACCAGCTTTGAGTGAAGTAGCTGGAT-CAAAATTAACTCA  49

seq1  AACAAGTCAATGGCCTTTCTCTA-CACAAAGAATAAACAGGCTGAGAAAG  97
      | ||||||||||||||||| ||| ||| ||  ||||||||||||||||||
seq2  ACCAAGTCAATGGCCTTTC-CTATCACCAAAGATAAACAGGCTGAGAAAG  98

seq1  AAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATA-TAAAATA  146
      || | || |||||||||||  ||||||||| ||||||||||| |||||||
seq2  AATTAAGAGAAACAACACC--TCTCAATAGTCACAAATAATATTAAAATA  146

seq1  TCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACT  196
      ||| |||||||||||| | |||||||||||||||||||||||||||||||
seq2  TCTTGGCGTGACTCTACCTAAGGAAGTGAAAGATCTGTATGATAAAAACT  196

seq1  TCAAGTCCCTGAAG-AAAGAAATT-AAAGAAGATCTCAGAAGATGGAAAG  244
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TCAAGTCCCTGAAGAAAAGAAATTAAAAGAAGATCTCAGAAGATGGAAAG  246

seq1  ATCT-CCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTAT  293
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTCCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTAT  296

seq1  CTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAA  343
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAA  346

seq1  CTCAATT-CTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAA  392
      ||||||| |||||||||||||||| || |||| |||||||||||||||||
seq2  CTCAATTCCTTCAACGAATTAGAAAGAACAATCTGCAAATTCATCTGGAA  396

seq1  TAAC-AAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACC  441
      |||| |||||||| |||||||||||| ||||||||||| ||||||| |||
seq2  TAACAAAAAAACCTAGGATAGCAAAAGCTCTTCTCAAGTATAAAAGTACC  446

seq1  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  496

seq1  GAT-AAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGG  540
      ||| |||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GATAAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGG  546

seq1  AAT  543
      |||
seq2  AAT  549

seq1: chr2_171221826_171222644
seq2: B6Ng01-091I14.g_71_888

seq1  GAATTCTTTGTCACTGTTGCATAAAGTTTCACATCTACAAAATAGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCACTGTTGCATAAAGTTTCACATCTACAAAATAGTAACT  50

seq1  GCAGGAAAGCATGCCATTTAGAAATGTGCATGCCTTGTGTGGTAGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAGCATGCCATTTAGAAATGTGCATGCCTTGTGTGGTAGTGGGC  100

seq1  CGTACATTCAGGTGCATGTGCACATGTGTGTGCTGTATGTGGAGGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACATTCAGGTGCATGTGCACATGTGTGTGCTGTATGTGGAGGTCAGA  150

seq1  GGTTAGTATCAGCGGTGCTCTTTGATCCATTTCTGCTTTATTTTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTATCAGCGGTGCTCTTTGATCCATTTCTGCTTTATTTTTCTGAG  200

seq1  TCTGGGTGTCTCAATGAATCGACTGAACAGGACTGACAGAAAGCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGTCTCAATGAATCGACTGAACAGGACTGACAGAAAGCTCAGAG  250

seq1  ATCCTCTTGTCCCTGTTTGCCTGGTTCTGGTTCTGGGTCTATAGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTGTCCCTGTTTGCCTGGTTCTGGTTCTGGGTCTATAGGCACAC  300

seq1  CACTACCCGTGGTTTATTTTTACTTGGGTGTTGGGATCCGAACTCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCCGTGGTTTATTTTTACTTGGGTGTTGGGATCCGAACTCAAGCT  350

seq1  CCCATGTTTGTACAGCCAATACTTACTAACAGTCATCTCTCTAGGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTTGTACAGCCAATACTTACTAACAGTCATCTCTCTAGGCACAG  400

seq1  ACATGTGCTTCTTAGTTTAATTGATTACTCGGGAAATTCTGTTGGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCTTCTTAGTTTAATTGATTACTCGGGAAATTCTGTTGGTAATA  450

seq1  TCTCAAATGTCATTTGCTGGAGTTTCTTCATCATGAGCCCCTTTGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGTCATTTGCTGGAGTTTCTTCATCATGAGCCCCTTTGATGGA  500

seq1  GAAAGGAGTCCCTACCTCCTATGTCAGAAACATGCATAGCTGTGTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTCCCTACCTCCTATGTCAGAAACATGCATAGCTGTGTGCCTC  550

seq1  TACTGCTCTCAGATGCTCCTCTGTGCCTTGTGAGTTTGGCTTAAACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCTCAGATGCTCCTCTGTGCCTTGTGAGTTTGGCTTAAACAATC  600

seq1  GAAGGATCACATTGAGCAGTGATTGAAAGCTACAGGACCTTTGGGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCACATTGAGCAGTGATTGAAAGCTACAGGACCTTTGGGGTCAG  650

seq1  TTGAAAGGAAATTGTAGGTCCAGT-GGGCCAGCAGCCATATGTGGCTCTG  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAAAGGAAATTGTAGGTCCAGTGGGGCCAGCAGCCATATGTGGCTCTG  700

seq1  CTCAGAATGCTCATCTGAATGCTCATCTCTCTTCTTAAGAGAACTGCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATGCTCATCTGAATGCTCATCTCTCTTCTTAAGAGAACTGCTCT  750

seq1  GAGGTCAGTCCATGCTCAAGCAATAAATGCCTTACACATGGATGATCAGG  799
      ||||||| ||||||||| | ||||||||||| ||||||||||||||  ||
seq2  GAGGTCAATCCATGCTC-ATCAATAAATGCC-TACACATGGATGATATGG  798

seq1  GGGTGATGTGATGTGTACAG  819
      ||||||||||||||||||||
seq2  GGGTGATGTGATGTGTACAG  818