BAC Information

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BAC

Clone NameB6Ng01-091J14
Chromosome3 (Build37)
Map Location 107,296,462 - 107,433,562
singlet/doubletdoublet
Overlap geneSlc6a17, Ubl4b, Alx3, 6330569M22Rik
Upstream geneDennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4
Downstream geneAhcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091J14.bB6Ng01-091J14.g
ACCDH903578DH903579
length1,182645
definitionDH903578|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J14, 5' end.DH903579|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,432,368 - 107,433,562)(107,296,462 - 107,297,106)
sequence
gaattcctcaaattcaaatttgatgcttcagctagtaccagatactaaag
atagtgtctttaagcctaagaaatcagttccctccaaacattttgttgtt
gtcgcaggctcaaattctgataacttatgtcacaaaggaacaagcccaga
gttgagaggatgagtttagagtggcttttttgaaaaagatggacctttta
ggagccttttgttgtggaatgatgggtgatcagtggctacttctcagtga
tctcttaagtacgaaggagtatggaagttaagtttgtaagacctttaatg
accagacttgtccaggttttctgaagagaaccctgagaattgaactacac
cttcaaatttctctttttaaatgtttgagtggactggagagatggttcag
tggttaagagaacttgctgttctctcagaggatcccagcacccaagttgg
gccgctcacaactgcctattagcacactagctcctagggatccagtactg
tccttttgtcctccatgggcacatgtatacacacacagataaacacataa
tacatttaaaataagtgctttagggatggcgggatagctcagcaggtaaa
gtagttttaaattttcctgaaaagccacaaaatagtcagataaataccct
tttgtgcattttattttatttgttgtttgtttgcttctttgttttttgtt
ttgtttttgtttttgagacagggtttctctgtgtagctttagctgtccta
gaactctgctctgcagatggggctggcctcaaactcaacagagattcatc
tgcctcttgagtgctaggattaaaggtgtgcaccaccccttattcgtgtt
attatgtggtgctgagaatcagattcagggccttgtgcaaggtaggcaaa
cactatactgctgaggtatgtcctcagcctctattacatgtttttatttc
tcttcctacctttaatttcactggattcaacatctggaaggccatcacat
cgatctgtgtcctgtgtggagttgctgatgcttgcacacctttctgtgac
agctgagtcagtagttggggatcttgatcgtggctaagcacgaggaggct
cagatgtgtcaggtaaactttattagtcctcaactagcaagcagtccagc
aggcttcagtccacactctcggagcgtgagca
gaattcagaccattggttaaatatatattggttaaatgtatgagcatggg
aaagtggcttcagaatctgtttttccatctgtggagtgggacagtctgct
tcacacaaattaaaactcttcttagacgtatgctatcgaggtaacacagt
acttcataataactgaacaaaattcaatcctcgagacctctgtgagtcag
accaaaaggagatcagtaggtcattccttcaggagaagggggcaaaaatg
aggaccaggtttggaatgctttctccaaggtgactcaaaacccaacgaaa
acccaaatctgagcactagacagtttagactccttcctgggacagggctg
actggagatcacagctggggttccttagggatcccacacttgcctgctac
agtcccattcctgatgacaggacattcactccagggcagtgggtactgga
aagacttgaagaaatagaagacgctccacccaatgatcacattgtagtac
agcccaacgaagaggcagacctgaggatgagggccaaaataagataatca
tagaggctagaggtaagccatacctccccacacaccatccaaggcctagc
agctcaaaaacagccttgatggaggatgaggggggatgagatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107432368_107433562
seq2: B6Ng01-091J14.b_47_1228 (reverse)

seq1  TGCTCA-GCTTCCGGAGTGTTGTGACTGGAAGCATGCTCGACTGCCTTGG  49
      |||||| ||| |  ||||||   |||| ||||| |||| ||||||  | |
seq2  TGCTCACGCTCCGAGAGTGT--GGACT-GAAGCCTGCTGGACTGC--TTG  45

seq1  CTAGTTTTGAGGACTAATAAAGTTTACCTGGCACATACTGAGCCTCCTTG  99
      ||||  |||||||||||||||||||||||| ||||| ||||||||||| |
seq2  CTAG--TTGAGGACTAATAAAGTTTACCTGACACAT-CTGAGCCTCCTCG  92

seq1  TGCTCTAGGCACTGATC-AGATCCCCAAACTACTGACTTCAGCTGTCACC  148
      |||| ||| ||| |||| |||||||| |||||||||| |||||||||| |
seq2  TGCT-TAGCCAC-GATCAAGATCCCC-AACTACTGAC-TCAGCTGTCA-C  137

seq1  AGAAGGGTGTGC-AGCATCAGCACCTCCAACACAAGGACACAGATCGATG  197
      |||| ||||||| |||||||||| |||| |||| ||||||||||||||||
seq2  AGAAAGGTGTGCAAGCATCAGCAACTCC-ACAC-AGGACACAGATCGATG  185

seq1  TGATGGGCCTTCCAGATGTTGAATCCAGTGAAATTAAAGGTAGGAAGAGA  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAT-GGCCTTCCAGATGTTGAATCCAGTGAAATTAAAGGTAGGAAGAGA  234

seq1  AATAAAAACATGTAATAGAGGCTGAGGACATACCTCAGCAGTATAGTGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACATGTAATAGAGGCTGAGGACATACCTCAGCAGTATAGTGTT  284

seq1  TGCCTACCTTGCACAAGGCCCTGAATCTGATTCTCAGCACCACATAATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCTTGCACAAGGCCCTGAATCTGATTCTCAGCACCACATAATAA  334

seq1  CACGAATAAGGGGTGGTGCACACCTTTAATCCTAGCACTCAAGAGGCAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATAAGGGGTGGTGCACACCTTTAATCCTAGCACTCAAGAGGCAGA  384

seq1  TGAATCTCTGTTGAGTTTGAGGCCAGCCCCATCTGCAGAGCAGAGTTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCTGTTGAGTTTGAGGCCAGCCCCATCTGCAGAGCAGAGTTCTA  434

seq1  GGACAGCTAAAGCTACACAGAGAAACCCTGTCTCAAAAACAAAAACAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTAAAGCTACACAGAGAAACCCTGTCTCAAAAACAAAAACAAAA  484

seq1  CAAAAAACAAAGAAGCAAACAAACAACAAATAAAATAAAATGCACAAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAAGAAGCAAACAAACAACAAATAAAATAAAATGCACAAAAG  534

seq1  GGTATTTATCTGACTATTTTGTGGCTTTTCAGGAAAATTTAAAACTACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATCTGACTATTTTGTGGCTTTTCAGGAAAATTTAAAACTACTT  584

seq1  TACCTGCTGAGCTATCCCGCCATCCCTAAAGCACTTATTTTAAATGTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGAGCTATCCCGCCATCCCTAAAGCACTTATTTTAAATGTATT  634

seq1  ATGTGTTTATCTGTGTGTGTATACATGTGCCCATGGAGGACAAAAGGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTATCTGTGTGTGTATACATGTGCCCATGGAGGACAAAAGGACA  684

seq1  GTACTGGATCCCTAGGAGCTAGTGTGCTAATAGGCAGTTGTGAGCGGCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGATCCCTAGGAGCTAGTGTGCTAATAGGCAGTTGTGAGCGGCCC  734

seq1  AACTTGGGTGCTGGGATCCTCTGAGAGAACAGCAAGTTCTCTTAACCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGTGCTGGGATCCTCTGAGAGAACAGCAAGTTCTCTTAACCACT  784

seq1  GAACCATCTCTCCAGTCCACTCAAACATTTAAAAAGAGAAATTTGAAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCTCTCCAGTCCACTCAAACATTTAAAAAGAGAAATTTGAAGGT  834

seq1  GTAGTTCAATTCTCAGGGTTCTCTTCAGAAAACCTGGACAAGTCTGGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAATTCTCAGGGTTCTCTTCAGAAAACCTGGACAAGTCTGGTCA  884

seq1  TTAAAGGTCTTACAAACTTAACTTCCATACTCCTTCGTACTTAAGAGATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCTTACAAACTTAACTTCCATACTCCTTCGTACTTAAGAGATC  934

seq1  ACTGAGAAGTAGCCACTGATCACCCATCATTCCACAACAAAAGGCTCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGTAGCCACTGATCACCCATCATTCCACAACAAAAGGCTCCTA  984

seq1  AAAGGTCCATCTTTTTCAAAAAAGCCACTCTAAACTCATCCTCTCAACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCATCTTTTTCAAAAAAGCCACTCTAAACTCATCCTCTCAACTC  1034

seq1  TGGGCTTGTTCCTTTGTGACATAAGTTATCAGAATTTGAGCCTGCGACAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGTTCCTTTGTGACATAAGTTATCAGAATTTGAGCCTGCGACAA  1084

seq1  CAACAAAATGTTTGGAGGGAACTGATTTCTTAGGCTTAAAGACACTATCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATGTTTGGAGGGAACTGATTTCTTAGGCTTAAAGACACTATCT  1134

seq1  TTAGTATCTGGTACTAGCTGAAGCATCAAATTTGAATTTGAGGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTGGTACTAGCTGAAGCATCAAATTTGAATTTGAGGAATTC  1182

seq1: chr3_107296462_107297106
seq2: B6Ng01-091J14.g_67_711

seq1  GAATTCAGACCATTGGTTAAATATATATTGGTTAAATGTATGAGCATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCATTGGTTAAATATATATTGGTTAAATGTATGAGCATGGG  50

seq1  AAAGTGGCTTCAGAATCTGTTTTTCCATCTGTGGAGTGGGACAGTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCTTCAGAATCTGTTTTTCCATCTGTGGAGTGGGACAGTCTGCT  100

seq1  TCACACAAATTAAAACTCTTCTTAGACGTATGCTATCGAGGTAACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAATTAAAACTCTTCTTAGACGTATGCTATCGAGGTAACACAGT  150

seq1  ACTTCATAATAACTGAACAAAATTCAATCCTCGAGACCTCTGTGAGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAATAACTGAACAAAATTCAATCCTCGAGACCTCTGTGAGTCAG  200

seq1  ACCAAAAGGAGATCAGTAGGTCATTCCTTCAGGAGAAGGGGGCAAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGGAGATCAGTAGGTCATTCCTTCAGGAGAAGGGGGCAAAAATG  250

seq1  AGGACCAGGTTTGGAATGCTTTCTCCAAGGTGACTCAAAACCCAACGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGGTTTGGAATGCTTTCTCCAAGGTGACTCAAAACCCAACGAAA  300

seq1  ACCCAAATCTGAGCACTAGACAGTTTAGACTCCTTCCTGGGACAGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATCTGAGCACTAGACAGTTTAGACTCCTTCCTGGGACAGGGCTG  350

seq1  ACTGGAGATCACAGCTGGGGTTCCTTAGGGATCCCACACTTGCCTGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGATCACAGCTGGGGTTCCTTAGGGATCCCACACTTGCCTGCTAC  400

seq1  AGTCCCATTCCTGATGACAGGACATTCACTCCAGGGCAGTGGGTACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATTCCTGATGACAGGACATTCACTCCAGGGCAGTGGGTACTGGA  450

seq1  AAGACTTGAAGAAATAGAAGACGCTCCACCCAATGATCACATTGTAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGAAGAAATAGAAGACGCTCCACCCAATGATCACATTGTAGTAC  500

seq1  AGCCCAACGAAGAGGCAGACCTGAGGATGAGGGCCAAAATAAGATAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACGAAGAGGCAGACCTGAGGATGAGGGCCAAAATAAGATAATCA  550

seq1  TAGAGGCTAGAGGTAAGCCATACCTCCCCACACACCATCCAAGGCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTAGAGGTAAGCCATACCTCCCCACACACCATCCAAGGCCTAGC  600

seq1  AGCTCAAAAACAGCCTTGATGGAGGATGAGGGGGGATGAGATGGA  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAAACAGCCTTGATGGAGGATGAGGGGGGATGAGATGGA  645