BAC Information

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BAC

Clone NameB6Ng01-091K10
Chromosome3 (Build37)Y (Build37)
Map Location 69,154,308 - 69,155,5461,870,346 - 1,870,571
singlet/doubletsingletsinglet
Overlap genePpm1l
Upstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneLOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091K10.bB6Ng01-091K10.g
ACCDH903618DH903619
length1,223411
definitionDH903618|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K10, 5' end.DH903619|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,154,308 - 69,155,546)(1,870,346 - 1,870,571)
sequence
gaattcaccaggacaactaggcttgctgaccaatgggtcccacgaatcca
cctgtctccacctctccagtgatgggcttaaaagcacactccaccacata
gagctttttgtgaatgggttctgggaatctcacgcaggccttcatgcttg
caaagctttttactgagctatctccctctcccctcgttcttaagacttct
tcagcactaaattaagccaagggaacactgccccataatcaggggaagaa
cctaagacaggttagaagagcatcttaggcaagcgctttaaagatgtatt
acagcccacccagctagcacagtgtaacttatcgcaaatgctcaattaaa
aaacactagggaccagtgagctcagctaataaggggacttgcctccaaac
ctggaaaatctgagttccatcctcagaatccccatggtagaaggagaaag
agcaatgcccgcaagttgtctcgtgacctcttccatacaccaaatagggt
gtgagccatgtatacacacacacacacacacacacacattcgccccagag
taaatagatgtaacttattttttaaaactccagctgtttagatgctgaat
gctattctgttcaaataagagtaattttaaataaaaacgaaaatgacata
cacttgggaagagtaagtttcccatgccagccagctgataatcagctgtg
aaatatatattgatactatattaggctagtaaggaaatttacctaataga
taaataaataaacaaacctgccgtgcattttcaagttttccattgagaaa
ggtactaaggactttgacaatcagctgaaggtcacagagaagtgatacag
atagagcccaggttggtgttcccaatccaccacccaacagtgacctacag
gcaggaatgttaacgatgcaattaaaagctctccaaattaaaactgccta
aaggaaaaaggatcagaagaaactgtattttcatatataacactaaagac
caaagtggtcacctataaaccaatatcatctgaggctacttaaataacta
ttttaaaatccatacgtgcatcttcttcttgaaaacctcaagaatgtggt
tgtggatgagcaaataatttccctcattatgtacctggccaggtacaagg
tttctgagtatcagcaagcatgtctatctagaaaactggaagtgatagct
aaaacctggttcttgtcagctcg
catatccagggatccaccccataatcagcatccaaacgctgacaccattg
catacactagcaagattttatcgaaaggacccagatgtagctgtctcttg
tgagactatgccggggcctagcaaacacagaaatggatgctcacagtcag
ctaatggatggatcacagggctcccaatggaggagctagagaaagtagcc
aaggagctaaagggatctgcaaccctataggtggaacaacattatgaact
aaccagtaccccggagctcttgactctagctacatatgtatcaaaagatg
gcctagtcggccatcactggaaagagaggcccattggacacgcaaacttt
atatgccccagtacaggggaacgccagggccaaaaagggggagtgggtgg
gtaggggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69154308_69155546
seq2: B6Ng01-091K10.b_49_1271 (reverse)

seq1  CGAGCCTGACAAGAACAGGGGTTTCTTAGCTACTACATCTTCAG-TGTCT  49
      |||| |||||||||||  ||   | |||||||  || ||  ||| | |||
seq2  CGAG-CTGACAAGAACCAGG---TTTTAGCTATCACTTC--CAGTTTTCT  44

seq1  AGATAGCACTTGGCTTGCCCTTGGTACTCAGGAAACCCCTGGTACCTGGC  99
      |||||| || | ||||||   || ||||||| ||   ||| |||||||||
seq2  AGATAG-ACAT-GCTTGC---TGATACTCAGAAA---CCTTGTACCTGGC  86

seq1  CAGGTACATTAATGAGTGAAATTATTTGCTCAT-CACAA-CACATTTTCC  147
      |||||||| ||||||| |||||||||||||||| ||||| ||||||   |
seq2  CAGGTACA-TAATGAGGGAAATTATTTGCTCATCCACAACCACATT---C  132

seq1  TTGAGGTTTTCAAGAAGAAGATGCACGTATGGATTTTAAAAATAGTTATT  197
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAGGTTTTCAAGAAGAAGATGCACGTATGGATTTT-AAAATAGTTATT  181

seq1  TAAGTAGCCTCAGATGATATTGGTTTATAGGTGACCACTTTGGTCTTTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCCTCAGATGATATTGGTTTATAGGTGACCACTTTGGTCTTTAG  231

seq1  TGTTATATATGAAAATACAGTTTCTTCTGATCCTTTTTCCTTTAGGCAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATATGAAAATACAGTTTCTTCTGATCCTTTTTCCTTTAGGCAGT  281

seq1  TTTAATTTTGGAGAGCTTTTAATTGCATCGTTAACATTCCTGCCTGTAGG  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAA-TTTGGAGAGCTTTTAATTGCATCGTTAACATTCCTGCCTGTAGG  330

seq1  TCACTGTTGGGTGGTGGATTGGGAACACCAACCTGGGCTCTATCTGTATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGGGTGGTGGATTGGGAACACCAACCTGGGCTCTATCTGTATC  380

seq1  ACTTCTCTGTGACCTTCAGCTGATTGTCAAAGTCCTTAGTACC-TTCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTCTCTGTGACCTTCAGCTGATTGTCAAAGTCCTTAGTACCTTTCTCA  430

seq1  ATGGAAAACTTGAAAATGCACGGCAGGTTTGTTTATTTATTTATCTATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACTTGAAAATGCACGGCAGGTTTGTTTATTTATTTATCTATTA  480

seq1  GGTAAATTTCCTTACTAGCCTAATATAGTATCAATATATATTTCACAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTCCTTACTAGCCTAATATAGTATCAATATATATTTCACAGCT  530

seq1  GATTATCAGCTGGCTGGCATGGGAAACTTACTCTTCCCAAGTGTATGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAGCTGGCTGGCATGGGAAACTTACTCTTCCCAAGTGTATGTCA  580

seq1  TTTTCGTTTTTATTTAAAATTACTCTTATTTGAACAGAATAGCATTCAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTTTTTATTTAAAATTACTCTTATTTGAACAGAATAGCATTCAGC  630

seq1  ATCTAAACAGCTGGAGTTTTAAAAAATAAGTTACATCTATTTACTCTGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAGCTGGAGTTTTAAAAAATAAGTTACATCTATTTACTCTGGG  680

seq1  GCGAATGTGTGTGTGTGTGTGTGTGTGTGTATACATGGCTCACACCCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATGTGTGTGTGTGTGTGTGTGTGTGTATACATGGCTCACACCCTAT  730

seq1  TTGGTGTATGGAAGAGGTCACGAGACAACTTGCGGGCATTGCTCTTTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATGGAAGAGGTCACGAGACAACTTGCGGGCATTGCTCTTTCTC  780

seq1  CTTCTACCATGGGGATTCTGAGGATGGAACTCAGATTTTCCAGGTTTGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCATGGGGATTCTGAGGATGGAACTCAGATTTTCCAGGTTTGGA  830

seq1  GGCAAGTCCCCTTATTAGCTGAGCTCACTGGTCCCTAGTGTTTTTTAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCCCCTTATTAGCTGAGCTCACTGGTCCCTAGTGTTTTTTAATT  880

seq1  GAGCATTTGCGATAAGTTACACTGTGCTAGCTGGGTGGGCTGTAATACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGCGATAAGTTACACTGTGCTAGCTGGGTGGGCTGTAATACAT  930

seq1  CTTTAAAGCGCTTGCCTAAGATGCTCTTCTAACCTGTCTTAGGTTCTTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGCGCTTGCCTAAGATGCTCTTCTAACCTGTCTTAGGTTCTTCC  980

seq1  CCTGATTATGGGGCAGTGTTCCCTTGGCTTAATTTAGTGCTGAAGAAGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTATGGGGCAGTGTTCCCTTGGCTTAATTTAGTGCTGAAGAAGTC  1030

seq1  TTAAGAACGAGGGGAGAGGGAGATAGCTCAGTAAAAAGCTTTGCAAGCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACGAGGGGAGAGGGAGATAGCTCAGTAAAAAGCTTTGCAAGCAT  1080

seq1  GAAGGCCTGCGTGAGATTCCCAGAACCCATTCACAAAAAGCTCTATGTGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTGCGTGAGATTCCCAGAACCCATTCACAAAAAGCTCTATGTGG  1130

seq1  TGGAGTGTGCTTTTAAGCCCATCACTGGAGAGGTGGAGACAGGTGGATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGCTTTTAAGCCCATCACTGGAGAGGTGGAGACAGGTGGATTC  1180

seq1  GTGGGACCCATTGGTCAGCAAGCCTAGTTGTCCTGGTGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCCATTGGTCAGCAAGCCTAGTTGTCCTGGTGAATTC  1223

seq1: chrY_1870346_1870571
seq2: B6Ng01-091K10.g_261_486

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| ||| |||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTACAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTG  226
      ||||| ||||||||||||||||| ||
seq2  AGGGGGAGTGGGTGGGTAGGGGATTG  226