BAC Information

Click to search

BAC

Clone NameB6Ng01-091L15
Chromosome3 (Build37)
Map Location 28,010,339 - 28,164,685
singlet/doubletdoublet
Overlap genePld1, Tnik
Upstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091L15.bB6Ng01-091L15.g
ACCDH903674DH903675
length1,0791,101
definitionDH903674|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L15, 5' end.DH903675|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,163,605 - 28,164,685)(28,010,339 - 28,011,450)
sequence
gaattcattgggcttcttgggtgacaaagagcaatctcagtaaatcatac
aaagatatctgttccacatacacatagcagagcccgggagtttcctcaag
tatgcatcaaggtgctctgtgcttggtatctcagaaaaccttgcccacag
gagctagtcccctcctcccagccccccaacttaaaaatcatatcagggag
aaggatgctaagattcctgctcagctatatcacaaggctgcctcattgtt
caggcctccacctcttagccactcctccttctccaagtctggtccacctg
attaactcacaccatagcaactcccagacagaagtagagcacacaccatg
ggtgaagaggaagccgcgcttgtttaaagcacccactctgctcccaaccc
ccacacttagctactcactggttctgaatgtggcctttgggcaccagaaa
aacagacagcttactgtaatcatgcatgaatgagcttctgctgccccact
agcacaacaggccgtttcatagggcagtcagtcctcaaccttcgagttgt
ctctctgaattgtcacctctctctctctaccaaaagatatgggaaggggc
aaggattcaaggagagggaagaaaagagactcgtggagcctgaagaaaaa
gtatcacctccatcagacaggtatctagccccttaaaatatttgtagaga
aatgtaagggcaggaaggctttagtagacacaggtaaacggcctcaagat
tctagcatcaatctaacaatgtgttccggagaaccactgaacttccaccc
ctactggcggtgggtgacatgagatgagacaccatctcttaggtctcacc
taccctccaggcatcaagcatatgcatttgctgtttattttatttttagt
tcgggagaggaagaaactagtggaactgagattggtgtccaatcttttct
cagatgcctgctgctgccaaggcaccacccctctcacccccttcctggca
gcagcatctaattaaatggcagagcgctcggctccttcctcgaaggaggg
tgctgggattagaagggtggggggtgggg
gaattcctttagtgttgtttgcggttgcattcgtgagaggtgatttgtgg
cggcgtgagcatcctggtggcatgccactgaagaaaatgtcccctgtgac
atgatagaacctcaggatggctggtgtcccttgcttgtccgttagagtca
tcaatatttaacagcttgagagaccaaaaatcctcagcagagccagttat
ttaaaccttgatttttctcatgtccaggtttttgctgactcgatggaaat
agcccagtaaaatagtttgctctgtccctggtgctttgccaaaagtttgc
ccttttcacccccgaaagcaggatgactgtataagtgctcttatctggga
acactcccaaacttatcgttcccgtcacaaggttttctaagggaaagttc
atgcagagcccatctctctccctaaaacctggatcagttttataactctt
ccatcagctcacctcaaaataactaccttggtttttttttttcagtaaca
ttacaaaaaaattcctgttacagttttaacttttgaaaatgggcatagca
ctttctcatgaaagtacatgtcctgtttctgcttgggttagggtcatgtc
cacaggtactggtgtcagacttggttattgggcatctccataactgtgcc
tttacatgtgtgggcatctccataactgtgcctttacatgtgtgggcatc
tccataactgtgcctttacaggtatggggacctctgtatctgtgccttta
catgtgtggggaacctccacaactgtgcttttacacatgtggggacgtct
gtaactgtctctttccgtgttttcagaaccatgtgcagaggggagagctc
catccttgaacagttaaagccagagcgtaagtcatgcttttttttttctt
ctgcaattgtttctagggaacatcaggagttagcaggattagaggtggag
aggatgctgacataccctttgtcctttttgttcagtctgagcctgatatg
gatggtgctcacactagtagggagtagactttcttactacatctagaaac
ccgtcatgcacatctcaatggaaaacaaaaactatcctggcaatgtgaat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28163605_28164685
seq2: B6Ng01-091L15.b_47_1125 (reverse)

seq1  CCCCA-CCCCCACC--TCTAATCCCAGCACACTCCTTCGGGGAAGGGGGC  47
      ||||| ||||||||  |||||||||||||| |||||||| |||| || ||
seq2  CCCCACCCCCCACCCTTCTAATCCCAGCACCCTCCTTCGAGGAA-GGAGC  49

seq1  CGAGCGCTCTTGCCATTTTAATTAGATGCTGCCTGCCAGGAAGGGGGTGA  97
      ||||||||| ||||| ||||||||||||||| ||||||||||||||||||
seq2  CGAGCGCTC-TGCCA-TTTAATTAGATGCTG-CTGCCAGGAAGGGGGTGA  96

seq1  GGAGGGGTGGTGGCCTTGGCAGCAGCAGGCATCTGAG-AAAGATTGGACA  146
       |||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  -GAGGGGTGGT-GCCTTGGCAGCAGCAGGCATCTGAGAAAAGATTGGACA  144

seq1  CCAATCTCAGTTCCACTAGTTTCTTCCTCTCCCGAACTAAAAATAAAATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCAGTTCCACTAGTTTCTTCCTCTCCCGAACTAAAAATAAAATA  194

seq1  AACAGCAAATGCATATGCTTGATGCCTGGAGGGTAGGTGAGACCTAAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAATGCATATGCTTGATGCCTGGAGGGTAGGTGAGACCTAAGAG  244

seq1  ATGGTGTCTCATCTCATGTCACCCACCGCCAGTAGGGGTGGAAGTTCAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCTCATCTCATGTCACCCACCGCCAGTAGGGGTGGAAGTTCAGT  294

seq1  GGTTCTCCGGAACACATTGTTAGATTGATGCTAGAATCTTGAGGCCGTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCGGAACACATTGTTAGATTGATGCTAGAATCTTGAGGCCGTTT  344

seq1  ACCTGTGTCTACTAAAGCCTTCCTGCCCTTACATTTCTCTACAAATATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCTACTAAAGCCTTCCTGCCCTTACATTTCTCTACAAATATTT  394

seq1  TAAGGGGCTAGATACCTGTCTGATGGAGGTGATACTTTTTCTTCAGGCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGCTAGATACCTGTCTGATGGAGGTGATACTTTTTCTTCAGGCTC  444

seq1  CACGAGTCTCTTTTCTTCCCTCTCCTTGAATCCTTGCCCCTTCCCATATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCTCTTTTCTTCCCTCTCCTTGAATCCTTGCCCCTTCCCATATC  494

seq1  TTTTGGTAGAGAGAGAGAGGTGACAATTCAGAGAGACAACTCGAAGGTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGAGAGAGAGAGGTGACAATTCAGAGAGACAACTCGAAGGTTG  544

seq1  AGGACTGACTGCCCTATGAAACGGCCTGTTGTGCTAGTGGGGCAGCAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGACTGCCCTATGAAACGGCCTGTTGTGCTAGTGGGGCAGCAGAA  594

seq1  GCTCATTCATGCATGATTACAGTAAGCTGTCTGTTTTTCTGGTGCCCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCATGCATGATTACAGTAAGCTGTCTGTTTTTCTGGTGCCCAAA  644

seq1  GGCCACATTCAGAACCAGTGAGTAGCTAAGTGTGGGGGTTGGGAGCAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTCAGAACCAGTGAGTAGCTAAGTGTGGGGGTTGGGAGCAGAG  694

seq1  TGGGTGCTTTAAACAAGCGCGGCTTCCTCTTCACCCATGGTGTGTGCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTTAAACAAGCGCGGCTTCCTCTTCACCCATGGTGTGTGCTCT  744

seq1  ACTTCTGTCTGGGAGTTGCTATGGTGTGAGTTAATCAGGTGGACCAGACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTCTGGGAGTTGCTATGGTGTGAGTTAATCAGGTGGACCAGACT  794

seq1  TGGAGAAGGAGGAGTGGCTAAGAGGTGGAGGCCTGAACAATGAGGCAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGAGGAGTGGCTAAGAGGTGGAGGCCTGAACAATGAGGCAGCC  844

seq1  TTGTGATATAGCTGAGCAGGAATCTTAGCATCCTTCTCCCTGATATGATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATATAGCTGAGCAGGAATCTTAGCATCCTTCTCCCTGATATGATT  894

seq1  TTTAAGTTGGGGGGCTGGGAGGAGGGGACTAGCTCCTGTGGGCAAGGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGGGGGGCTGGGAGGAGGGGACTAGCTCCTGTGGGCAAGGTTT  944

seq1  TCTGAGATACCAAGCACAGAGCACCTTGATGCATACTTGAGGAAACTCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATACCAAGCACAGAGCACCTTGATGCATACTTGAGGAAACTCCC  994

seq1  GGGCTCTGCTATGTGTATGTGGAACAGATATCTTTGTATGATTTACTGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGCTATGTGTATGTGGAACAGATATCTTTGTATGATTTACTGAG  1044

seq1  ATTGCTCTTTGTCACCCAAGAAGCCCAATGAATTC  1081
      |||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTTGTCACCCAAGAAGCCCAATGAATTC  1079

seq1: chr3_28010339_28011450
seq2: B6Ng01-091L15.g_69_1169

seq1  GAATTCCTTTAGTGTTGTTTGCGGTTGCATTCGTGAGAGGTGATTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGTGTTGTTTGCGGTTGCATTCGTGAGAGGTGATTTGTGG  50

seq1  CGGCGTGAGCATCCTGGTGGCATGCCACTGAAGAAAATGTCCCCTGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTGAGCATCCTGGTGGCATGCCACTGAAGAAAATGTCCCCTGTGAC  100

seq1  ATGATAGAACCTCAGGATGGCTGGTGTCCCTTGCTTGTCCGTTAGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAACCTCAGGATGGCTGGTGTCCCTTGCTTGTCCGTTAGAGTCA  150

seq1  TCAATATTTAACAGCTTGAGAGACCAAAAATCCTCAGCAGAGCCAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTAACAGCTTGAGAGACCAAAAATCCTCAGCAGAGCCAGTTAT  200

seq1  TTAAACCTTGATTTTTCTCATGTCCAGGTTTTTGCTGACTCGATGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTTGATTTTTCTCATGTCCAGGTTTTTGCTGACTCGATGGAAAT  250

seq1  AGCCCAGTAAAATAGTTTGCTCTGTCCCTGGTGCTTTGCCAAAAGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTAAAATAGTTTGCTCTGTCCCTGGTGCTTTGCCAAAAGTTTGC  300

seq1  CCTTTTCACCCCCGAAAGCAGGATGACTGTATAAGTGCTCTTATCTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCACCCCCGAAAGCAGGATGACTGTATAAGTGCTCTTATCTGGGA  350

seq1  ACACTCCCAAACTTATCGTTCCCGTCACAAGGTTTTCTAAGGGAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCAAACTTATCGTTCCCGTCACAAGGTTTTCTAAGGGAAAGTTC  400

seq1  ATGCAGAGCCCATCTCTCTCCCTAAAACCTGGATCAGTTTTATAACTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGCCCATCTCTCTCCCTAAAACCTGGATCAGTTTTATAACTCTT  450

seq1  CCATCAGCTCACCTCAAAATAACTACCTTGGTTTTTTTTTTTCAGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCTCACCTCAAAATAACTACCTTGGTTTTTTTTTTTCAGTAACA  500

seq1  TTACAAAAAAATTCCTGTTACAGTTTTAACTTTTGAAAATGGGCATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAAAATTCCTGTTACAGTTTTAACTTTTGAAAATGGGCATAGCA  550

seq1  CTTTCTCATGAAAGTACATGTCCTGTTTCTGCTTGGGTTAGGGTCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATGAAAGTACATGTCCTGTTTCTGCTTGGGTTAGGGTCATGTC  600

seq1  CACAGGTACTGGTGTCAGACTTGGTTATTGGGCATCTCCATAACTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTACTGGTGTCAGACTTGGTTATTGGGCATCTCCATAACTGTGCC  650

seq1  TTTACATGTGTGGGCATCTCCATAACTGTGCCTTTACATGTGTGGGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTGTGGGCATCTCCATAACTGTGCCTTTACATGTGTGGGCATC  700

seq1  TCCATAACTGTGCCTTTACAGGTATGGGGACCTCTGTATCTGTGCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACTGTGCCTTTACAGGTATGGGGACCTCTGTATCTGTGCCTTTA  750

seq1  CATGTGTGGGGAACCTCCACAACTGTGCTTTTACACATGTGGGGACGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGGGGAACCTCCACAACTGTGCTTTTACACATGTGGGGACGTCT  800

seq1  GTAACTGTCTCTTTCCGTGTTTTCAGAACCATGTGCAGAGGGGAGAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTCTCTTTCCGTGTTTTCAGAACCATGTGCAGAGGGGAGAGCTC  850

seq1  CATCCTTGAACAGTTAAAGCCAGAGCGTAAGTCATGC-TTTTTTTTTCTT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATCCTTGAACAGTTAAAGCCAGAGCGTAAGTCATGCTTTTTTTTTTCTT  900

seq1  CTGCAATTGTTTCTAGGGAACATCAGGAGTTAGCAGGATTAGAGGTGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTGTTTCTAGGGAACATCAGGAGTTAGCAGGATTAGAGGTGGAG  950

seq1  AGGATGCTGACATACCCTTTGTCCTTTTTGTTCAGTCTGGAGCCTGATTA  999
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AGGATGCTGACATACCCTTTGTCCTTTTTGTTCAGTCT-GAGCCTGA-TA  998

seq1  TGGAATGGTGCTCACACTAGTA-GGAGTAGACCTTCCTACTTAACCAATC  1048
      ||| |||||||||||||||||| ||||||||| ||| ||||  ||  |||
seq2  TGG-ATGGTGCTCACACTAGTAGGGAGTAGACTTTCTTACT--AC--ATC  1043

seq1  TAGAAAACCCGTCATGCACACATCTCAAATGGATAAACAAAAAACTATCC  1098
      ||| ||||||||||||  |||||||| |||||| |||| |||||||||||
seq2  TAG-AAACCCGTCATG--CACATCTC-AATGGA-AAAC-AAAAACTATCC  1087

seq1  TGGCAATGTGAATG  1112
      ||||||||||||||
seq2  TGGCAATGTGAATG  1101