BAC Information

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BAC

Clone NameB6Ng01-091L16
Chromosome3 (Build37)
Map Location 45,974,603 - 45,975,814
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091L16.bB6Ng01-091L16.g
ACCDH903676DH903677
length1,1961,178
definitionDH903676|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L16, 5' end.DH903677|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattggcagcaaatcttttttcgaatgcttgtagataggttgcct
tccttggtgtcaattcatacagttgcttgagttgatataatttgtattct
actcacaaacactaaatatagtaaaatgtcatcgttgtcacaaaagcatt
attcttaaaataatgacaaaaataatcattgaatgcgcacctgtatagca
atatcatatacctgaaatcctcttagctctttacatattacatacacaat
ctcttgctttctgttgaaagcattaagtatgaaaaatagtggcatagttt
acagatagaagctgtagaaacaacctgagagagagtgattgaattataga
ccttggggtatataaccgtctttgaatctgttgactaatcttggagttta
caactttagctatttgcttcaatggttactttataaaccctttaatcaat
gagttagggcttgaaagagcagatgactaaaactcagtgatgttactgaa
cacacacataatgcctcagaagtaaaatcagcagatagaaactgatttaa
ttggtcctgtagctgacaaagtcttctgttgaagtcgtccttgctggcat
catatttattcttgacacaaggagtaagctcaagtgctcctcacaggctc
agtgctcaaacagagaaagtgtatggtgttgcgtccttcactggcacagt
acccattgttaaaattccaggttttattgaaattatttaccacttactga
aattttaggtgctcatttcataaaacacaaatcatggggctataaacccc
aaattttagcatccaaattcagatttaacattataacatataggcaattt
tgttgttataatttttatataaaggatctgtgctcctttaagctatttgt
ttttattagatattttcatttacatttcaaatgttatcccctttcctagt
ttcctctctgaaaaccacctataccttcccctctccctgcttacaaccca
ccctctctgcttctgaccctggcatttccctatactgggggcatagaatc
ttcacagacaagcttctctacattgataagactattaattagtcatcctc
tgctactatgcagctagaaacatgagatttgggagtttgataagttaatc
aattgtttcctctttagggactgcggacattcactcctgggcattt
gaattccaggacacaatgagaagaccaaacctatggataataggagtaga
tgagaatgaagattttcaactcaaagggcaggcaaatatcttcaacaaaa
ttatagaagaaaacttcccaaacctgaagaaagagatgcccatgaacata
caagaagcctacagaaccccaaatagactggaatagaaaagaaatccctc
ccttcacataataatcagaacaacaaatgcactaaataaagatagaatat
taaaagcagcaagggaaaagggtaaagtaacatataaaggcaagcctatc
agaattacaccagatttttcaacagagactatgaaagcaagaagaccttg
gacagatgttatacagacactaagagaacaaaaatgccaacccaggatac
tatacccagccaaactttcaataaccttagatggagaaacaaaagtattc
catgacagaaccaaattcagacattatcattccatgaatccagcccttca
aaggataataacagaaaaaaaaaaaaaaaaaacaaaaaaaaccaatacga
ggatggaaaccatgtcctagaaaaagcaagaaggtaatccctcaaaaaac
ctaaaacaagacagccacaagaacagaatacgaactttaacaacaaaaat
aataggaagcaacaattacttctccttaataacttttaatatcaatggac
tcaactccccaataaaaagacatagactaatagacaggttacacaaaaat
gatccgacattttgctgcttacaggaaacccatttcagggtaaaagatag
acacgacctcagaatgaaaggctggaaaacaattttccaagcaaatgatc
tgaagaaacaagctggagtagccattctaatatataataaaatcgacttc
caacccagtcatcaaaaagaaagaggggcaattcatactcataaagtaaa
tctcagagaaatctcatctgatatctatgctcaatacagcagcacagtca
taagaacttactaagctatcacacatgcacctcatacaataatagtggac
tcaacccacttccatgacgatctggacggactaacggtacagtgactacg
agtttgacatggatgacgattccgacttactgacagatacttcttcgact
atgtacttccgattgaccatacctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45974603_45975814
seq2: B6Ng01-091L16.b_49_1244

seq1  GAATTCATTGGCAGCAAATCTTTTTTCGAATGCTTGTAGATAGGTTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCAGCAAATCTTTTTTCGAATGCTTGTAGATAGGTTGCCT  50

seq1  TCCTTGGTGTCAATTCATACAGTTGCTTGAGTTGATATAATTTGTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGTCAATTCATACAGTTGCTTGAGTTGATATAATTTGTATTCT  100

seq1  ACTCACAAACACTAAATATAGTAAAATGTCATCGTTGTCACAAAAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAACACTAAATATAGTAAAATGTCATCGTTGTCACAAAAGCATT  150

seq1  ATTCTTAAAATAATGACAAAAATAATCATTGAATGCGCACCTGTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAATAATGACAAAAATAATCATTGAATGCGCACCTGTATAGCA  200

seq1  ATATCATATACCTGAAATCCTCTTAGCTCTTTACATATTACATACACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATACCTGAAATCCTCTTAGCTCTTTACATATTACATACACAAT  250

seq1  CTCTTGCTTTCTGTTGAAAGCATTAAGTATGAAAAATAGTGGCATAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTTCTGTTGAAAGCATTAAGTATGAAAAATAGTGGCATAGTTT  300

seq1  ACAGATAGAAGCTGTAGAAACAACCTGAGAGAGAGTGATTGAATTATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGAAGCTGTAGAAACAACCTGAGAGAGAGTGATTGAATTATAGA  350

seq1  CCTTGGGGTATATAACCGTCTTTGAATCTGTTGACTAATCTTGGAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGTATATAACCGTCTTTGAATCTGTTGACTAATCTTGGAGTTTA  400

seq1  CAACTTTAGCTATTTGCTTCAATGGTTACTTTATAAACCCTTTAATCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAGCTATTTGCTTCAATGGTTACTTTATAAACCCTTTAATCAAT  450

seq1  GAGTTAGGGCTTGAAAGAGCAGATGACTAAAACTCAGTGATGTTACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGGCTTGAAAGAGCAGATGACTAAAACTCAGTGATGTTACTGAA  500

seq1  CACACACATAATGCCTCAGAAGTAAAATCAGCAGATAGAAACTGATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATAATGCCTCAGAAGTAAAATCAGCAGATAGAAACTGATTTAA  550

seq1  TTGGTCCTGTAGCTGACAAAGTCTTCTGTTGAAGTCGTCCTTGCTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGTAGCTGACAAAGTCTTCTGTTGAAGTCGTCCTTGCTGGCAT  600

seq1  CATATTTATTCTTGACACAAGGAGTAAGCTCAAGTGCTCCTCACAGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATTCTTGACACAAGGAGTAAGCTCAAGTGCTCCTCACAGGCTC  650

seq1  AGTGCTCAAACAGAGAAAGTGTATGGTGTTGCGTCCTTCACTGGCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAAACAGAGAAAGTGTATGGTGTTGCGTCCTTCACTGGCACAGT  700

seq1  ACCCATTGTTAAAATTCCAGGTTTTATTGAAATTATTTACCACTTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTGTTAAAATTCCAGGTTTTATTGAAATTATTTACCACTTACTGA  750

seq1  AATTTTAGGTGCTCATTTCATAAAACACAAATCATGGGGCTATAAACCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGGTGCTCATTTCATAAAACACAAATCATGGGGCTATAAACCCC  800

seq1  AAATTTTAGCATCCAAATTCAGATTTAACATTATAACATATAGGCAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGCATCCAAATTCAGATTTAACATTATAACATATAGGCAATTT  850

seq1  TGTTGTTATAATTTTTATATAAAGGATCTGTGCTCCTTTAAGCTATTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATAATTTTTATATAAAGGATCTGTGCTCCTTTAAGCTATTTGT  900

seq1  TTTTATTAGATATTTTCATTTACATTTCAAATGTTATCCCCTTTCCTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGATATTTTCATTTACATTTCAAATGTTATCCCCTTTCCTAGT  950

seq1  TTCCTCTCTGAAAACCACCTATACCTTCCCCTCTCCCCTGCTTACCAACC  1000
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TTCCTCTCTGAAAACCACCTATACCTTCCCCTCT-CCCTGCTTA-CAACC  998

seq1  CACCCTCTCCTGCTTCCTGACCCTGGCATTTCCCTATACT-GGGGCATAG  1049
      |||||||| |||||| |||||||||||||||||||||||| |||||||||
seq2  CACCCTCT-CTGCTT-CTGACCCTGGCATTTCCCTATACTGGGGGCATAG  1046

seq1  AATCTTCACAAGACAAAGGGCTTCTCTACCATTGATAAGGACTATTAATT  1099
      ||||||||| ||||||   ||||||||| ||||||||| |||||||||||
seq2  AATCTTCAC-AGACAA---GCTTCTCTA-CATTGATAA-GACTATTAATT  1090

seq1  AGGCCATCCTCTGCTACCTATGCAGCTAGAGACATGAGATTTGGGAGTTC  1149
      | | |||||||||||| ||||||||||||| |||||||||||||||||| 
seq2  A-GTCATCCTCTGCTA-CTATGCAGCTAGAAACATGAGATTTGGGAGTT-  1137

seq1  TGATTAGTTCATACTATTG-TTCCTCCTATAGGACTGCAGACCATTTCAA  1198
      |||| |||| || | |||| |||||| |   ||||||| |||   |||| 
seq2  TGATAAGTTAAT-CAATTGTTTCCTCTTTAGGGACTGCGGAC--ATTCA-  1183

seq1  CTTCCTGGGCATTT  1212
        ||||||||||||
seq2  -CTCCTGGGCATTT  1196