BAC Information

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BAC

Clone NameB6Ng01-091M20
Chromosome3 (Build37)
Map Location 18,601,396 - 18,602,627
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091M20.bB6Ng01-091M20.g
ACCDH903732DH903733
length1,227960
definitionDH903732|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M20, 5' end.DH903733|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccaacatggactgtatgaaatcctttctcagaaagaaaag
aaagagaaggaaggttaaatggaccaaacatcaaagcaaaaaacaaaaca
atacaaaaatttcctctcagtgtaatcactattgcattcccaaactttaa
aatgggtgagagcatccagtttattctctctataactagtccatctcttc
atttaacagatcagaaaactaagatcagggtcagtaaagtgacttgctca
aagcttagaaatttggtgaatatagttgccatgtaaatacaaaagcaagt
tgttgaatagagacatatatagaaagctatggaagcagaggtggaggagg
cttggctaagatgacaaccttgggaagaaagggtgtcccatctgtcctaa
gggtgagaaaggcatttcatttagaaaatgaagcctgtcagagcctaggt
gtaggaagccatatgagtcccagagaacataaaccttcattatgggttta
gtatcctgaccacagatatatttgtatctgttaaagctgttaaagaagac
aaagccatctgaactttgttcttctgtgtgatgacaggggtttttaaaga
cctcttagagagtaatgtcaaaagaagcacatccaatcttgagctaaata
gggtgagggactccatctccctcccagaggtgtaccacagctggtgtgaa
aacaatctagcatttagtggtctccctgaatagaagaaaagactacttga
acttcagactaggtgtttcctgctggattggagccaaataacgtttaaat
attagtctatccctgatggccatagctgaatctcttaacttgggcaagca
cactttataactctgatcttcttctctaaccaataacatggtggttgcct
atatatttgtgaaggattggtttgcaggcttctccctgtggatactaagc
tgaagcagtttgagtcttttatataaagcataaaagtattctgtgtctac
ctgcagcatccttctgtataccatatatccttctctagatcattttttaa
tatcttacatgcattaattctgtcaaaggattgccatgctgtaaattttt
aggagtactaatcgaaaagtctggtgcatatttcttacagaatatatacc
ttgttcaatggcaattgggaagatagaatcttcaagtaaagtcacacacg
atgcctcaactcttaaactcacctgct

gaattctcattacagacatgaatggcagcctacattacataatagtagaa
ggaaggtgggttgtggtctaagaaggaaatagagtattgtattgttcttg
taatggttagtagaatggaacttctctggtgcatatttttctctaggccc
agaggagtagcataattaggtatttactacgggacccatggtagtgggtc
aaataatagactagtattgcacctgggcattttagacttttcacctggct
cctgtgaattgctgattttagatagggctgatcttatctcagttataaac
actgcctggttccttccagtctttatgtatgcatttttctctgtttatgt
ttgtttgtttgttttgtaaagaaccattatgcatctcgatgtaccttggc
tgatgtatcacctagcttttttgtttttctctgtattataagtctgatgc
tcgctttgagaaattacatttggatcaacactcccttgtgtttgtgtatg
tttgtcacccagctaactccttgcctacctgtatatagggaccatgattc
cccatgggttgagggacccactgagtccagtccgtggcatatttgtaata
gccagaagctggaaaccacccagatgcccctcaaacaaagaatagatata
gaaaatgtggttcatttacacagtgagatactattcagatattaaaactg
aggacatcatgagttttgcaggcaaatggatggaactagaaaatatcatc
tggggtgaagtaccagacccaaaaggacatacatggtatgtgttcactaa
taagtggatgttagccaaaaagtacagaagacctaggatacaacccacag
accataagaagtttaacaatcagaaggaccaagtgaggatgcttcaatcc
cactgagaagggaaagaacataatcatgggagaagaggggagagggaata
agtgggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18601396_18602627
seq2: B6Ng01-091M20.b_50_1276 (reverse)

seq1  AGCAGGTGAGTTTTATAGGGTGGTAGGATGCTGTGCCCTCTATATCATTT  50
      |||||||||||||   || || |  | ||  ||||      |  | | ||
seq2  AGCAGGTGAGTTT--AAGAGTTGAGGCATCGTGTG----TGACTTTACTT  44

seq1  GAAGATTTCATCTT-CCAATTGCCAACTGAAAACAAGTTATA---TCTGT  96
      |||||||  ||||| ||||||||| | ||  |||||| ||||   |||||
seq2  GAAGATTCTATCTTCCCAATTGCC-ATTG--AACAAGGTATATATTCTGT  91

seq1  ATG-AATATGCA-CAGACTTTTTCCGATTAGTACTCCTAAAAA-TTACAG  143
      | | |||||||| |||||||||  ||||||||||||||||||| ||||||
seq2  AAGAAATATGCACCAGACTTTT--CGATTAGTACTCCTAAAAATTTACAG  139

seq1  CATGGCAACTCCTTTGACAGAATTAATGCCATGTAAGATA-TAAAAAATG  192
      |||||||| ||||||||||||||||||| ||||||||||| |||||||||
seq2  CATGGCAA-TCCTTTGACAGAATTAATG-CATGTAAGATATTAAAAAATG  187

seq1  ATCTAGAG-AGGATATATGGTATACAGAAGGATGCTGCAGGTTAGACACA  241
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ATCTAGAGAAGGATATATGGTATACAGAAGGATGCTGCAGG-TAGACACA  236

seq1  G-ATACTTTTATGCTTTATATAAAAGACTCAAACCTGCTTCAGCTTAGTA  290
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATACTTTTATGCTTTATATAAAAGACTCAAA-CTGCTTCAGCTTAGTA  285

seq1  TCCACAGGGAGAAGCCTGCAAACCAATCCTTCACAAATATATAGGCAACC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGGAGAAGCCTGCAAACCAATCCTTCACAAATATATAGGCAACC  335

seq1  ACCATGTTATTGGTTAGAGAAGAAGATCAGAGTTATAAAGTGTGCTTGCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTGGTTAGAGAAGAAGATCAGAGTTATAAAGTGTGCTTGCC  385

seq1  CAAGTTAAGAGATTCAGCTATGGCCATCAGGGATAGACTAATATTTAAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAAGAGATTCAGCTATGGCCATCAGGGATAGACTAATATTTAAAC  435

seq1  GTTATTTGGCTCCAATCCAGCAGGAAACACCTAGTCTGAAGTTCAAGTAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGGCTCCAATCCAGCAGGAAACACCTAGTCTGAAGTTCAAGTAG  485

seq1  TCTTTTCTTCTATTCAGGGAGACCACTAAATGCTAGATTGTTTTCACACC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCTATTCAGGGAGACCACTAAATGCTAGATTGTTTTCACACC  535

seq1  AGCTGTGGTACACCTCTGGGAGGGAGATGGAGTCCCTCACCCTATTTAGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGTACACCTCTGGGAGGGAGATGGAGTCCCTCACCCTATTTAGC  585

seq1  TCAAGATTGGATGTGCTTCTTTTGACATTACTCTCTAAGAGGTCTTTAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTGGATGTGCTTCTTTTGACATTACTCTCTAAGAGGTCTTTAAA  635

seq1  AACCCCTGTCATCACACAGAAGAACAAAGTTCAGATGGCTTTGTCTTCTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGTCATCACACAGAAGAACAAAGTTCAGATGGCTTTGTCTTCTT  685

seq1  TAACAGCTTTAACAGATACAAATATATCTGTGGTCAGGATACTAAACCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTTAACAGATACAAATATATCTGTGGTCAGGATACTAAACCCA  735

seq1  TAATGAAGGTTTATGTTCTCTGGGACTCATATGGCTTCCTACACCTAGGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGGTTTATGTTCTCTGGGACTCATATGGCTTCCTACACCTAGGC  785

seq1  TCTGACAGGCTTCATTTTCTAAATGAAATGCCTTTCTCACCCTTAGGACA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGCTTCATTTTCTAAATGAAATGCCTTTCTCACCCTTAGGACA  835

seq1  GATGGGACACCCTTTCTTCCCAAGGTTGTCATCTTAGCCAAGCCTCCTCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACACCCTTTCTTCCCAAGGTTGTCATCTTAGCCAAGCCTCCTCC  885

seq1  ACCTCTGCTTCCATAGCTTTCTATATATGTCTCTATTCAACAACTTGCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTTCCATAGCTTTCTATATATGTCTCTATTCAACAACTTGCTT  935

seq1  TTGTATTTACATGGCAACTATATTCACCAAATTTCTAAGCTTTGAGCAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTACATGGCAACTATATTCACCAAATTTCTAAGCTTTGAGCAAG  985

seq1  TCACTTTACTGACCCTGATCTTAGTTTTCTGATCTGTTAAATGAAGAGAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTACTGACCCTGATCTTAGTTTTCTGATCTGTTAAATGAAGAGAT  1035

seq1  GGACTAGTTATAGAGAGAATAAACTGGATGCTCTCACCCATTTTAAAGTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGTTATAGAGAGAATAAACTGGATGCTCTCACCCATTTTAAAGTT  1085

seq1  TGGGAATGCAATAGTGATTACACTGAGAGGAAATTTTTGTATTGTTTTGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGCAATAGTGATTACACTGAGAGGAAATTTTTGTATTGTTTTGT  1135

seq1  TTTTTGCTTTGATGTTTGGTCCATTTAACCTTCCTTCTCTTTCTTTTCTT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTGATGTTTGGTCCATTTAACCTTCCTTCTCTTTCTTTTCTT  1185

seq1  TCTGAGAAAGGATTTCATACAGTCCATGTTGGCCTTGAATTC  1232
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAGGATTTCATACAGTCCATGTTGGCCTTGAATTC  1227


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