BAC Information

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BAC

Clone NameB6Ng01-091O09
Chromosome3 (Build37)
Map Location 99,826,584 - 99,969,495
singlet/doubletdoublet
Overlap geneSpag17, Wdr3, Gdap2
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091O09.bB6Ng01-091O09.g
ACCDH903804DH903805
length3981,137
definitionDH903804|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O09, 5' end.DH903805|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,969,098 - 99,969,495)(99,826,584 - 99,827,741)
sequence
gaattctttggcagctccatccgcacctccaaagagaaactgatttttct
cattaaaaagagatttaactcctgcctgctcccaacataaactcatggcc
atgcttgtgcaaaagcggagcagcgaacccaaaggtggcagaaacctaaa
cactgtctcactccacagaatgtgtggtaagaaatatagcctgtaagaga
tgatgcatatatctgaaaggatttccagacttagattaagaattctaggg
atagactgaaaacaagcagggtggtgggcatgatgggaactgtgtgtgtg
ggggggaaggggagcagacctgactacagtgatttataaccttagccaga
aattaagcaacatgaaaccaaaaagcccttcctactggaaatcaaatg
gaattccttcagttccctctcccccctccatggaacagcactaaacgact
cgccactattcacgagcttatgcatttctgtacgaacggtgagtatcttg
ctttggctgatacccaatttaattaatagcccttaaattgcacccttatt
cccaaaaagcattttgatcattgaaaggccttccaggggccttggcgatg
tcactagccatgtggaaactctggcgcgtaacattatgcactttgatgta
atagattttctttccattgtgttttcttaatcccctgagccccacagttc
cccctggtgtcattagagacgatgcaatccatcctacttaccaggaggaa
tggttcgtgtttctgcaaaaacttaaaaatgaataagaacctcttgtctc
aagttaccatagtccctttcccagaaaatagacaaatagacagacagaca
gataggtagatagaaacagatagaaataaataggcttcaccaaggaatgg
agccctttatcattgtagaaatccacacaagtcatatagcacagtggcat
tagctgtggaaggagaagcaaaagcccgagcaggagactttgccccaact
aagaaattatcagtctggagtctcatactccagcctcaagcacacaggtc
gcttttgacttctagaactgtgctcaaaggaaacttgaactatccttgtc
tctagcctgactcgatagattggacacaacacttatatgtgtctatctag
ctgtactgataaaatgcaatcactgaatgattctcagtagtagattggga
agtctccaagaaacttgcatctgcaccccatcctgaggagcacaaaggaa
accctgtcagaagcagatctccaccgcttaagtgggaagctgagtttcta
ctcaacatttgacagagatgtcgaagcctggaccatctctctgttatcca
tcagatggttatcctggggcttccccactagctgcatgtgctagggtgag
agaacgaagagatcatgggtggtgtttaataacaaccttctcttgtcatg
ttcttttagagcggatgtcattctctctgcatgtcctgcctccaatcctt
tgagagcttccctacgagaatcaagatgtccctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99969098_99969495
seq2: B6Ng01-091O09.b_49_446 (reverse)

seq1  CAATTGATTTCCAGTGGGAAGGGCTTTTTGGTTTCATGTTGCTTAATTTC  50
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTTGATTTCCAGTAGGAAGGGCTTTTTGGTTTCATGTTGCTTAATTTC  50

seq1  TGGCTAAGGTTATAAATCACTGTAGTCATGTCTGCTCCCCTTCCCCCCCA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGCTAAGGTTATAAATCACTGTAGTCAGGTCTGCTCCCCTTCCCCCCCA  100

seq1  CACACACAGTTCCCATCATGCCCACCACCCTGCTTGTTTTCAGTCTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGTTCCCATCATGCCCACCACCCTGCTTGTTTTCAGTCTATCC  150

seq1  CTAGAATTCTTAATCTAAGTCTGGAAATCCTTTCAGATATATGCATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTCTTAATCTAAGTCTGGAAATCCTTTCAGATATATGCATCATC  200

seq1  TCTTACAGGCTATATTTCTTACCACACATTCTGTGGAGTGAGACAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGCTATATTTCTTACCACACATTCTGTGGAGTGAGACAGTGTT  250

seq1  TAGGTTTCTGCCACCTTTGGGTTCGCTGCTCCGCTTTTGCACAAGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCTGCCACCTTTGGGTTCGCTGCTCCGCTTTTGCACAAGCATGG  300

seq1  CCATGAGTTTATGTTGGGAGCAGGCAGGAGTTAAATCTCTTTTTAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTTTATGTTGGGAGCAGGCAGGAGTTAAATCTCTTTTTAATGAG  350

seq1  AAAAATCAGTTTCTCTTTGGAGGTGCGGATGGAGCTGCCAAAGAATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGTTTCTCTTTGGAGGTGCGGATGGAGCTGCCAAAGAATTC  398

seq1: chr3_99826584_99827741
seq2: B6Ng01-091O09.g_70_1206

seq1  GAATTCCTTCAGTTCCCTCTCCCCCCTCCATGGAACAGCACTAAACGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGTTCCCTCTCCCCCCTCCATGGAACAGCACTAAACGACT  50

seq1  CGCCACTATTCACGAGCTTATGCATTTCTGTACGAACGGTGAGTATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTATTCACGAGCTTATGCATTTCTGTACGAACGGTGAGTATCTTG  100

seq1  CTTTGGCTGATACCCAATTTAATTAATAGCCCTTAAATTGCACCCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTGATACCCAATTTAATTAATAGCCCTTAAATTGCACCCTTATT  150

seq1  CCCAAAAAGCATTTTGATCATTGAAAGGCCTTCCAGGGGCCTTGGCGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAGCATTTTGATCATTGAAAGGCCTTCCAGGGGCCTTGGCGATG  200

seq1  TCACTAGCCATGTGGAAACTCTGGCGCGTAACATTATGCACTTTGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCCATGTGGAAACTCTGGCGCGTAACATTATGCACTTTGATGTA  250

seq1  ATAGATTTTCTTTCCATTGTGTTTTCTTAATCCCCTGAGCCCCACAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTCTTTCCATTGTGTTTTCTTAATCCCCTGAGCCCCACAGTTC  300

seq1  CCCCTGGTGTCATTAGAGACGATGCAATCCATCCTACTTACCAGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTGTCATTAGAGACGATGCAATCCATCCTACTTACCAGGAGGAA  350

seq1  TGGTTCGTGTTTCTGCAAAAACTTAAAAATGAATAAGAACCTCTTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGTGTTTCTGCAAAAACTTAAAAATGAATAAGAACCTCTTGTCTC  400

seq1  AAGTTACCATAGTCCCTTTCCCAGAAAATAGACAAATAGACAGACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCATAGTCCCTTTCCCAGAAAATAGACAAATAGACAGACAGACA  450

seq1  GATAGGTAGATAGAAACAGATAGAAATAAATAGGCTTCACCAAGGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAGATAGAAACAGATAGAAATAAATAGGCTTCACCAAGGAATGG  500

seq1  AGCCCTTTATCATTGTAGAAATCCACACAAGTCATATAGCACAGTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTATCATTGTAGAAATCCACACAAGTCATATAGCACAGTGGCAT  550

seq1  TAGCTGTGGAAGGAGAAGCAAAAGCCCGAGCAGGAGACTTTGCCCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGAAGGAGAAGCAAAAGCCCGAGCAGGAGACTTTGCCCCAACT  600

seq1  AAGAAATTATCAGTCTGGAGTCTCATACTCCAGCCTCAAGCACACAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTATCAGTCTGGAGTCTCATACTCCAGCCTCAAGCACACAGGTC  650

seq1  GCTTTTGACTTCTAGAACTGTGCTCAAAGGAAACTTGAACTATCCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGACTTCTAGAACTGTGCTCAAAGGAAACTTGAACTATCCTTGTC  700

seq1  TCTAGCCTGACTCGATAGATTGGACACAACACTTATATGTGTCTATCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGACTCGATAGATTGGACACAACACTTATATGTGTCTATCTAG  750

seq1  CTGTACTGATAAAATGCAATCACTGAATGATTCTCAGTAGTAGATTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGATAAAATGCAATCACTGAATGATTCTCAGTAGTAGATTGGGA  800

seq1  AGTCTCCAAGAAACTTGCATCTGCACCCCATCCTGAGGAGCACAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCAAGAAACTTGCATCTGCACCCCATCCTGAGGAGCACAAAGGAA  850

seq1  ACCCTGTCAGAAGCAGATCTCCACCGCTTAAGTGGGAAGCTGAGTTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCAGAAGCAGATCTCCACCGCTTAAGTGGGAAGCTGAGTTTCTA  900

seq1  CTCAACATTTGACAGAAGATGTCGAAGCCTGGACCATCTCTCTGTTTATC  950
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CTCAACATTTGACAG-AGATGTCGAAGCCTGGACCATCTCTCTG-TTATC  948

seq1  CAATCAGATGGTTATCCTGGGGCTTCCCCACTAGCTGCAATGTGGCTAGG  1000
      | |||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  C-ATCAGATGGTTATCCTGGGGCTTCCCCACTAGCTGC-ATGT-GCTAGG  995

seq1  GTGAGAGAACAGAAGAGATCATGGGTGGTGGTTTTAAATACAAACCTCTC  1050
      |||||||||| |||||||||||||||||||  |||||  |||| | ||||
seq2  GTGAGAGAAC-GAAGAGATCATGGGTGGTG--TTTAATAACAACCTTCTC  1042

seq1  TTGTCAGTGTTCTTTTTAGAAGCGAAGTGTTCAATTCTCTCTGCATGTCT  1100
      |||||| ||||| |||||| |||| | |||   |||||||||||||||| 
seq2  TTGTCA-TGTTC-TTTTAG-AGCGGA-TGT--CATTCTCTCTGCATGTC-  1085

seq1  CTGCCTCCCAAATCCTTTTGAGAGCTTCCCTAACCGAGAATCAAGAATGT  1150
      ||||||||  ||||| ||||||||||||||||  ||||||||||| ||||
seq2  CTGCCTCC--AATCC-TTTGAGAGCTTCCCTA--CGAGAATCAAG-ATGT  1129

seq1  CCCTCATC  1158
      ||||||||
seq2  CCCTCATC  1137